Clone MXO01308 Report

Search the DGRC for MXO01308

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:8
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptnerfin-1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01308.3prime Sequence

826 bp (823 high quality bases) assembled on 2007-03-15

> MXO01308.3prime
ATGGTCTAGAAAGCTTGCGTGGGCCATGGTTGTGTGTTGGATGACGGAGG
CGCAGTTCCTCAAGTTGGTCAGAGCTGCGGCAGCAATGCTTTCCTCCTCC
GTGAGACCATGTTCCACAATCTGAAGCCGTCCGTATCCCGCAGATGAGGC
GGAGGAGCTGGAGTCCGAGAGGTAGTCGTTGTCATAGTCGTAGTTCTCCC
TGGCATTCGATCCCACCACGTAGACTCCCTCATCGGAGTGCGAACTGCTG
GCGGAGGAGGAGGTGGACACCGCCTGGTTAAAGTGAAAACTGCCTGTGAT
AGTTGTGGTGGTGGGCTTCATTTCCAACTGTTTTTCCGCTGGCTTTTCCT
TTTTCTGATGGGTCAGCTGGTGCTTCCTCATTTATGCCCCTCCCTTAAAC
TTCTTGCCGCACTCCTGGCAATCGAAGGCCAGTTCCTCCTCCGACTTTTT
CTCCACCTGCTGCTGTTTCTCCGGCTGGTTGGTGGTATTGCGATTCTCCT
TTTTAGACGCCTCCTTCCTCGGCTTGTGCCACCGGCGATGGGAGGCCAAG
TTAGCAGGACAATTGAACTGCTTGCCGCACTCGGGACACCGGTACTCCAG
CAGGACGATGCAGGCGCACCTGTGCCGGGCCAGGCCGAAGGCGTCCTCGA
ACTTGATCTTGCACAGTCGGCAGACATAGTCCCCGATCACGTTCTTGATG
GCGGCCAGTTCCGCCTTGGTCTCCTCCGTGATCTCGACTATGTTGTACTT
GGGGTCAATGTCGCCGTTGCTGTACTGCATCGATCCATCGGTGATGTCCT
CGAGCGGTCGGATGACGGTGCCCGAG

MXO01308.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:03:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG13906-PA 1410 nerfin-1-RA 600..1032 826..394 2165 100 Minus
CG13906-PA 1410 nerfin-1-RA 1046..1407 380..19 1810 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
nerfin-1-RA 3208 CG13906-RA 786..1593 826..19 3950 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 909897..910704 826..19 3950 99.3 Minus
Blast to na_te.dros performed on 2014-11-28 20:31:00 has no hits.

MXO01308.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:09 Download gff for MXO01308.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13906-PA 600..1410 16..826 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:58 Download gff for MXO01308.3prime
Subject Subject Range Query Range Percent Splice Strand
nerfin-1-RA 786..1597 15..826 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:07 Download gff for MXO01308.3prime
Subject Subject Range Query Range Percent Splice Strand
nerfin-1-RA 786..1597 15..826 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:07 Download gff for MXO01308.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 909897..910708 15..826 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:58 Download gff for MXO01308.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 909897..910708 15..826 99   Minus

MXO01308.5prime Sequence

734 bp (693 high quality bases) assembled on 2007-03-15

> MXO01308.5prime
CAGTCGACATGGCCCAGATACAGACACCGATACCGATTCCAGCCCCCGCG
GAGCCCATTGAAAAGCTCAGCCACCCGCACAGCATTGGCATCCAGTTGCA
GCACAAGGGGATGCCCCATGGCCTGGGCCTGCTGACCACAGTGGCCTCGC
TGCCCCCCAAGTACCGCAGTCGATATCTGAACCTGAAAACCAGGTGCGAA
ATACCGCTGGATCTAACGCTGAAGCTTCCCTCACCACTGCCCAGCAGCGA
TGTGCCCATGGCGGCCACATTCGCGGAGGTCTATAGCGAAAATACGAGTG
CTAGTTCCAGCGAGGTGCAGGGGGAGGTGACCAAGGTGGAGGAGCTGCCG
GTGAAGCCCCCAACACCACCGCAGAGTCCAGCAGGTTTTCCCCCCCCCAC
CCGGGAGAGCTATGACGACAAGCAAAATAAAATGGCCAAAAAGGAGGAGG
AGGTTCCGGTGGAAACAGTAGAATCCACACCAGCGAAACCCGTCAAAGTG
GCAGAATCTGCGCCTAAAACCAACAAGGCCTCCACTTCCTCGGGAAAGCC
CTCCCGCAATAAAGCCACCCGCAAGCTGAAGTTCGATGAGGAGACCAGTT
CCCCCGTCTCGGGCACCGTCATCCGACCGCTCGAGGACATCACCGATGGA
TCGATGCAGTACAGCAACGGCGACATTGACCCCAAGTACAACATAGTCGA
GATCACGGAGGAGACCAAGGCGGAACTGGCCGCC

MXO01308.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:03:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG13906-PA 1410 nerfin-1-RA 1..377 9..385 1885 100 Plus
CG13906-PA 1410 nerfin-1-RA 420..726 428..734 1535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
nerfin-1-RA 3208 CG13906-RA 186..912 8..734 3365 97.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 909297..910023 8..734 3365 97.5 Plus
Blast to na_te.dros performed on 2014-11-28 23:33:21 has no hits.

MXO01308.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:09 Download gff for MXO01308.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13906-PA 1..726 9..734 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:28:29 Download gff for MXO01308.5prime
Subject Subject Range Query Range Percent Splice Strand
nerfin-1-RA 177..912 1..734 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:16:44 Download gff for MXO01308.5prime
Subject Subject Range Query Range Percent Splice Strand
nerfin-1-RA 177..912 1..734 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:16:44 Download gff for MXO01308.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 909288..910023 1..734 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:28:29 Download gff for MXO01308.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 909288..910023 1..734 97   Plus