MXO01308.3prime Sequence
826 bp (823 high quality bases) assembled on 2007-03-15
> MXO01308.3prime
ATGGTCTAGAAAGCTTGCGTGGGCCATGGTTGTGTGTTGGATGACGGAGG
CGCAGTTCCTCAAGTTGGTCAGAGCTGCGGCAGCAATGCTTTCCTCCTCC
GTGAGACCATGTTCCACAATCTGAAGCCGTCCGTATCCCGCAGATGAGGC
GGAGGAGCTGGAGTCCGAGAGGTAGTCGTTGTCATAGTCGTAGTTCTCCC
TGGCATTCGATCCCACCACGTAGACTCCCTCATCGGAGTGCGAACTGCTG
GCGGAGGAGGAGGTGGACACCGCCTGGTTAAAGTGAAAACTGCCTGTGAT
AGTTGTGGTGGTGGGCTTCATTTCCAACTGTTTTTCCGCTGGCTTTTCCT
TTTTCTGATGGGTCAGCTGGTGCTTCCTCATTTATGCCCCTCCCTTAAAC
TTCTTGCCGCACTCCTGGCAATCGAAGGCCAGTTCCTCCTCCGACTTTTT
CTCCACCTGCTGCTGTTTCTCCGGCTGGTTGGTGGTATTGCGATTCTCCT
TTTTAGACGCCTCCTTCCTCGGCTTGTGCCACCGGCGATGGGAGGCCAAG
TTAGCAGGACAATTGAACTGCTTGCCGCACTCGGGACACCGGTACTCCAG
CAGGACGATGCAGGCGCACCTGTGCCGGGCCAGGCCGAAGGCGTCCTCGA
ACTTGATCTTGCACAGTCGGCAGACATAGTCCCCGATCACGTTCTTGATG
GCGGCCAGTTCCGCCTTGGTCTCCTCCGTGATCTCGACTATGTTGTACTT
GGGGTCAATGTCGCCGTTGCTGTACTGCATCGATCCATCGGTGATGTCCT
CGAGCGGTCGGATGACGGTGCCCGAG
MXO01308.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:03:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13906-PA | 1410 | nerfin-1-RA | 600..1032 | 826..394 | 2165 | 100 | Minus |
CG13906-PA | 1410 | nerfin-1-RA | 1046..1407 | 380..19 | 1810 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nerfin-1-RA | 3208 | CG13906-RA | 786..1593 | 826..19 | 3950 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 909897..910704 | 826..19 | 3950 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:31:00 has no hits.
MXO01308.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:09 Download gff for
MXO01308.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13906-PA | 600..1410 | 16..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:58 Download gff for
MXO01308.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nerfin-1-RA | 786..1597 | 15..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:07 Download gff for
MXO01308.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nerfin-1-RA | 786..1597 | 15..826 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:07 Download gff for
MXO01308.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 909897..910708 | 15..826 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:58 Download gff for
MXO01308.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 909897..910708 | 15..826 | 99 | | Minus |
MXO01308.5prime Sequence
734 bp (693 high quality bases) assembled on 2007-03-15
> MXO01308.5prime
CAGTCGACATGGCCCAGATACAGACACCGATACCGATTCCAGCCCCCGCG
GAGCCCATTGAAAAGCTCAGCCACCCGCACAGCATTGGCATCCAGTTGCA
GCACAAGGGGATGCCCCATGGCCTGGGCCTGCTGACCACAGTGGCCTCGC
TGCCCCCCAAGTACCGCAGTCGATATCTGAACCTGAAAACCAGGTGCGAA
ATACCGCTGGATCTAACGCTGAAGCTTCCCTCACCACTGCCCAGCAGCGA
TGTGCCCATGGCGGCCACATTCGCGGAGGTCTATAGCGAAAATACGAGTG
CTAGTTCCAGCGAGGTGCAGGGGGAGGTGACCAAGGTGGAGGAGCTGCCG
GTGAAGCCCCCAACACCACCGCAGAGTCCAGCAGGTTTTCCCCCCCCCAC
CCGGGAGAGCTATGACGACAAGCAAAATAAAATGGCCAAAAAGGAGGAGG
AGGTTCCGGTGGAAACAGTAGAATCCACACCAGCGAAACCCGTCAAAGTG
GCAGAATCTGCGCCTAAAACCAACAAGGCCTCCACTTCCTCGGGAAAGCC
CTCCCGCAATAAAGCCACCCGCAAGCTGAAGTTCGATGAGGAGACCAGTT
CCCCCGTCTCGGGCACCGTCATCCGACCGCTCGAGGACATCACCGATGGA
TCGATGCAGTACAGCAACGGCGACATTGACCCCAAGTACAACATAGTCGA
GATCACGGAGGAGACCAAGGCGGAACTGGCCGCC
MXO01308.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:03:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13906-PA | 1410 | nerfin-1-RA | 1..377 | 9..385 | 1885 | 100 | Plus |
CG13906-PA | 1410 | nerfin-1-RA | 420..726 | 428..734 | 1535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nerfin-1-RA | 3208 | CG13906-RA | 186..912 | 8..734 | 3365 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 909297..910023 | 8..734 | 3365 | 97.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:33:21 has no hits.
MXO01308.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:09 Download gff for
MXO01308.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13906-PA | 1..726 | 9..734 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:28:29 Download gff for
MXO01308.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nerfin-1-RA | 177..912 | 1..734 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:16:44 Download gff for
MXO01308.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nerfin-1-RA | 177..912 | 1..734 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:16:44 Download gff for
MXO01308.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 909288..910023 | 1..734 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:28:29 Download gff for
MXO01308.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 909288..910023 | 1..734 | 97 | | Plus |