MXO01309.3prime Sequence
783 bp (677 high quality bases) assembled on 2007-03-15
> MXO01309.3prime
ATGGTCTAGAAAGCTTGCACTTCCTCCCCCCAAAATGGCCGATATGCTGA
AGCCCTTGCTCCTTGTAGATGGTTGTTCCAGTGGCTGTTCCTGCGTAGAC
TGCTCCAACGTGCTCGTTTCACTGCCCACATCCAGTTCGAGTTCTTCGGC
TCCCGACTCATCGGAAATGAGATCCGCGCCAGAAACGCCTGGTGGAAGGT
TCAGGCCAGGATGTGGGCCCAAACCCGCCTGTAGCATCGCTGCTGGTGGA
TACATAGGTGAGGCCTGAATCGCTCCTCCATACTCATGGGGTCTCCCAAA
GTAGGTACATGCCAAATCCACAAGCGATGGCCTCAGCAGGCTCTGCATAT
TCTGCTGAAAGTGCTGCATAAAAACGCTGGATGCACTCCTCGCCTGGAGG
GGATGCGGATGCGAATGCAAATGTAGATGGGGCGGTGGAGAGCCCAGGGC
CAAAGAACTGGCGCCAGGCACCGACTGATCGTCCAGCGATGATGATAAGG
AGCAGGCTGAGCCATTTGATCTCAGGCGCTTGATTTGCGGACCATCCGAA
TCGCCGATCGACGATGTTCCTCCGGCTGTCTCACCGCCTCCTTTCGTTGG
CGACATGTCAGACTCGGATTGGGACTGAGAATGGGATAGTGACGGCGACT
GATCTTGATCCTCGCCCGTTGGCGATGAAGACATCTTGCGTTTGCAGCGC
GATTGTCCCGTTTCGCGGAAGCCCTTGGCAAACGGATTGTTGTCGATCTT
CAGCTTGGTGATGCGATCGTTCTGGTAGGCTGT
MXO01309.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:03:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5187-PB | 1410 | Doc2-RB | 643..1407 | 783..19 | 3750 | 99.6 | Minus |
CG5187-PA | 1410 | Doc2-RA | 643..1407 | 783..19 | 3750 | 99.6 | Minus |
CG5133-PA | 1176 | Doc1-RA | 652..744 | 783..691 | 190 | 88.1 | Minus |
CG5093-PA | 1275 | Doc3-RA | 670..719 | 765..716 | 175 | 94 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc2-RA | 1945 | CG5187-RA | 998..1762 | 783..19 | 3780 | 99.6 | Minus |
Doc1-RB | 1339 | CG5133-RB | 630..722 | 783..691 | 300 | 88.2 | Minus |
Doc1-RA | 1526 | CG5133-RA | 817..909 | 783..691 | 300 | 88.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9012869..9013624 | 19..774 | 3735 | 99.6 | Plus |
3L | 28110227 | 3L | 9044342..9044425 | 774..691 | 270 | 88.1 | Minus |
3L | 28110227 | 3L | 9006361..9006452 | 774..683 | 265 | 85.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:02:13 has no hits.
MXO01309.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:09 Download gff for
MXO01309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5187-PA | 643..1410 | 18..783 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:28 Download gff for
MXO01309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc2-RA | 998..1762 | 19..783 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:02 Download gff for
MXO01309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc2-RA | 998..1762 | 19..783 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:02 Download gff for
MXO01309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9012869..9013624 | 19..774 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:28 Download gff for
MXO01309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9005969..9006724 | 19..774 | 99 | | Plus |
MXO01309.5prime Sequence
885 bp (705 high quality bases) assembled on 2007-03-15
> MXO01309.5prime
CAGTCGACATGATCACCATGAACGAGCTGGTGGATCTGCGCATGCAGCAG
CACATAGCACACGAGATCTATCGCCAGCAGATCATGCAGCGCATACCAGA
TCCGTTTCCGCCGATGCTGCCAATTCCGATGCCACGGCACGTGATCATGC
CACCTCGAGTCACGTTGCCCGGCGTGGAGATGACCCTGCAGAACGACGAT
CTATGGAAGCAGTTCCATCAAATTGGCACGGAAATGATCATCACCAAGAG
TGGCAGACGCATGTTCCCCTCGATGCGACTAAGTGTTTCCGGCTTGGAGG
ACGAGAGCAACTATTGCGTGCTCCTCGAGATGGTACCCATTGGCGACTGC
CGCTACAAGTTCTCCGGCTCCCAGTGGGTTCCAGCCGGAGGACCCGACCC
GCAAAGTCCCCAGCGGATGTACCTGCATCCGGACAGTCCGGCCACCGGTG
CCCATTGGCAGGCGCAGCCCATACTGTTCAATAAGGTCAAGTTGACCAAT
AACACGCTGGATAACAGCGGCCATATTGTCCTGGCCAGCATGCACAAGTA
TCAGCCGCGTCTGCACGTCATACGCACCGCTGATCTGGCGCAGATTCCCT
GGGCCCCACAACAGGCCTTTGTGTTCGCCGAGACGGAGTTCGTGGCCGTG
ACAGCCTACCAGAACGATCGCATCACCAAGCTGAAGATCGACAACAATCC
GTTTGCCAAGGGCTTCCGCGAAACGGGACAATCGCGCTGCAAACGCAAGA
TGTCTTCATCGCCAACGGGCGAGGATCAAGATCAGTCGCCGTCACTATCC
CATTCTCAGTCCCAATCCGAGTCTGACATGTCGCCAACGAAAGGAGGCGG
TGAGACAGCCGGAGGAACATCGTCGATCGGCGATT
MXO01309.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5187-PB | 1410 | Doc2-RB | 1..877 | 9..885 | 4335 | 99.7 | Plus |
CG5187-PA | 1410 | Doc2-RA | 1..877 | 9..885 | 4335 | 99.7 | Plus |
CG5133-PA | 1176 | Doc1-RA | 312..461 | 311..460 | 425 | 91.3 | Plus |
CG5093-PA | 1275 | Doc3-RA | 493..587 | 492..586 | 250 | 90.5 | Plus |
CG5133-PA | 1176 | Doc1-RA | 631..744 | 630..743 | 220 | 87.7 | Plus |
CG5093-PA | 1275 | Doc3-RA | 312..393 | 311..392 | 210 | 90.2 | Plus |
CG5093-PA | 1275 | Doc3-RA | 670..719 | 669..718 | 175 | 94 | Plus |
CG5133-PA | 1176 | Doc1-RA | 211..279 | 210..278 | 170 | 89.8 | Plus |
CG5133-PA | 1176 | Doc1-RA | 52..101 | 60..109 | 150 | 92 | Plus |
CG5093-PA | 1275 | Doc3-RA | 235..278 | 234..277 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc2-RA | 1945 | CG5187-RA | 355..1232 | 8..885 | 4360 | 99.8 | Plus |
Doc1-RA | 1526 | CG5133-RA | 173..909 | 16..743 | 1405 | 80 | Plus |
Doc1-RB | 1339 | CG5133-RB | 145..722 | 166..743 | 1300 | 81.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9014708..9014977 | 524..255 | 1320 | 99.3 | Minus |
3L | 28110227 | 3L | 9013399..9013624 | 885..660 | 1130 | 100 | Minus |
3L | 28110227 | 3L | 9017929..9018088 | 256..97 | 800 | 100 | Minus |
3L | 28110227 | 3L | 9014492..9014629 | 662..525 | 690 | 100 | Minus |
3L | 28110227 | 3L | 9043385..9043655 | 254..524 | 680 | 83.4 | Plus |
3L | 28110227 | 3L | 9005813..9006034 | 295..516 | 465 | 80.6 | Plus |
3L | 28110227 | 3L | 9018801..9018892 | 99..8 | 460 | 100 | Minus |
3L | 28110227 | 3L | 9006155..9006296 | 521..662 | 410 | 85.9 | Plus |
3L | 28110227 | 3L | 9044342..9044425 | 660..743 | 270 | 88.1 | Plus |
3L | 28110227 | 3L | 9006361..9006452 | 660..751 | 265 | 85.9 | Plus |
3L | 28110227 | 3L | 9041547..9041639 | 16..108 | 240 | 83.9 | Plus |
3L | 28110227 | 3L | 9043731..9043861 | 532..662 | 220 | 77.9 | Plus |
2L | 23513712 | 2L | 5466038..5466111 | 648..721 | 190 | 83.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:52:56 has no hits.
MXO01309.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:10 Download gff for
MXO01309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5187-PB | 1..877 | 9..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:21 Download gff for
MXO01309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc2-RA | 350..1232 | 1..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:44 Download gff for
MXO01309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc2-RA | 350..1232 | 1..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:44 Download gff for
MXO01309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9018801..9018895 | 1..99 | 95 | | Minus |
3L | 9013399..9013621 | 663..885 | 100 | <- | Minus |
3L | 9014492..9014629 | 525..662 | 100 | <- | Minus |
3L | 9014708..9014975 | 257..524 | 99 | <- | Minus |
3L | 9017929..9018085 | 100..256 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:21 Download gff for
MXO01309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9011901..9011995 | 1..99 | 95 | | Minus |
arm_3L | 9006499..9006721 | 663..885 | 100 | <- | Minus |
arm_3L | 9007592..9007729 | 525..662 | 100 | <- | Minus |
arm_3L | 9007808..9008075 | 257..524 | 99 | <- | Minus |
arm_3L | 9011029..9011185 | 100..256 | 100 | <- | Minus |