Clone MXO01309 Report

Search the DGRC for MXO01309

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:9
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptDoc2-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01309.3prime Sequence

783 bp (677 high quality bases) assembled on 2007-03-15

> MXO01309.3prime
ATGGTCTAGAAAGCTTGCACTTCCTCCCCCCAAAATGGCCGATATGCTGA
AGCCCTTGCTCCTTGTAGATGGTTGTTCCAGTGGCTGTTCCTGCGTAGAC
TGCTCCAACGTGCTCGTTTCACTGCCCACATCCAGTTCGAGTTCTTCGGC
TCCCGACTCATCGGAAATGAGATCCGCGCCAGAAACGCCTGGTGGAAGGT
TCAGGCCAGGATGTGGGCCCAAACCCGCCTGTAGCATCGCTGCTGGTGGA
TACATAGGTGAGGCCTGAATCGCTCCTCCATACTCATGGGGTCTCCCAAA
GTAGGTACATGCCAAATCCACAAGCGATGGCCTCAGCAGGCTCTGCATAT
TCTGCTGAAAGTGCTGCATAAAAACGCTGGATGCACTCCTCGCCTGGAGG
GGATGCGGATGCGAATGCAAATGTAGATGGGGCGGTGGAGAGCCCAGGGC
CAAAGAACTGGCGCCAGGCACCGACTGATCGTCCAGCGATGATGATAAGG
AGCAGGCTGAGCCATTTGATCTCAGGCGCTTGATTTGCGGACCATCCGAA
TCGCCGATCGACGATGTTCCTCCGGCTGTCTCACCGCCTCCTTTCGTTGG
CGACATGTCAGACTCGGATTGGGACTGAGAATGGGATAGTGACGGCGACT
GATCTTGATCCTCGCCCGTTGGCGATGAAGACATCTTGCGTTTGCAGCGC
GATTGTCCCGTTTCGCGGAAGCCCTTGGCAAACGGATTGTTGTCGATCTT
CAGCTTGGTGATGCGATCGTTCTGGTAGGCTGT

MXO01309.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:03:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5187-PB 1410 Doc2-RB 643..1407 783..19 3750 99.6 Minus
CG5187-PA 1410 Doc2-RA 643..1407 783..19 3750 99.6 Minus
CG5133-PA 1176 Doc1-RA 652..744 783..691 190 88.1 Minus
CG5093-PA 1275 Doc3-RA 670..719 765..716 175 94 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
Doc2-RA 1945 CG5187-RA 998..1762 783..19 3780 99.6 Minus
Doc1-RB 1339 CG5133-RB 630..722 783..691 300 88.2 Minus
Doc1-RA 1526 CG5133-RA 817..909 783..691 300 88.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9012869..9013624 19..774 3735 99.6 Plus
3L 28110227 3L 9044342..9044425 774..691 270 88.1 Minus
3L 28110227 3L 9006361..9006452 774..683 265 85.9 Minus
Blast to na_te.dros performed on 2014-11-28 22:02:13 has no hits.

MXO01309.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:09 Download gff for MXO01309.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5187-PA 643..1410 18..783 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:28 Download gff for MXO01309.3prime
Subject Subject Range Query Range Percent Splice Strand
Doc2-RA 998..1762 19..783 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:02 Download gff for MXO01309.3prime
Subject Subject Range Query Range Percent Splice Strand
Doc2-RA 998..1762 19..783 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:02 Download gff for MXO01309.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9012869..9013624 19..774 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:28 Download gff for MXO01309.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9005969..9006724 19..774 99   Plus

MXO01309.5prime Sequence

885 bp (705 high quality bases) assembled on 2007-03-15

> MXO01309.5prime
CAGTCGACATGATCACCATGAACGAGCTGGTGGATCTGCGCATGCAGCAG
CACATAGCACACGAGATCTATCGCCAGCAGATCATGCAGCGCATACCAGA
TCCGTTTCCGCCGATGCTGCCAATTCCGATGCCACGGCACGTGATCATGC
CACCTCGAGTCACGTTGCCCGGCGTGGAGATGACCCTGCAGAACGACGAT
CTATGGAAGCAGTTCCATCAAATTGGCACGGAAATGATCATCACCAAGAG
TGGCAGACGCATGTTCCCCTCGATGCGACTAAGTGTTTCCGGCTTGGAGG
ACGAGAGCAACTATTGCGTGCTCCTCGAGATGGTACCCATTGGCGACTGC
CGCTACAAGTTCTCCGGCTCCCAGTGGGTTCCAGCCGGAGGACCCGACCC
GCAAAGTCCCCAGCGGATGTACCTGCATCCGGACAGTCCGGCCACCGGTG
CCCATTGGCAGGCGCAGCCCATACTGTTCAATAAGGTCAAGTTGACCAAT
AACACGCTGGATAACAGCGGCCATATTGTCCTGGCCAGCATGCACAAGTA
TCAGCCGCGTCTGCACGTCATACGCACCGCTGATCTGGCGCAGATTCCCT
GGGCCCCACAACAGGCCTTTGTGTTCGCCGAGACGGAGTTCGTGGCCGTG
ACAGCCTACCAGAACGATCGCATCACCAAGCTGAAGATCGACAACAATCC
GTTTGCCAAGGGCTTCCGCGAAACGGGACAATCGCGCTGCAAACGCAAGA
TGTCTTCATCGCCAACGGGCGAGGATCAAGATCAGTCGCCGTCACTATCC
CATTCTCAGTCCCAATCCGAGTCTGACATGTCGCCAACGAAAGGAGGCGG
TGAGACAGCCGGAGGAACATCGTCGATCGGCGATT

MXO01309.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5187-PB 1410 Doc2-RB 1..877 9..885 4335 99.7 Plus
CG5187-PA 1410 Doc2-RA 1..877 9..885 4335 99.7 Plus
CG5133-PA 1176 Doc1-RA 312..461 311..460 425 91.3 Plus
CG5093-PA 1275 Doc3-RA 493..587 492..586 250 90.5 Plus
CG5133-PA 1176 Doc1-RA 631..744 630..743 220 87.7 Plus
CG5093-PA 1275 Doc3-RA 312..393 311..392 210 90.2 Plus
CG5093-PA 1275 Doc3-RA 670..719 669..718 175 94 Plus
CG5133-PA 1176 Doc1-RA 211..279 210..278 170 89.8 Plus
CG5133-PA 1176 Doc1-RA 52..101 60..109 150 92 Plus
CG5093-PA 1275 Doc3-RA 235..278 234..277 145 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:57
Subject Length Description Subject Range Query Range Score Percent Strand
Doc2-RA 1945 CG5187-RA 355..1232 8..885 4360 99.8 Plus
Doc1-RA 1526 CG5133-RA 173..909 16..743 1405 80 Plus
Doc1-RB 1339 CG5133-RB 145..722 166..743 1300 81.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9014708..9014977 524..255 1320 99.3 Minus
3L 28110227 3L 9013399..9013624 885..660 1130 100 Minus
3L 28110227 3L 9017929..9018088 256..97 800 100 Minus
3L 28110227 3L 9014492..9014629 662..525 690 100 Minus
3L 28110227 3L 9043385..9043655 254..524 680 83.4 Plus
3L 28110227 3L 9005813..9006034 295..516 465 80.6 Plus
3L 28110227 3L 9018801..9018892 99..8 460 100 Minus
3L 28110227 3L 9006155..9006296 521..662 410 85.9 Plus
3L 28110227 3L 9044342..9044425 660..743 270 88.1 Plus
3L 28110227 3L 9006361..9006452 660..751 265 85.9 Plus
3L 28110227 3L 9041547..9041639 16..108 240 83.9 Plus
3L 28110227 3L 9043731..9043861 532..662 220 77.9 Plus
2L 23513712 2L 5466038..5466111 648..721 190 83.8 Plus
Blast to na_te.dros performed on 2014-11-28 19:52:56 has no hits.

MXO01309.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:10 Download gff for MXO01309.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5187-PB 1..877 9..885 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:21 Download gff for MXO01309.5prime
Subject Subject Range Query Range Percent Splice Strand
Doc2-RA 350..1232 1..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:44 Download gff for MXO01309.5prime
Subject Subject Range Query Range Percent Splice Strand
Doc2-RA 350..1232 1..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:44 Download gff for MXO01309.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9018801..9018895 1..99 95   Minus
3L 9013399..9013621 663..885 100 <- Minus
3L 9014492..9014629 525..662 100 <- Minus
3L 9014708..9014975 257..524 99 <- Minus
3L 9017929..9018085 100..256 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:21 Download gff for MXO01309.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9011901..9011995 1..99 95   Minus
arm_3L 9006499..9006721 663..885 100 <- Minus
arm_3L 9007592..9007729 525..662 100 <- Minus
arm_3L 9007808..9008075 257..524 99 <- Minus
arm_3L 9011029..9011185 100..256 100 <- Minus