MXO01310.3prime Sequence
837 bp (745 high quality bases) assembled on 2007-03-15
> MXO01310.3prime
ATGGTCTAGAAAGCTTGCGTCCAAGTTAAGTGGCGGTGTGCTGTTCGGTC
CTCCCAATATAAACGACGTAGGACTGTGCACGGAGATGCTGTCGAGGTCC
AGAGCGCCTTCGCCCTTCTCCAGCAGGCCGCTGCCATCCTGCTTCATCAT
CATGCGGCGCCATTTGGCCCTTGCATTTTGAAACCAGACCTGTAGGACCC
TCTTTGGTAAACCAGTTTTCTGTGACAATTGTTTTAGATCCTTTGCATCA
GGGTTATGATTAATGGCAAAGTAGGACTTCATGGTACGCAGCTGGTGATG
CTTAAACGAGGTTCGCATTCGTTTGGTGCGCGACGAGGAGCTTAGGTGCG
AGCCTCGGCCAAAGTCCACGTACTCAGTGTTGATATCTATGTTAGCGGTG
AACGCCTCGATGTCCTTGGGCTTGCGCTTGCGGGGCCTGCCCTTTTGACG
AGCTGGCTGCGGCAGTCCGTTGATTACGTGGGACGCGGGCACAAAGATGC
CCGTAGGAACAATGCTCCGACTAGGGTCCGAGTGCGGGCTCGAGGAGTCG
TTGTGGGGTGAGCCGAACTGGGCGCTGTACGGGTAGGTGGCGCTCATACT
GGATGAGGCGGTATCCCCCTCCCTGGCTATGCTGTAGTGGGTCCTGCAGT
AGATGAGGGCGTCGATGATGCCGTACTGGTCTCCCTTTGTCAGTGGCGTG
TGGCAGACAGTGCAGCAGAAGCAGTTGACGTGAAAAACAAGATTTCTGGC
GCGCATGACCAGCTCGTTGGAGCTGATGGAGGCCAGGCAGCGCGAGCATC
GGCGAGTACCAAAAAACTATAATAATCGTTTTTGCAT
MXO01310.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8376-PA | 1410 | ap-RA | 610..1407 | 816..19 | 3965 | 99.8 | Minus |
| CG8376-PB | 741 | ap-RB | 1..738 | 756..19 | 3665 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ap-RE | 2149 | CG8376-RE | 619..1437 | 836..19 | 4055 | 99.8 | Minus |
| ap-RC | 3089 | CG8376-RC | 1559..2377 | 836..19 | 4055 | 99.8 | Minus |
| ap-RA | 4114 | CG8376-RA | 1562..2380 | 836..19 | 4055 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5708611..5708869 | 387..645 | 1295 | 100 | Plus |
| 2R | 25286936 | 2R | 5708181..5708381 | 188..388 | 990 | 99.5 | Plus |
| 2R | 25286936 | 2R | 5708925..5709098 | 643..816 | 870 | 100 | Plus |
| 2R | 25286936 | 2R | 5707936..5708108 | 19..191 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:43:37 has no hits.
MXO01310.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:10 Download gff for
MXO01310.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8376-PA | 587..1410 | 15..837 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:07 Download gff for
MXO01310.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ap-RA | 1560..2383 | 15..837 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:16 Download gff for
MXO01310.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ap-RA | 1560..2383 | 15..837 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:16 Download gff for
MXO01310.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5707933..5708106 | 15..189 | 98 | <- | Plus |
| 2R | 5708183..5708379 | 190..386 | 99 | <- | Plus |
| 2R | 5708611..5708867 | 387..643 | 100 | <- | Plus |
| 2R | 5708926..5709099 | 644..816 | 99 | <- | Plus |
| 2R | 5716649..5716668 | 817..837 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:07 Download gff for
MXO01310.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1595438..1595611 | 15..189 | 98 | <- | Plus |
| arm_2R | 1595688..1595884 | 190..386 | 99 | <- | Plus |
| arm_2R | 1596116..1596372 | 387..643 | 100 | <- | Plus |
| arm_2R | 1596431..1596604 | 644..816 | 99 | <- | Plus |
| arm_2R | 1604154..1604173 | 817..837 | 95 | | Plus |
MXO01310.5prime Sequence
869 bp (729 high quality bases) assembled on 2007-03-15
> MXO01310.5prime
CAGTCGACATGGGCGTCTGCACCGAGGAGCGCCCTGTGATGCATTGGCAG
CAGAGCGCAAGATTTCTTGGGCCCGGCGCAAGGGAGAAAAGTCCAACACC
ACCTGTAGCACATCAAGGGAGCAATCAATGTGGCAGTGCTGCAGGTGCAA
ATAACAATCACCCATTGTTCCGCGCGTGCTCCTCATCCTCGTGTCCAGAT
ATTTGTGATCATAGTACAAAGCCATTTGGCAACGCTTACGGCACCGAGTC
ATTTAGAAGCTACGAAACAGCCGATCGTGCTACCTTTGAGGACTCAGCCG
CCAAATTCTCCATCAGCCGCAGTCGAACAGACTGCACGGAGGTCAGCGAC
GAGACGACGTCGGGCATATCATTCAAGACCGAACCCTTCGGACCCCCCAC
CAGTCCCGAGTCCACAAGCGATAGCAAAATAACGCGCAACCTCGACGACT
GCTCCGGCTGCGGACGTCAGATACAGGATCGCTTCTACCTCTCCGCTGTG
GAAAAACGGTGGCATGCAAGTTGCCTACAGTGCTACGCCTGTCGGCAGCC
GCTGGAACGGGAATCCTCATGCTACTCACGTGACGGCAACATTTATTGCA
AAAACGATTATTATAGTTTTTTTGGTACTCGCCGATGCTCGCGCTGCCTG
GCCTCCATCAGCTCCAACGAGCTGGTCATGCGCGCCAGAAATCTTGTTTT
TCACGTCAACTGCTTCTGCTGCACTGTCTGCCACACGCCACTGACAAAGG
GAGACCAGTACGGCATCATCGACGCCCTCATCTACTGCAGGACCCACTAC
AGCATAGCCAGGGAGGGGGATACCGCCTCATCCAGTATGAGCGCCACCTA
CCCGTACAGCGCCCAGTTC
MXO01310.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8376-PA | 1410 | ap-RA | 1..861 | 9..869 | 4255 | 99.7 | Plus |
| CG8376-PB | 741 | ap-RB | 1..192 | 678..869 | 960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ap-RA | 4114 | CG8376-RA | 972..1834 | 7..869 | 4285 | 99.8 | Plus |
| ap-RC | 3089 | CG8376-RC | 972..1831 | 7..869 | 4230 | 99.4 | Plus |
| ap-RE | 2149 | CG8376-RE | 73..891 | 51..869 | 4065 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5717281..5717500 | 477..258 | 1070 | 99.1 | Minus |
| 2R | 25286936 | 2R | 5717555..5717767 | 259..47 | 1065 | 100 | Minus |
| 2R | 25286936 | 2R | 5708925..5709105 | 791..611 | 890 | 99.4 | Minus |
| 2R | 25286936 | 2R | 5716649..5716790 | 616..475 | 710 | 100 | Minus |
| 2R | 25286936 | 2R | 5708789..5708869 | 869..789 | 405 | 100 | Minus |
| 2R | 25286936 | 2R | 5725821..5725861 | 47..7 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:07:48 has no hits.
MXO01310.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:11 Download gff for
MXO01310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8376-PA | 1..861 | 9..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:11 Download gff for
MXO01310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ap-RA | 965..1834 | 1..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:31 Download gff for
MXO01310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ap-RA | 965..1834 | 1..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:31 Download gff for
MXO01310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5708789..5708867 | 791..869 | 100 | <- | Minus |
| 2R | 5708926..5709099 | 617..790 | 100 | <- | Minus |
| 2R | 5716649..5716788 | 477..616 | 100 | <- | Minus |
| 2R | 5717282..5717498 | 260..476 | 99 | <- | Minus |
| 2R | 5717555..5717766 | 48..259 | 100 | <- | Minus |
| 2R | 5725821..5725864 | 1..47 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:11 Download gff for
MXO01310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1596294..1596372 | 791..869 | 100 | <- | Minus |
| arm_2R | 1596431..1596604 | 617..790 | 100 | <- | Minus |
| arm_2R | 1604154..1604293 | 477..616 | 100 | <- | Minus |
| arm_2R | 1604787..1605003 | 260..476 | 99 | <- | Minus |
| arm_2R | 1605060..1605271 | 48..259 | 100 | <- | Minus |
| arm_2R | 1613326..1613369 | 1..47 | 93 | | Minus |
