Clone MXO01311 Report

Search the DGRC for MXO01311

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:11
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptgrn-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01311.3prime Sequence

806 bp (677 high quality bases) assembled on 2007-03-15

> MXO01311.3prime
ATGGTCTAGAAAGCTTGCCGTGTAGTCAGTGCGCCAGGTGCCCATCGAAC
TGAGACCCAAGTGGTACGGCTGCGAGTGGGGCACCACCGCTCCGCTGAGA
GAGCCGGCGGTGGAGAAGCCGCCCTGGAGTCCGCTCGAGGCTCCCAAAGC
GCCCATGCCGCCGGTGTACCAGCTGCCGTGCATGTGCGCATGTGCCGGAT
GCAGTCCGCTCGAGAGGTGTCCATGTTGTGCCATGGAGGCAGAGAAGCCA
CCGCCGAATCCCTTCGAGGGATCCAGCGGCTTGAAGTCGCCCATGCCCAG
GTGGCCACCGATTGGCAGGCAGCCACCACCGAGACCCTTCTTCTTTTTGG
ACTTGGAGCTCAGCTTGCGATTACGCGTCTGAATGCCCTCCTTTTTCATG
GTGAGTGGACGATTGACATTGTGAAGCTTATAGTACAATCCGCAGGCGTT
GCACACGGGTTCACCGCTGGCATTGCGTCGCCAAAGGGTTGTGGTTGTGG
TCTTGCAGTTGGCGCAGGATGTGCCCGCCCTTTTGGCCGCACTCTGCAGC
GATTGCAGGGTCAGTCTTCGCTTTGGCTTGATCAGGGGTCGGTTCTGGCC
GTTCATTTTGTAGTACAGGCCACAGGCGTTGCACAGATAGTGTCCCGTTC
CATCGCGTCGCCACAGTGGCGTCGATGTGGCGCCACAATTCACACACTCG
CGTCCCTCTTCGCGCTGCTTGGGCGTCGACGTGTGGGTGGTGCCGCTGCC
GGAGGATCCGCTCGCACTGCCGGTCTGGATCGACGGCTTGATATCCAACG
CACAGC

MXO01311.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG9656-PA 1461 grn-RA 671..1458 806..19 3915 99.8 Minus
CG3978-PB 1467 pnr-RB 380..422 665..623 165 95.3 Minus
CG3978-PA 1623 pnr-RA 536..578 665..623 165 95.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
grn-RA 3451 CG9656-RA 1091..1878 806..19 3925 99.9 Minus
grn-RC 4090 CG9656-RC 1828..2517 708..19 3450 100 Minus
grn-RB 4090 CG9656-RB 1828..2517 708..19 3450 100 Minus
grn-RC 4090 CG9656-RC 1091..1189 806..708 480 99 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8149269..8149458 42..231 950 100 Plus
3R 32079331 3R 8149547..8149733 231..417 935 100 Plus
3R 32079331 3R 8160963..8161110 562..709 740 100 Plus
3R 32079331 3R 8153256..8153402 416..562 735 100 Plus
3R 32079331 3R 8167371..8167469 708..806 480 99 Plus
3R 32079331 3R 16039052..16039185 708..575 370 85.1 Minus
3R 32079331 3R 16000639..16000763 708..584 250 80 Minus
3R 32079331 3R 16001776..16001916 519..379 225 77.3 Minus
3R 32079331 3R 16018006..16018161 518..363 210 75.6 Minus
3R 32079331 3R 16039351..16039436 462..377 190 81.4 Minus
Blast to na_te.dros performed on 2014-11-28 20:11:45 has no hits.

MXO01311.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:11 Download gff for MXO01311.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9656-PA 671..1461 16..806 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:37 Download gff for MXO01311.3prime
Subject Subject Range Query Range Percent Splice Strand
grn-RA 1091..1878 19..806 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:29 Download gff for MXO01311.3prime
Subject Subject Range Query Range Percent Splice Strand
grn-RA 1091..1878 19..806 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:29 Download gff for MXO01311.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8160963..8161108 562..707 100 <- Plus
3R 8167371..8167469 708..806 98   Plus
3R 8148941..8148964 19..42 100 <- Plus
3R 8149270..8149457 43..230 100 <- Plus
3R 8149547..8149733 231..417 100 <- Plus
3R 8153258..8153401 418..561 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:37 Download gff for MXO01311.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3986685..3986830 562..707 100 <- Plus
arm_3R 3993093..3993191 708..806 98   Plus
arm_3R 3974663..3974686 19..42 100 <- Plus
arm_3R 3974992..3975179 43..230 100 <- Plus
arm_3R 3975269..3975455 231..417 100 <- Plus
arm_3R 3978980..3979123 418..561 100 <- Plus

MXO01311.5prime Sequence

383 bp (323 high quality bases) assembled on 2007-03-15

> MXO01311.5prime
CAGTCGACATGGATATGACCTCAACACCGGAGGCTGCCGCTCGCAGCTGG
TACGATAGTCCGCGTTTAGGCGGCGGCGGCTCCTCGGGCGGTGGCAATGG
GGGCGGCGTCTCGCCCCAAACGAACGGCCTTGGCAGCGCCGGTAGCAGCC
TGGCCCACAGCCACCACAGCCTCTCCAGCGGCGCCAGCTCGGCGGGCAGC
AGCGTGGGCGTGGGCTCTGCTCTTGGCGGCGGCGGCGGATCCGGACTGGA
CACCAGCGACATGAGCGCCTTCTACGCGCTGGAGAGCAACGGACACCACC
GGCGCTACTATCCCAGCTATCATCAGCACACATCCCGCATGCCCTCCACC
CATGCCTCGCCTCAAGTGTGCCGGCCGCACTTC

MXO01311.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG9656-PA 1461 grn-RA 1..375 9..383 1850 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
grn-RC 4090 CG9656-RC 416..795 4..383 1870 99.5 Plus
grn-RB 4090 CG9656-RB 416..795 4..383 1870 99.5 Plus
grn-RA 3451 CG9656-RA 416..795 4..383 1870 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8179355..8179681 330..4 1605 99.4 Minus
3R 32079331 3R 8168065..8168117 383..331 265 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:11:51 has no hits.

MXO01311.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:11 Download gff for MXO01311.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9656-PA 1..375 9..383 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:39 Download gff for MXO01311.5prime
Subject Subject Range Query Range Percent Splice Strand
grn-RA 413..795 1..383 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:32 Download gff for MXO01311.5prime
Subject Subject Range Query Range Percent Splice Strand
grn-RA 413..795 1..383 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:32 Download gff for MXO01311.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8168065..8168117 331..383 100 <- Minus
3R 8179355..8179682 1..330 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:39 Download gff for MXO01311.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3993787..3993839 331..383 100 <- Minus
arm_3R 4005077..4005404 1..330 98   Minus