MXO01311.3prime Sequence
806 bp (677 high quality bases) assembled on 2007-03-15
> MXO01311.3prime
ATGGTCTAGAAAGCTTGCCGTGTAGTCAGTGCGCCAGGTGCCCATCGAAC
TGAGACCCAAGTGGTACGGCTGCGAGTGGGGCACCACCGCTCCGCTGAGA
GAGCCGGCGGTGGAGAAGCCGCCCTGGAGTCCGCTCGAGGCTCCCAAAGC
GCCCATGCCGCCGGTGTACCAGCTGCCGTGCATGTGCGCATGTGCCGGAT
GCAGTCCGCTCGAGAGGTGTCCATGTTGTGCCATGGAGGCAGAGAAGCCA
CCGCCGAATCCCTTCGAGGGATCCAGCGGCTTGAAGTCGCCCATGCCCAG
GTGGCCACCGATTGGCAGGCAGCCACCACCGAGACCCTTCTTCTTTTTGG
ACTTGGAGCTCAGCTTGCGATTACGCGTCTGAATGCCCTCCTTTTTCATG
GTGAGTGGACGATTGACATTGTGAAGCTTATAGTACAATCCGCAGGCGTT
GCACACGGGTTCACCGCTGGCATTGCGTCGCCAAAGGGTTGTGGTTGTGG
TCTTGCAGTTGGCGCAGGATGTGCCCGCCCTTTTGGCCGCACTCTGCAGC
GATTGCAGGGTCAGTCTTCGCTTTGGCTTGATCAGGGGTCGGTTCTGGCC
GTTCATTTTGTAGTACAGGCCACAGGCGTTGCACAGATAGTGTCCCGTTC
CATCGCGTCGCCACAGTGGCGTCGATGTGGCGCCACAATTCACACACTCG
CGTCCCTCTTCGCGCTGCTTGGGCGTCGACGTGTGGGTGGTGCCGCTGCC
GGAGGATCCGCTCGCACTGCCGGTCTGGATCGACGGCTTGATATCCAACG
CACAGC
MXO01311.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9656-PA | 1461 | grn-RA | 671..1458 | 806..19 | 3915 | 99.8 | Minus |
CG3978-PB | 1467 | pnr-RB | 380..422 | 665..623 | 165 | 95.3 | Minus |
CG3978-PA | 1623 | pnr-RA | 536..578 | 665..623 | 165 | 95.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grn-RA | 3451 | CG9656-RA | 1091..1878 | 806..19 | 3925 | 99.9 | Minus |
grn-RC | 4090 | CG9656-RC | 1828..2517 | 708..19 | 3450 | 100 | Minus |
grn-RB | 4090 | CG9656-RB | 1828..2517 | 708..19 | 3450 | 100 | Minus |
grn-RC | 4090 | CG9656-RC | 1091..1189 | 806..708 | 480 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8149269..8149458 | 42..231 | 950 | 100 | Plus |
3R | 32079331 | 3R | 8149547..8149733 | 231..417 | 935 | 100 | Plus |
3R | 32079331 | 3R | 8160963..8161110 | 562..709 | 740 | 100 | Plus |
3R | 32079331 | 3R | 8153256..8153402 | 416..562 | 735 | 100 | Plus |
3R | 32079331 | 3R | 8167371..8167469 | 708..806 | 480 | 99 | Plus |
3R | 32079331 | 3R | 16039052..16039185 | 708..575 | 370 | 85.1 | Minus |
3R | 32079331 | 3R | 16000639..16000763 | 708..584 | 250 | 80 | Minus |
3R | 32079331 | 3R | 16001776..16001916 | 519..379 | 225 | 77.3 | Minus |
3R | 32079331 | 3R | 16018006..16018161 | 518..363 | 210 | 75.6 | Minus |
3R | 32079331 | 3R | 16039351..16039436 | 462..377 | 190 | 81.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:11:45 has no hits.
MXO01311.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:11 Download gff for
MXO01311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9656-PA | 671..1461 | 16..806 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:37 Download gff for
MXO01311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grn-RA | 1091..1878 | 19..806 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:29 Download gff for
MXO01311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grn-RA | 1091..1878 | 19..806 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:29 Download gff for
MXO01311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8160963..8161108 | 562..707 | 100 | <- | Plus |
3R | 8167371..8167469 | 708..806 | 98 | | Plus |
3R | 8148941..8148964 | 19..42 | 100 | <- | Plus |
3R | 8149270..8149457 | 43..230 | 100 | <- | Plus |
3R | 8149547..8149733 | 231..417 | 100 | <- | Plus |
3R | 8153258..8153401 | 418..561 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:37 Download gff for
MXO01311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3986685..3986830 | 562..707 | 100 | <- | Plus |
arm_3R | 3993093..3993191 | 708..806 | 98 | | Plus |
arm_3R | 3974663..3974686 | 19..42 | 100 | <- | Plus |
arm_3R | 3974992..3975179 | 43..230 | 100 | <- | Plus |
arm_3R | 3975269..3975455 | 231..417 | 100 | <- | Plus |
arm_3R | 3978980..3979123 | 418..561 | 100 | <- | Plus |
MXO01311.5prime Sequence
383 bp (323 high quality bases) assembled on 2007-03-15
> MXO01311.5prime
CAGTCGACATGGATATGACCTCAACACCGGAGGCTGCCGCTCGCAGCTGG
TACGATAGTCCGCGTTTAGGCGGCGGCGGCTCCTCGGGCGGTGGCAATGG
GGGCGGCGTCTCGCCCCAAACGAACGGCCTTGGCAGCGCCGGTAGCAGCC
TGGCCCACAGCCACCACAGCCTCTCCAGCGGCGCCAGCTCGGCGGGCAGC
AGCGTGGGCGTGGGCTCTGCTCTTGGCGGCGGCGGCGGATCCGGACTGGA
CACCAGCGACATGAGCGCCTTCTACGCGCTGGAGAGCAACGGACACCACC
GGCGCTACTATCCCAGCTATCATCAGCACACATCCCGCATGCCCTCCACC
CATGCCTCGCCTCAAGTGTGCCGGCCGCACTTC
MXO01311.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9656-PA | 1461 | grn-RA | 1..375 | 9..383 | 1850 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grn-RC | 4090 | CG9656-RC | 416..795 | 4..383 | 1870 | 99.5 | Plus |
grn-RB | 4090 | CG9656-RB | 416..795 | 4..383 | 1870 | 99.5 | Plus |
grn-RA | 3451 | CG9656-RA | 416..795 | 4..383 | 1870 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8179355..8179681 | 330..4 | 1605 | 99.4 | Minus |
3R | 32079331 | 3R | 8168065..8168117 | 383..331 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:11:51 has no hits.
MXO01311.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:11 Download gff for
MXO01311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9656-PA | 1..375 | 9..383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:39 Download gff for
MXO01311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grn-RA | 413..795 | 1..383 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:32 Download gff for
MXO01311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grn-RA | 413..795 | 1..383 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:32 Download gff for
MXO01311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8168065..8168117 | 331..383 | 100 | <- | Minus |
3R | 8179355..8179682 | 1..330 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:39 Download gff for
MXO01311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3993787..3993839 | 331..383 | 100 | <- | Minus |
arm_3R | 4005077..4005404 | 1..330 | 98 | | Minus |