Clone MXO01312 Report

Search the DGRC for MXO01312

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:12
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptMlp84B-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01312.3prime Sequence

815 bp (679 high quality bases) assembled on 2007-03-15

> MXO01312.3prime
ATGGTCTAGAAAGCTTGCGAACGTTGTCAAAGCGCCCGCGCCCAGACCGT
AGCCCACTCCCTTGGGTCCAAAATTGCGGCCGTAGCAGGCTCGGCAGTAG
ATATCGCCGTCGGGTCCATCGTTCAGGTTGGTCGAGTCCAGCGATTTGCG
GCAATCCGAGCAGTAGAAGCACCTCTTGTGCCAGATCCTGGTCTTGCTGA
TCATCTGCTCGGCGGCGAACACGGCGAAACCGCAACGCGGGCAGCCGCCC
GAAGTCTTGGGTCCGGCCAGAGGACGGCCATCTGGGAACTGGATGGTGCT
CTCGCCACTGGTTGACACTAGAGTGGGGGCGTGGCCGTAACCAAAGCCCT
TGGGGCCGAAGAGCTTGCCGTAGCAGGCGCGGCAGTGGATGTCGCCATCG
GGTCCATCGCAGGCCAGGACCGAGTCCAATGGCCGGTGGCAGTCGGCGCA
GTTGTAGCACTTCTTGTGCCACACCTTGCCCTTGGACAGCTGTTGCTCGG
CGGCGAATACGGCTCCTCCGCACCGGGGACAGCCTTCGCCGTCACGGGCC
TTAATTGACGTGGTGTCCGGGTTATAGAAGGGCCTGTTGGCGCTGATCTG
ATCCTCGGTCAAGCCATCGGTCTGCAGGAAACCAGAGCCGCATGCGAATC
CATAGCCATGTGGTCCCCACTTCTTGCCGTAGCAAGTGCGGCAGTACACA
TCACGATCGGGACCATCACTGGCATTGATCGAGTCCAGAGTCTTGTGGCA
ATCCTTGCAGTTGAAGCACTTCTTGTGCCACTCCCGAACCTTGGAAAGCT
TCTGCTCCGCTGCGT

MXO01312.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG1019-PA 1488 Mlp84B-RA 689..1485 815..19 3935 99.7 Minus
CG1019-PB 1488 Mlp84B-RB 689..1485 815..19 3935 99.7 Minus
CG30174-PA 513 CG30174-RA 430..473 687..644 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
Mlp84B-RC 3071 CG1019-RC 850..1646 815..19 3955 99.7 Minus
Mlp84B-RB 2382 CG1019-RB 833..1629 815..19 3955 99.7 Minus
Mlp84B-RA 2399 CG1019-RA 850..1646 815..19 3955 99.7 Minus
Mlp84B-RC 3071 CG1019-RC 805..992 551..364 220 74.5 Minus
Mlp84B-RB 2382 CG1019-RB 788..975 551..364 220 74.5 Minus
Mlp84B-RC 3071 CG1019-RC 1160..1301 814..673 185 75.4 Minus
Mlp84B-RB 2382 CG1019-RB 1143..1284 814..673 185 75.4 Minus
Mlp84B-RC 3071 CG1019-RC 885..989 183..79 180 78.1 Minus
Mlp84B-RB 2382 CG1019-RB 868..972 183..79 180 78.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7114275..7115071 19..815 3955 99.7 Plus
2R 25286936 2R 24077095..24077356 570..309 410 77.1 Minus
2R 25286936 2R 24076778..24076945 780..613 300 78.6 Minus
2R 25286936 2R 24077477..24077677 247..47 255 75.1 Minus
3R 32079331 3R 7114929..7115116 364..551 220 74.5 Plus
3R 32079331 3R 7114620..7114761 673..814 185 75.4 Plus
Blast to na_te.dros performed on 2014-11-28 20:11:54 has no hits.

MXO01312.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:12 Download gff for MXO01312.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1019-PB 689..1488 15..815 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:40 Download gff for MXO01312.3prime
Subject Subject Range Query Range Percent Splice Strand
Mlp84B-RA 850..1649 15..815 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:33 Download gff for MXO01312.3prime
Subject Subject Range Query Range Percent Splice Strand
Mlp84B-RA 850..1649 15..815 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:33 Download gff for MXO01312.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7114271..7115071 15..815 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:40 Download gff for MXO01312.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2939993..2940793 15..815 99   Plus

MXO01312.5prime Sequence

717 bp (643 high quality bases) assembled on 2007-03-15

> MXO01312.5prime
CAGTCGACATGCCTTCCTTCCAACCGATCGAGGCCCCCAAGTGTCCGCGC
TGCGGCAAGAGTGTCTACGCTGCCGAAGAGCGTCTGGCTGGCGGCTATGT
ATTCCACAAGAACTGCTTCAAGTGCGGAATGTGCAACAAATCCCTGGACT
CCACCAACTGCACAGAGCACGAGCGCGAGCTCTACTGCAAGACGTGCCAC
GGTCGCAAGTTCGGGCCGAAAGGTTACGGCTTCGGCACTGGAGCTGGCAC
CCTCTCCATGGACAACGGGTCACAGTTCCTGCGCGAGAACGGCGATGTGC
CGTCCGTAAGGAATGGAGCCCGCCTGGAACCCAGGGCTATTGCTCGTGCC
CCCGAAGGTGAGGGCTGTCCTCGTTGCGGTGGCTATGTGTACGCCGCCGA
ACAGATGTTAGCCCGCGGTCGCAGCTGGCACAAGGAGTGCTTCAAGTGCG
GTACCTGCAAGAAGGGTCTGGACTCGATCCTGTGCTGCGAGGCTCCGGAC
AAGAACATCTACTGCAAGGGCTGCTATGCCAAGAAGTTTGGACCCAAGGG
CTATGGTTATGGCCAGGGCGGTGGTGCTCTCCAGTCCGACTGCTATGCTC
ACGACGACGGAGCACCGCAAATCCGTGCCGCCATTGATGTGGACAAGATC
CAGGCCCGTCCGGGTGAGGGTTGCCCACGTTGCGGCGGTGTGGTCTACGC
AGCGGAGCAGAAGCTTT

MXO01312.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG1019-PA 1488 Mlp84B-RA 1..709 9..717 3545 100 Plus
CG1019-PB 1488 Mlp84B-RB 1..709 9..717 3545 100 Plus
CG33149-PA 279 Mlp60A-RA 90..162 101..173 190 90.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
Mlp84B-RC 3071 CG1019-RC 162..870 9..717 3545 100 Plus
Mlp84B-RB 2382 CG1019-RB 145..853 9..717 3545 100 Plus
Mlp84B-RA 2399 CG1019-RA 162..870 9..717 3545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7115051..7115759 717..9 3545 100 Minus
2R 25286936 2R 24075451..24075586 129..264 245 78.7 Plus
2R 25286936 2R 24075245..24075336 34..125 190 80.4 Plus
Blast to na_te.dros performed on 2014-11-28 21:05:14 has no hits.

MXO01312.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:12 Download gff for MXO01312.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1019-PB 1..709 9..717 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:52 Download gff for MXO01312.5prime
Subject Subject Range Query Range Percent Splice Strand
Mlp84B-RA 154..870 1..717 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:08 Download gff for MXO01312.5prime
Subject Subject Range Query Range Percent Splice Strand
Mlp84B-RA 154..870 1..717 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:08 Download gff for MXO01312.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7115051..7115767 1..717 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:52 Download gff for MXO01312.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2940773..2941489 1..717 99   Minus