Clone MXO01313 Report

Search the DGRC for MXO01313

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:13
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptcroc-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01313.3prime Sequence

800 bp (774 high quality bases) assembled on 2007-03-15

> MXO01313.3prime
ATGGTCTAGAAAGCTTGCCACCCCGTACTTGATGCCGTACTCCTGGTAGT
GGCCCACATGCGGTCGGTAGTGGCTCAGATTGCTCAGCTGACCCAGCTGG
CCCAGGTTCCCGCTAAGCGCCGCATGGTGATGATGGTGGTGGTGGTGGCT
ACTGATCACCGCCGCCGCTGCTGCCGCTGATGCCGCTGCCACGGATGCGG
AGGCAGGTGGACTGGCGGATTGTAGGCTGCCGGTGGGACTACCGGTGTCC
AGTTGGCAGGATTGGTTCTGCTCGAAGATCATGTCGCGGAAACCCAGTGC
CGATGTGGGACTGCTGGTCAGCACGCTGGAGGATCCTCCACCGCCACCGC
CGCCGCCTCCGCCACCGTTGCCCACTCCATTGTGCCCCCCCACCCTGCTG
CTGTTGTTGTTATTATGTCAACGGGTGGGTGGGTGTGCCCTGCTGCCCAT
TGTGAGGAACGGGTTCCGATGGTGGCGTTTCCGGGGTATACCAACCCCCG
TGCGCGGGACCATGCGGAGTTGAGATCGTGGTGGGCGAGTGTCCGGACGA
TTGGCCTCCCGCTCCTTGGCCGCCGGGGGTCAGAGGATGGGCCACGTGCG
CCACATGACGCTGCAGTTGCTGGGCATGATGGGCCGCCGCAGCGTGGTGG
ACATGATGCATCTGACTGCTGGCCACCGTGGCCAAGTTGTCCTCGTTCAA
GTGGTAGGGATAGGCGCTGTGATGGATCCGCGGGTTGTACACATTCATGA
GTGAGTCCACGGTGAAGCCGGGATGCTCCACTCCGCCGCCAGCCAAGTGG

MXO01313.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5069-PA 1527 croc-RA 744..1122 800..422 1895 100 Minus
CG5069-PA 1527 croc-RA 1159..1524 384..19 1830 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
croc-RA 2347 CG5069-RA 1029..1809 800..19 3750 98.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21474671..21475451 19..800 3725 98.7 Plus
Blast to na_te.dros performed on 2014-11-28 22:02:16 has no hits.

MXO01313.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:13 Download gff for MXO01313.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5069-PA 744..1527 15..800 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:30 Download gff for MXO01313.3prime
Subject Subject Range Query Range Percent Splice Strand
croc-RA 1029..1814 13..800 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:04 Download gff for MXO01313.3prime
Subject Subject Range Query Range Percent Splice Strand
croc-RA 1029..1814 13..800 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:04 Download gff for MXO01313.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21474666..21475451 13..800 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:30 Download gff for MXO01313.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21467766..21468551 13..800 98   Plus

MXO01313.5prime Sequence

871 bp (736 high quality bases) assembled on 2007-03-15

> MXO01313.5prime
CAGTCGACATGCATACGTTATTCACCCACCAGAACTCCTTTACGCGCCAC
TATGCCCAGACCGCAGCCGGTTACGGATCCGCATCCGCGGTGGCGGCGGC
CACCAGCGCCTCCGCTGCAGCAGCGGCACATTACGCATACGACCAGTACT
CCCGCTATCCGTACTCGGCCAGCGCCTACGGCCTGGGTGCCCCGCACCAG
AACAAGGAGATTGTAAAGCCACCTTACTCGTACATCGCCCTGATAGCCAT
GGCCATCCAGAATGCGGCGGACAAGAAGGTGACCCTGAACGGGATCTATC
AGTACATCATGGAGCGATTTCCCTACTATCGCGACAACAAGCAGGGCTGG
CAGAACTCCATTCGGCACAATCTTAGCCTCAACTTTTGTCTCCCCCCCCC
GGCCCGCGATGACAAGAAGCCAGAAAAGGGGTCCTACTGGACTCTGGATC
CGGACTCCTACAACATGTTCGACAACGGCTCCTTCCTTCGCCGGCGTCGC
CGCTTCAAGAAGAAGGATGTGATGCGGGAGAAGGAGGAGGCCATCAAGCG
GCAGGCCATGATGAACGAGAAGCTGGCCGAGATGAAGCCCCTCAAGCTGA
TGACCAACGGCATACTGGAGGCCAAGCACATGGCCGCCCATGCTGCCCAC
TTCAAAAAGGAGCCCCTAATGGACTTGGGTTGTCTAAGTGGCAAGGAGGT
CTCCCATGCCGCAATGCTCAACTCCTGCCACGACAGCTTGGGCCCAATGA
ACCACTTGGCTGGCGGCGGAGTGGAGCATCCCGGCTTCACCGTGGACTCA
CTCATGAATGTGTACAACCCGCGGATCCATCACAGCGCCTATCCCTACCA
CTTGAACGAGGACAACTTGGC

MXO01313.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5069-PA 1527 croc-RA 418..863 426..871 2155 99.3 Plus
CG5069-PA 1527 croc-RA 1..375 9..383 1800 99.2 Plus
CG1132-PA 1098 fd64A-RA 391..428 336..373 165 97.3 Plus
CG16738-PA 969 slp1-RA 477..521 335..379 150 93.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
croc-RA 2347 CG5069-RA 285..1148 8..871 3990 97.5 Plus
fd64A-RB 1414 CG1132-RB 486..654 215..383 230 76.5 Plus
fd64A-RA 1372 CG1132-RA 444..612 215..383 230 76.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21475332..21476195 871..8 3990 97.5 Minus
2L 23513712 2L 3826211..3826308 286..383 190 79.6 Plus
Blast to na_te.dros performed on 2014-11-28 21:22:18 has no hits.

MXO01313.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:13 Download gff for MXO01313.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5069-PA 1..863 9..871 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:29:56 Download gff for MXO01313.5prime
Subject Subject Range Query Range Percent Splice Strand
croc-RA 279..1148 1..871 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:32 Download gff for MXO01313.5prime
Subject Subject Range Query Range Percent Splice Strand
croc-RA 279..1148 1..871 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:32 Download gff for MXO01313.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21475332..21476201 1..871 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:29:56 Download gff for MXO01313.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21468432..21469301 1..871 97   Minus