MXO01313.3prime Sequence
800 bp (774 high quality bases) assembled on 2007-03-15
> MXO01313.3prime
ATGGTCTAGAAAGCTTGCCACCCCGTACTTGATGCCGTACTCCTGGTAGT
GGCCCACATGCGGTCGGTAGTGGCTCAGATTGCTCAGCTGACCCAGCTGG
CCCAGGTTCCCGCTAAGCGCCGCATGGTGATGATGGTGGTGGTGGTGGCT
ACTGATCACCGCCGCCGCTGCTGCCGCTGATGCCGCTGCCACGGATGCGG
AGGCAGGTGGACTGGCGGATTGTAGGCTGCCGGTGGGACTACCGGTGTCC
AGTTGGCAGGATTGGTTCTGCTCGAAGATCATGTCGCGGAAACCCAGTGC
CGATGTGGGACTGCTGGTCAGCACGCTGGAGGATCCTCCACCGCCACCGC
CGCCGCCTCCGCCACCGTTGCCCACTCCATTGTGCCCCCCCACCCTGCTG
CTGTTGTTGTTATTATGTCAACGGGTGGGTGGGTGTGCCCTGCTGCCCAT
TGTGAGGAACGGGTTCCGATGGTGGCGTTTCCGGGGTATACCAACCCCCG
TGCGCGGGACCATGCGGAGTTGAGATCGTGGTGGGCGAGTGTCCGGACGA
TTGGCCTCCCGCTCCTTGGCCGCCGGGGGTCAGAGGATGGGCCACGTGCG
CCACATGACGCTGCAGTTGCTGGGCATGATGGGCCGCCGCAGCGTGGTGG
ACATGATGCATCTGACTGCTGGCCACCGTGGCCAAGTTGTCCTCGTTCAA
GTGGTAGGGATAGGCGCTGTGATGGATCCGCGGGTTGTACACATTCATGA
GTGAGTCCACGGTGAAGCCGGGATGCTCCACTCCGCCGCCAGCCAAGTGG
MXO01313.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5069-PA | 1527 | croc-RA | 744..1122 | 800..422 | 1895 | 100 | Minus |
CG5069-PA | 1527 | croc-RA | 1159..1524 | 384..19 | 1830 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
croc-RA | 2347 | CG5069-RA | 1029..1809 | 800..19 | 3750 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21474671..21475451 | 19..800 | 3725 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:02:16 has no hits.
MXO01313.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:13 Download gff for
MXO01313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5069-PA | 744..1527 | 15..800 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:30 Download gff for
MXO01313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
croc-RA | 1029..1814 | 13..800 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:04 Download gff for
MXO01313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
croc-RA | 1029..1814 | 13..800 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:04 Download gff for
MXO01313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21474666..21475451 | 13..800 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:30 Download gff for
MXO01313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21467766..21468551 | 13..800 | 98 | | Plus |
MXO01313.5prime Sequence
871 bp (736 high quality bases) assembled on 2007-03-15
> MXO01313.5prime
CAGTCGACATGCATACGTTATTCACCCACCAGAACTCCTTTACGCGCCAC
TATGCCCAGACCGCAGCCGGTTACGGATCCGCATCCGCGGTGGCGGCGGC
CACCAGCGCCTCCGCTGCAGCAGCGGCACATTACGCATACGACCAGTACT
CCCGCTATCCGTACTCGGCCAGCGCCTACGGCCTGGGTGCCCCGCACCAG
AACAAGGAGATTGTAAAGCCACCTTACTCGTACATCGCCCTGATAGCCAT
GGCCATCCAGAATGCGGCGGACAAGAAGGTGACCCTGAACGGGATCTATC
AGTACATCATGGAGCGATTTCCCTACTATCGCGACAACAAGCAGGGCTGG
CAGAACTCCATTCGGCACAATCTTAGCCTCAACTTTTGTCTCCCCCCCCC
GGCCCGCGATGACAAGAAGCCAGAAAAGGGGTCCTACTGGACTCTGGATC
CGGACTCCTACAACATGTTCGACAACGGCTCCTTCCTTCGCCGGCGTCGC
CGCTTCAAGAAGAAGGATGTGATGCGGGAGAAGGAGGAGGCCATCAAGCG
GCAGGCCATGATGAACGAGAAGCTGGCCGAGATGAAGCCCCTCAAGCTGA
TGACCAACGGCATACTGGAGGCCAAGCACATGGCCGCCCATGCTGCCCAC
TTCAAAAAGGAGCCCCTAATGGACTTGGGTTGTCTAAGTGGCAAGGAGGT
CTCCCATGCCGCAATGCTCAACTCCTGCCACGACAGCTTGGGCCCAATGA
ACCACTTGGCTGGCGGCGGAGTGGAGCATCCCGGCTTCACCGTGGACTCA
CTCATGAATGTGTACAACCCGCGGATCCATCACAGCGCCTATCCCTACCA
CTTGAACGAGGACAACTTGGC
MXO01313.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5069-PA | 1527 | croc-RA | 418..863 | 426..871 | 2155 | 99.3 | Plus |
CG5069-PA | 1527 | croc-RA | 1..375 | 9..383 | 1800 | 99.2 | Plus |
CG1132-PA | 1098 | fd64A-RA | 391..428 | 336..373 | 165 | 97.3 | Plus |
CG16738-PA | 969 | slp1-RA | 477..521 | 335..379 | 150 | 93.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
croc-RA | 2347 | CG5069-RA | 285..1148 | 8..871 | 3990 | 97.5 | Plus |
fd64A-RB | 1414 | CG1132-RB | 486..654 | 215..383 | 230 | 76.5 | Plus |
fd64A-RA | 1372 | CG1132-RA | 444..612 | 215..383 | 230 | 76.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21475332..21476195 | 871..8 | 3990 | 97.5 | Minus |
2L | 23513712 | 2L | 3826211..3826308 | 286..383 | 190 | 79.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:22:18 has no hits.
MXO01313.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:13 Download gff for
MXO01313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5069-PA | 1..863 | 9..871 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:29:56 Download gff for
MXO01313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
croc-RA | 279..1148 | 1..871 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:32 Download gff for
MXO01313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
croc-RA | 279..1148 | 1..871 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:32 Download gff for
MXO01313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21475332..21476201 | 1..871 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:29:56 Download gff for
MXO01313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21468432..21469301 | 1..871 | 97 | | Minus |