MXO01315.3prime Sequence
862 bp (748 high quality bases) assembled on 2007-03-15
> MXO01315.3prime
ATGGTCTAGAAAGCTTGCATCGCTGACGGCCACCAAATCTCTGGAGGATG
CTGCAGTACTGGCGGAGCCCGTGGGCAAGCCCAACTCCGAGCTGGAGCTG
GAGCCGGAGCCAAATGGATCACTTAGGTTGCCACCCACCACACCGCCCAC
TCCGGCGGACAAGTTATGCGTCAGGCTGTGACGTCGCAAGTCGCAGTTCC
GCCGGAAGACTTTCCCGCAGGAGGCGCAGTTGTACGGCTTGATGTCGGTG
TGGGTGAGCAGGTGGGTCTTCAGATTGGAACGCTGGTTGAAGGAGCGATT
GCACACGGGGCACTTGTGCGGCGACTCCTCCATGTGCAGGATCTTGTGGA
CAGCCAGAGTGCGGGACTGACAGAATCCCTTGCCGCACCCCCCGCACTTG
AAGGGCTTCTCCTTGGAGTGGATATATCTATGATCCCTCAGATGATCCTG
CCTCCTGAAGGCCTTGCCGCAGATGTCGCAGGAGTAAGGCCTCTCGTCCG
TGTGCGTTCTTTCGTGGATGAGCAGATTGTAGGACTTGGTGAACTGTCGG
TTGCAGAATTTGCATATGAACTGCTTCTTGGACCGCTGGGCTGCCGCTGC
CGCCGCCGAGCTGCCCGCCTCCTCCAGCCCTCCTACCGCACCTGCACCTA
CGCCGCCAGCCGCTCCCGAAATGACACTCATCTTGTCCTGGTACATGGTG
GCCTGCAGCGAGTGCAGAGCCGAGTCCGTTTCCGCCTGGCTGAAGGCTGA
GGGATTAAACATGAAGCTTCCATAGCTGCTGTCCAATCTCCCGCCTCGAA
GGAGAGAGCATCCTCGCCATCGAGCAACGGTAAGTCGCACTCTGCTGCCA
GTTCTGCGGCTG
MXO01315.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3242-PA | 1737 | sob-RA | 967..1734 | 786..19 | 3790 | 99.7 | Minus |
| CG3851-PA | 1179 | odd-RA | 649..789 | 579..439 | 405 | 91.4 | Minus |
| CG3242-PA | 1737 | sob-RA | 890..967 | 862..785 | 390 | 100 | Minus |
| CG10021-PB | 2235 | bowl-RB | 709..884 | 573..398 | 330 | 87.5 | Minus |
| CG10021-PC | 2235 | bowl-RC | 709..884 | 573..398 | 330 | 87.5 | Minus |
| CG10021-PD | 2235 | bowl-RD | 709..884 | 573..398 | 330 | 87.5 | Minus |
| CG10021-PA | 2235 | bowl-RA | 709..884 | 573..398 | 330 | 87.5 | Minus |
| CG10021-PB | 2235 | bowl-RB | 926..1034 | 356..248 | 270 | 89.9 | Minus |
| CG10021-PC | 2235 | bowl-RC | 926..1034 | 356..248 | 270 | 89.9 | Minus |
| CG10021-PD | 2235 | bowl-RD | 926..1034 | 356..248 | 270 | 89.9 | Minus |
| CG10021-PA | 2235 | bowl-RA | 926..1034 | 356..248 | 270 | 89.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sob-RA | 2611 | CG3242-RA | 1480..2324 | 862..19 | 4170 | 99.6 | Minus |
| bowl-RH | 3435 | CG10021-RH | 1059..1454 | 586..191 | 1035 | 84.4 | Minus |
| bowl-RG | 3394 | CG10021-RG | 1018..1413 | 586..191 | 1035 | 84.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3578855..3579290 | 428..862 | 2130 | 99.8 | Plus |
| 2L | 23513712 | 2L | 3578300..3578710 | 19..429 | 2025 | 99.5 | Plus |
| 2L | 23513712 | 2L | 3605205..3605524 | 260..579 | 820 | 83.8 | Plus |
| 2L | 23513712 | 2L | 3781905..3782140 | 426..191 | 595 | 83.5 | Minus |
| 2L | 23513712 | 2L | 3780421..3780576 | 586..431 | 450 | 85.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:54:32 has no hits.
MXO01315.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:14 Download gff for
MXO01315.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3242-PA | 890..1737 | 16..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:23 Download gff for
MXO01315.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sob-RA | 1480..2331 | 11..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:46 Download gff for
MXO01315.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sob-RA | 1480..2331 | 11..862 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:46 Download gff for
MXO01315.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3578301..3578708 | 20..427 | 99 | <- | Plus |
| 2L | 3578855..3579290 | 428..862 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:23 Download gff for
MXO01315.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3578301..3578708 | 20..427 | 99 | <- | Plus |
| arm_2L | 3578855..3579290 | 428..862 | 99 | | Plus |
MXO01315.5prime Sequence
896 bp (814 high quality bases) assembled on 2007-03-15
> MXO01315.5prime
CAGTCGACATGGAGGCAGTTAAGCATTTGAGTGCCGCTGCTGCTGCTGCA
GCTGCAGCTGCAACTTGCAGCGATTCGCCGGCCAAGGCAGCAGCCTCACC
GGCAGCAAGCAGCGATATTGCCGAGGCGCTTGGAGAACTCAAGGCAAGCG
CAACAGCAGCAGCATCATCAGCTAGCAAGGCAGCAACATCGAAGCACCAC
AGCAACAACAACCACAAGCCAAGTGCCGCAGCAACAGCCACAGCAGCGCA
CAAGAAAAGCGAGAGTTGCAACAGCAACGGCAACAAGTGCACCGCTGCAA
CATCGCCGATCGGCAGTAAGACCAGCAACGCAGCCATGGCAGCTGCAACA
GCAACGGCGGCCGCAGCAACCAACGATCTTGCAGCGGCTGCTGCCCCCCC
CCTTTCGCTGCAAGGAACCATGGTCAACAGATTGCAGCAGGCCGCCCTAC
TGCCGGCCAATTCGGCGGCAGCAGCAGCTCTTAATCTCCAGGCCCTGGAA
TCCTATTTGGCGCTGCAGCGACTAACCGGGAAATCGGATGTATTTCGCTT
TTCCAACAGCAACACCGGCAGCAGCAACAGCAACAACGCCACCACCTGCA
ACAGCAGCAGCAGTGAAGCGGACAACAATGCCTTACCCTCGCTCATCGAT
ATAGCCAATATAGAGCTCAAGTCGAGCTGCTCCTCCAGCTCCTCGGGGGA
ACCCCCTTTGACGGCAGCGACAGCATCAGCTGCCGCCACATCCTCGCCCA
GCAGCAACAACAGCAACTCCACCAGCACACCAACAACATCCAAGTGCGTG
CCTCTGCCCTCCATTGGCACCGTTAGTGCTGCAGTGGCGGCTGCTGCGGC
TGCCGCACCAGCTGCTGCGACCCAACAGGCGGCGCTGGACTGCGCA
MXO01315.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3242-PA | 1737 | sob-RA | 394..888 | 402..896 | 2375 | 99.1 | Plus |
| CG3242-PA | 1737 | sob-RA | 1..386 | 9..394 | 1930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sob-RA | 2611 | CG3242-RA | 591..1478 | 9..896 | 4290 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3579292..3580179 | 896..9 | 4290 | 98.9 | Minus |
Blast to na_te.dros performed 2014-11-28 23:19:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2274..2877 | 15..635 | 342 | 56.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2750..2974 | 134..371 | 238 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6857 | 258..385 | 219 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2443..2665 | 552..777 | 213 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1599 | 715..788 | 186 | 73.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6800 | 715..790 | 171 | 72.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..7019 | 321..602 | 165 | 55.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..6875 | 711..790 | 164 | 69.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1154 | 715..787 | 164 | 73.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2436 | 712..790 | 162 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6820 | 271..372 | 161 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2324..2400 | 711..790 | 159 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6844..6923 | 711..787 | 158 | 70 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 98..224 | 694..816 | 155 | 63.3 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9128..9254 | 694..816 | 155 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6745..6821 | 711..790 | 150 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6531..6858 | 552..889 | 147 | 55.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6791 | 319..394 | 141 | 70.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2376 | 723..790 | 140 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1581 | 727..790 | 139 | 72.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6779 | 749..790 | 131 | 81.4 | Plus |
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 538..622 | 784..694 | 127 | 62.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1502..1560 | 733..790 | 121 | 69.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2367 | 749..790 | 113 | 76.7 | Plus |
MXO01315.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:14 Download gff for
MXO01315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3242-PA | 1..887 | 9..895 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:48 Download gff for
MXO01315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sob-RA | 591..1477 | 9..895 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:17 Download gff for
MXO01315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sob-RA | 591..1477 | 9..895 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:17 Download gff for
MXO01315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3579293..3580179 | 9..895 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:48 Download gff for
MXO01315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3579293..3580179 | 9..895 | 98 | | Minus |
