MXO01316.3prime Sequence
830 bp (773 high quality bases) assembled on 2007-03-15
> MXO01316.3prime
ATGGTCTAGAAAGCTTGCATTTCTTTAGGTTGTGAAGTCGCAAGTGCTTT
TTTAAGCTCTTCTGGGAGAAAAATCCCTCTGGACATTGCGGGCATGGGTG
GGGTCGAATCTTGTGGCTTGTGATATGCTTATCCAGGGTCTTTTTTAAAG
CAAACCTGACGTCGCAGTGCGGGCATTGGTGCAGCGTTTTTGGCTCATCC
GGGTTTTTGTGCGTCTTCTCGTGACCCCGTAAGCTCTGCTGAGTGTCATA
GGCTTTGGGACACTGAGAACATTTAAATGGCCGATCATTATTGTCCACGT
GCCAAAGGGTATGCTTCATCAGTGACTGATTCGCACTGAAACCCTTGCCG
CACTGGTCGCACTTGTAGGGCTTTTCGCCTGTATGCCCCCCCAGATGACT
CTTAAGGTGATGGTTGTGGGAAAAGGCTTGGCCGCACTCCTCACATTTAA
ATGGCTTTATACCCGAATGGGTTCGCTGATGTTTCATCATGTTCGATTTC
TCGAAGAACGACTTGTCGCAGTCGGGGCACTTGAACTGGCGATCCCCGTT
GTGGACCCGCAAATGGGTAATCAAATGCTGGTTCTGTACGAATCCCTTGC
CGCAGAGCTCACATTTAAAGGGTCGCTCTTCCTTGTGCAGACGGCTATGC
AACTTAAGGCCAGAGTTTTTGGCAAAGGTTTGTGGGCAGTCGGGACACTT
ATAGGGTCGTTCGCCAGTGTGCCTCTGTATATGGGCCCTAAGATTGCCTC
TCGTGTAAAAGGTTTTGTCGCACTGTGGACATTTGTGACCCTTTTCCTCG
TCGTGGGTGTGCATATGCGACTTCAGAGTC
MXO01316.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8474-PA | 1752 | Meics-RA | 939..1376 | 830..393 | 2190 | 100 | Minus |
| CG8474-PA | 1752 | Meics-RA | 1384..1750 | 385..19 | 1835 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Meics-RB | 1904 | CG8474-RB | 976..1787 | 830..19 | 3970 | 99.3 | Minus |
| Meics-RA | 1940 | CG8474-RA | 1012..1823 | 830..19 | 3970 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13962775..13963586 | 19..830 | 3970 | 99.3 | Plus |
Blast to na_te.dros performed 2014-11-28 21:43:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R2-element | 3607 | R2-element DMRER2DM 3607bp Derived from X51967 (g8432) (Rel. 24, Last updated, Version 1). | 2978..3029 | 340..289 | 116 | 69.2 | Minus |
MXO01316.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:15 Download gff for
MXO01316.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8474-PA | 939..1752 | 15..830 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:12 Download gff for
MXO01316.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Meics-RA | 1012..1825 | 15..830 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:19 Download gff for
MXO01316.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Meics-RA | 1012..1825 | 15..830 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:19 Download gff for
MXO01316.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13962773..13963586 | 15..830 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:12 Download gff for
MXO01316.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13955873..13956686 | 15..830 | 99 | | Plus |
MXO01316.5prime Sequence
915 bp (810 high quality bases) assembled on 2007-03-15
> MXO01316.5prime
CAGTCGACATGGTTGGGAGATCATCGCCAAAAATGGAAAGATCAGTGGAC
GCCAGCATGGGAAAGAACTGCCGAGCCTGCGCCGAACACTCATCCATACT
GGTGGACCTTTTCTCCAAGGAGATCTCTGATCCCCCCATTTGGGAAATGT
TGAACTCAATTCTGCCGGAGATCTGTCGCGTGAAACGGGATGAAATGCCA
CAAAAGATCTGTCCTACCTGCCTGGTGGCCGCTCAAAATGCCTTTCACTT
CCGTCACAAGTGTGAGCAGAGTTTTCAGTTCTTTTCCCAGCTCCTCCAGC
TCGATAAATCAAACTCAAATCTGAGTAGATCCCATTGCAGAAGAGGTACT
ATGAACCCATTAATACCCTTCGAGATAGTTGGTTGCTATTTTTCCCCCCC
CCCCAAATGTAACCAAATTGGACGCTAAACGGGCTGATGTAAAAACTGAT
ATCGATGAGCCAACCGATGGAAAGGCAACTAATGGTCAGGAGAGTGAACC
ATTGCAAGAAGTTTTTGAAATAACAATGAACGATATTAAAACGGAAGATG
AAGTATCCATTCAGGAGACATTTGAAGATGCCTTTGATGAAGAAAATGAT
AATAACAATACTGATAGCGAAAGGGAGGATTCAGACCAATGGACAGTGGG
CTCGACTGAAGACCAAGATGAACCCTGGATTCCCGGCGGCGGAGGGCGCC
AAACGGTTGGCGGCAATAATCAATCGCTTCTGTGCACAGAGTGTGGAGTG
AGTTACTCGACTCAAAAGGCGTTGGCAAGGCACGTTGCCAAGCACAAGGA
GCAAGGTGATACACAAAAGCCGCACCTCTGCGATTTCTGCGGTCGGGGAT
TTCGTACCCATGCCCAGCTAACGACCCATAGACGCCGTCATACTGGAGAG
CGTCCTTTTAATGCC
MXO01316.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8474-PA | 1752 | Meics-RA | 395..902 | 404..911 | 2465 | 99.4 | Plus |
| CG8474-PA | 1752 | Meics-RA | 1..378 | 9..386 | 1840 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Meics-RA | 1940 | CG8474-RA | 74..975 | 9..911 | 4250 | 98.1 | Plus |
| Meics-RB | 1904 | CG8474-RB | 74..548 | 9..484 | 2130 | 96.6 | Plus |
| Meics-RB | 1904 | CG8474-RB | 549..939 | 521..911 | 1940 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13964119..13964629 | 520..9 | 2285 | 96.9 | Minus |
| 3L | 28110227 | 3L | 13963623..13964013 | 911..521 | 1940 | 99.7 | Minus |
Blast to na_te.dros performed 2014-11-28 20:31:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| invader2 | 5124 | invader2 INVADER2 5124bp | 4095..4178 | 561..646 | 118 | 62.8 | Plus |
MXO01316.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:15 Download gff for
MXO01316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8474-PA | 1..907 | 9..915 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:03 Download gff for
MXO01316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Meics-RA | 71..980 | 4..915 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:15 Download gff for
MXO01316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Meics-RA | 71..980 | 4..915 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:15 Download gff for
MXO01316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13963618..13964013 | 521..915 | 99 | <- | Minus |
| 3L | 13964119..13964632 | 4..520 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:03 Download gff for
MXO01316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13956718..13957113 | 521..915 | 99 | <- | Minus |
| arm_3L | 13957219..13957732 | 4..520 | 96 | | Minus |
