MXO01318.3prime Sequence
847 bp (817 high quality bases) assembled on 2007-03-15
> MXO01318.3prime
ATGGTCTAGAAAGCTTGCCCGACATCCGCCGGTTAATGTGCGATCCGTGG
ACATGGTGGAGATCGTTTGTGCCTGTTGCTGCTGCGCCGACTGCTGCTGC
TGCGCCTGCGTCGCCGCCGCCTGGGCACCAGTCATGGTCGAGTTGATAAA
GATCGGCGTGCCACTGGCCACCGCACTGGCGTTGCTCTGCTGCGTGAGAT
TGGCGTGCTGCTGCTGTTGCTGCTGCTGCTGATGGGCCACTGTGGGTGCT
CCGCCCAGCTGGAGCAGTTGCTGTGTCGTCAGCAGTTGGGTTGGTATGAT
GACCTGTTGTTGCTGCTGCTGCTGTTGCTGCTGCTGTTGTTGCTGCTGCT
GCTGCTGTTGCATTTGTAGTCGCTGCATGATTTTCCCCCCCTGGCATTGA
TGGCGATCGGCACATTAATCAGCTCCCCCGTGGGCGTAACCACTTGCTGC
AGCAGCTGAATCTGCTGCTGATGTTGCTGGTGCTGCTGTTGCTGCTGGGC
GAGATTCTGGAGCAGCGCCGTCTGTTGCTGGGCAGTCGTTTGCGGCGCTG
GCGTTGCGGTCAGCTGACCATTGGGACCGGCGGTCAGTATCAACTGCTGG
GTGGGTTGTTGGGTTGACAAAATGTTGATGGGTAGATGATTCTGCGCGGG
CTGCGGCTGCTGCACGAGCTGCGCCGCCTGCTGACTCGGCAGTGCGATAA
AGTATTGCAACTGTTGGCCACCAGCGCCCTGCTGAATAATCTGAACCTGC
TGTGGATGTGCCTGGTGATGTTGCTGCTGCTGTTGTTGCTGCTGCTGCTG
GGCGGCGTGCTGTTGCTGCTGTTGTTGTTGCTGCTGCAGTTGCGCTG
MXO01318.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3075-PA | 1806 | CG3075-RA | 974..1430 | 847..391 | 2260 | 99.7 | Minus |
| CG3075-PA | 1806 | CG3075-RA | 1445..1798 | 377..24 | 1770 | 100 | Minus |
| CG1693-PB | 2511 | tty-RB | 2191..2229 | 800..762 | 145 | 94.8 | Minus |
| CG1693-PA | 2913 | tty-RA | 2191..2229 | 800..762 | 145 | 94.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nf-YC-RA | 2522 | CG3075-RA | 1167..1996 | 847..19 | 3975 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6819156..6819595 | 408..847 | 2185 | 99.8 | Plus |
| X | 23542271 | X | 6818704..6819062 | 19..377 | 1780 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:08:38 has no hits.
MXO01318.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:16 Download gff for
MXO01318.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3075-PA | 974..1806 | 15..847 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:44 Download gff for
MXO01318.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nf-YC-RA | 1167..2004 | 12..847 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:22 Download gff for
MXO01318.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nf-YC-RA | 1167..2004 | 12..847 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:22 Download gff for
MXO01318.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6818696..6819093 | 12..407 | 96 | <- | Plus |
| X | 6819156..6819595 | 408..847 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:44 Download gff for
MXO01318.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6712729..6713126 | 12..407 | 96 | <- | Plus |
| arm_X | 6713189..6713628 | 408..847 | 99 | | Plus |
MXO01318.5prime Sequence
899 bp (702 high quality bases) assembled on 2007-03-15
> MXO01318.5prime
CAGTCGACATGTACGCCACCAACAATCGCGGCACGAACAAGGCGCCAAAC
AGCAATGCCACCTCCATGTTCGACAACACCATCACAGTGACGCCCATAAA
GATGGAACTGGGCCAGGCGTATGCCAAATCGCAAAATTCAGCGGCTATGC
AGCGAAGAACACCGAATGCAGTGGTGGTCACCTCCTCCTCCACCGTCTCC
TCCGCCCAGCAGCAGCAGCAACAGCAGGGCCAGCAGCAACAGCAGACGGT
TCCCATGGCCAGTTTGGTGTCCAACGCCTGTACGCTGGTTAATCCCAGCA
TGAGTGTGACGGTGGCCACCACCGTTGCGAGTTTTGTCAAGGAGAAGACC
ACGAAGGCCACACGAACTCAGGTGGCACGCAAATTTTTTTCCCCCCCCCC
CACCTTCTGGNNAAATATCGTAAAAAAAAAGAAGGGGATCGGCCAGGTGG
ATGCCAAGCACCAGGTGCTGCCGCTGGCGCGCATCAAGAAAATCATGAAG
CTGGACGAGAACGCCAAGATGATTGCCGGCGAGGCGCCGCTACTGTTTGC
CAAAGCCTGCGAGTACTTCATTCAGGAGCTGACTATGCACGCTTGGGTGC
ACACCGAGGAGAGCCGGCGGCGTACGCTCCAGCGTTCGGACATTGCCCAG
GCCATAGCCAACTACGACCAGTTCGACTTCCTCATCGACATTGTGCCGCG
CGAAGAGATCAAACCGTCGTCGGCGCAAAAGACCAAGGATGGCAGTACAT
CCAGTTCGAGCGGAATGGCGGGCGCAGCCAGCAGTGCCGCCTCCACCTCA
ACACAGCCACCTCCAATGCGGCCGCCTCCGTGGCCGGCAATGCTACCGCC
ACGGGCAACTTTGTAGCCAGTGGTTCCACCGTACCTGCGACCACCGCTG
MXO01318.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3075-PA | 1806 | CG3075-RA | 430..791 | 438..799 | 1810 | 100 | Plus |
| CG3075-PA | 1806 | CG3075-RA | 1..323 | 9..331 | 1590 | 99.6 | Plus |
| CG3075-PA | 1806 | CG3075-RA | 792..892 | 799..899 | 480 | 99 | Plus |
| CG3075-PA | 1806 | CG3075-RA | 330..375 | 338..383 | 230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nf-YC-RA | 2522 | CG3075-RA | 193..1085 | 8..899 | 3953 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6819677..6820528 | 899..49 | 3738 | 96.1 | Minus |
| X | 23542271 | X | 6820683..6820727 | 52..8 | 210 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:22:27 has no hits.
MXO01318.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:16 Download gff for
MXO01318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3075-PA | 1..375 | 9..383 | 98 | == | Plus |
| CG3075-PA | 430..892 | 438..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:30:01 Download gff for
MXO01318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nf-YC-RA | 187..568 | 1..383 | 97 | == | Plus |
| Nf-YC-RA | 623..1085 | 438..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:38 Download gff for
MXO01318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nf-YC-RA | 187..568 | 1..383 | 97 | == | Plus |
| Nf-YC-RA | 623..1085 | 438..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:38 Download gff for
MXO01318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6819677..6820139 | 438..899 | 99 | == | Minus |
| X | 6820194..6820524 | 53..383 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:30:01 Download gff for
MXO01318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6713710..6714172 | 438..899 | 99 | == | Minus |
| arm_X | 6714227..6714557 | 53..383 | 98 | <- | Minus |
