MXO01319.3prime Sequence
860 bp (775 high quality bases) assembled on 2007-03-15
> MXO01319.3prime
ATGGTCTAGAAAGCTTGCTTCCGTCGAGGAGCGGGCACGTTTCGGGTTCG
AGTACAGCGAAATTAGCATGGACGGGTCTGGCTGGCTCGTGTCCAAACGC
CTCCTGCGCTGCGGCGGCAGGCGTTCCGTAAAACGTTTCGGTATACCGGC
TTCCAGTAGCGTTTTTCGGTCGTACAAATCAAGATTGTCGTTATAGTATG
TGATGGCGTCCCAGCACATTTCGCTCAGTTTGGGCACTGTCATCCACATC
TTATACAGATCGTTGCGGCGGCGCATCTCCTTGTCAATGTACTCGATGCC
TCCGAATACGTACATGCATCCATTATCGGAGTGGGCCGCCGAGTGGAAGT
AAAGGGGGCGGGGCAGGATGGCGGTCTCGTTGCCCCCCCCCCGCTTAGTG
CGCAGATTAAGCTTCCAAATGACCGAAAAATATGTGGAGAAGTCGCCTTG
CAGACCGCCCGTGATGAAAGCCTCGATGTCCCCAGTGGAGGACTGGTGCT
GCACACAGGAAAAGCACTTGCGCGGCTTTGGATAGCCTCTGTTGCCGTCG
TCCGCATCAGCTGCACGCTGATCGGGATACGTTTCAAAGTAATCCCAGCA
GTTCGCCTCCAGGTTGTAAGCCGGAATGCGCTGCAAATCGTATACAGAGT
GCGATGTGCCGCCGCCCAGCACAAAGATGTGCTTGCCATCATNAACGACC
TCGTGACGGTAGCGCCCTTCTGGGTCGTCTCGCATCTCCGGACGACTTAT
GTACACATTCTCCCATATACCGGTGCGCAAATCCAAACGATAAACATCAC
AAGTGTAATCAAATCCCGTCGTTCCGCCGATTGTGTAGAGGAAGTGCTTG
TGGATCACTA
MXO01319.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5186-PB | 1884 | slim-RB | 1040..1507 | 860..393 | 2271 | 99.3 | Minus |
| CG5186-PA | 1830 | slim-RA | 986..1453 | 860..393 | 2271 | 99.3 | Minus |
| CG5186-PB | 1884 | slim-RB | 1521..1878 | 379..22 | 1790 | 100 | Minus |
| CG5186-PA | 1830 | slim-RA | 1467..1824 | 379..22 | 1790 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slim-RC | 2510 | CG5186-RC | 1495..2333 | 860..22 | 4034 | 98.7 | Minus |
| slim-RA | 3081 | CG5186-RA | 1495..2333 | 860..22 | 4034 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18443800..18444213 | 860..447 | 2059 | 99.8 | Minus |
| 2R | 25286936 | 2R | 18444348..18444778 | 452..22 | 1990 | 97.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:54:45 has no hits.
MXO01319.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:17 Download gff for
MXO01319.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5186-PA | 987..1830 | 18..859 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:27 Download gff for
MXO01319.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slim-RA | 1496..2341 | 13..859 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:53 Download gff for
MXO01319.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slim-RA | 1496..2341 | 13..859 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:53 Download gff for
MXO01319.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18443801..18444212 | 448..859 | 99 | -> | Minus |
| 2R | 18444353..18444786 | 13..447 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:27 Download gff for
MXO01319.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14331306..14331717 | 448..859 | 99 | -> | Minus |
| arm_2R | 14331858..14332291 | 13..447 | 96 | | Minus |
MXO01319.5prime Sequence
872 bp (772 high quality bases) assembled on 2007-03-15
> MXO01319.5prime
CAGTCGACATGAACATACTAAATCCCCGCAAATTCAAGTGTATCGTATTT
GACCAACTGCGTCACACTTGGACATTTCTTTTGTTTATCTGCGACTTCCT
GCCGAAGATTTACAGGACGCCTCGTATAACTGCCCACCAGGAGCAGCTGG
CCAACCATAATAATAACAACAACAATAATAACGATCTGATCATGGAACAG
GACATGCCAGAGGAGGAAGTGGGTCAGCCAGAGGAGGCTCTGCCGCAGCA
GGACAACGGTGAGGTTGTCGACCGTTTCAATGCCATTCAGGCTGCCGTGG
AGCTCATGGACGCAGCCAGCGATTTGGACTATTAAGAGGAGGAAGAAGAC
GACGACGTGGACGTGGATGTGGACTACGGCTATATTTCCCCCCCCCCCCA
ATTCGAAGAGATGTACTCAAAAAAAAAGAAGAGTTCCAGCGATGAGCTGG
ACGAGGGTACAGAGCTATCTAAGAGTGTCTTGAATGTCTTCCTCTCGTCG
GATAAACAGCAATCTCAAATGGCCGGACAGATTCCCATGTACGCCTTCCA
GCCGTTGCGTCTCGTCAAGTGCCAGTACAGGGATAAACATATACCCGGTG
GATTCCCTCTGGCACGCAGTGGCCACCGGATCATTGCCTCCAATTCGCAT
CTGTATTCCCTGGGTGGCTACAATCCGCGGAGCGCCATGTCTGCATCACG
CCACGGCCGATGTCTTCTCTTCCAGGAGCTGTGGAGCTACAACTTTGCCA
CGAGAACCTGGAGGCTGGAGCTGAATGCGGGCAATGCCGCCAATATGCCC
GTGGAGCTGGCCTCCAATGCATTGACCATTCACAATAACGTGTTGATTTC
TCATGGCGGCACTGGTTATCCA
MXO01319.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5186-PB | 1884 | slim-RB | 478..918 | 432..872 | 2205 | 100 | Plus |
| CG5186-PA | 1830 | slim-RA | 424..864 | 432..872 | 2205 | 100 | Plus |
| CG5186-PB | 1884 | slim-RB | 55..375 | 9..329 | 1530 | 99 | Plus |
| CG5186-PA | 1830 | slim-RA | 1..321 | 9..329 | 1530 | 99 | Plus |
| CG5186-PB | 1884 | slim-RB | 380..426 | 334..380 | 235 | 100 | Plus |
| CG5186-PA | 1830 | slim-RA | 326..372 | 334..380 | 235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slim-RC | 2510 | CG5186-RC | 510..1373 | 9..872 | 3885 | 96.6 | Plus |
| slim-RA | 3081 | CG5186-RA | 510..1373 | 9..872 | 3885 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18441474..18442313 | 9..848 | 3765 | 96.5 | Plus |
Blast to na_te.dros performed 2014-11-28 18:40:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 22..50 | 153..181 | 118 | 89.7 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7060..7088 | 153..181 | 118 | 89.7 | Plus |
| Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 2873..2928 | 158..211 | 112 | 71.4 | Plus |
| Stalker | 7256 | Stalker STALKER 7256bp | 2767..2822 | 158..211 | 112 | 71.4 | Plus |
MXO01319.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:17 Download gff for
MXO01319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5186-PA | 1..863 | 9..871 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:23 Download gff for
MXO01319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slim-RA | 503..1372 | 1..871 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:19 Download gff for
MXO01319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slim-RA | 503..1372 | 1..871 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:19 Download gff for
MXO01319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18441467..18442313 | 1..848 | 96 | -> | Plus |
| 2R | 18443655..18443677 | 849..871 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:23 Download gff for
MXO01319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14328972..14329818 | 1..848 | 96 | -> | Plus |
| arm_2R | 14331160..14331182 | 849..871 | 100 | | Plus |
