MXO01320.3prime Sequence
831 bp (802 high quality bases) assembled on 2007-03-15
> MXO01320.3prime
ATGGTCTAGAAAGCTTGCACTTTGCTTGCTCGTGGGTGCTGTCAGTGTCA
TGGCTGTCGTGGGTGTCGAAGGTGCTCCTGTGGCCAGCTCATTCCCGCCC
AGATCGCTGCCCTGCGACTTCAACTGCAGCTCCGGCGGCTGTGGCTGCTG
CTGCTGCGGCGGCTTCTCGCTGATCACGGACGTGGAGTGCTGCGTCAGGA
TGTCCGCCGGAATGAGGCCCTCCTTCACGCGCTTCTTCTGCTTCATGCGG
CGGTTCTGGAACCAGATTTTGACCTGCGTTTCATTAAGCTGCAACGTATT
GGCGATTTCAATGCGGCGCGCCCGCGTCAAGTAGCGATTGAAGTGGAACT
CTTTTTCCAGCTCGGTCAGCTGCTTGTTGGTGATCTCCCCCCGGCCGGAG
TTGTTGGTGTTGCTGGAGAGGCTGCAGCTGCTCAGTCCGGATCCGCTGCC
CAGACCCACGCCCATGCCGTTGGGATGGGCACTTCCCGCCGCCGCCGCAC
TGTTCGCCATTATCAGGGAGTTCTGCACGGAAAGGACGCCTCCGATCCCG
GGGGATCCGTTGCCCCCAACGCCCACGGGACCGTTCCCGACGCCGCTGCC
CCCGCCTCCTCCACCGCGGCACATGTCCAGCTGTCCATTCATCTGGTAGT
CGTGCATGCTGGCGATTCCACTGGCAGGTAGTTTCGGTGCTTGAGGCTTT
GGAACATTCCTCTTGAGTTGCATCCACTTGTANGTGGGGATGCTGCTGGA
ATGATTTGGCGACTTTGATTGCGTGCTGGCAGGATGTGCTCCATTCGAGG
CGGAGGTGGAGGAGGAAGTGGAGCTACCCGG
MXO01320.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1264-PA | 1890 | lab-RA | 1075..1515 | 831..391 | 2186 | 99.7 | Minus |
| CG1264-PA | 1890 | lab-RA | 1523..1887 | 383..19 | 1825 | 100 | Minus |
| CG10604-PA | 864 | bsh-RA | 534..560 | 265..239 | 135 | 100 | Minus |
| CG10604-PB | 1290 | bsh-RB | 960..986 | 265..239 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lab-RA | 2775 | CG1264-RA | 1319..2131 | 831..19 | 3979 | 99.3 | Minus |
| lab-RB | 1586 | CG1264-RB | 272..942 | 689..19 | 3280 | 99.3 | Minus |
| ftz-RA | 1774 | CG2047-RA | 872..1003 | 363..232 | 210 | 79.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6662569..6662988 | 272..691 | 2025 | 98.8 | Plus |
| 3R | 32079331 | 3R | 6662071..6662329 | 19..277 | 1295 | 100 | Plus |
| 3R | 32079331 | 3R | 6677131..6677272 | 690..831 | 699 | 99.3 | Plus |
| 3R | 32079331 | 3R | 6865342..6865473 | 363..232 | 210 | 77.3 | Minus |
Blast to na_te.dros performed 2014-11-28 19:55:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2384 | 174..124 | 117 | 72.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2633..2674 | 157..116 | 111 | 73.8 | Minus |
MXO01320.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:18 Download gff for
MXO01320.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1264-PA | 1075..1890 | 16..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:33 Download gff for
MXO01320.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lab-RA | 1319..2144 | 8..831 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:04 Download gff for
MXO01320.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lab-RA | 1319..2144 | 8..831 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:04 Download gff for
MXO01320.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6662065..6662325 | 14..273 | 98 | <- | Plus |
| 3R | 6662571..6662986 | 274..689 | 98 | <- | Plus |
| 3R | 6677131..6677272 | 690..831 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:33 Download gff for
MXO01320.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2487787..2488047 | 14..273 | 98 | <- | Plus |
| arm_3R | 2488293..2488708 | 274..689 | 98 | <- | Plus |
| arm_3R | 2502853..2502994 | 690..831 | 99 | | Plus |
MXO01320.5prime Sequence
891 bp (703 high quality bases) assembled on 2007-03-15
> MXO01320.5prime
CAGTCGACATGATGGACGTAAGCAGCACGTACGGCAACCACCCGCACCAC
CACCATCCACATGCCAATGCCTACGACGGCTACAGCACCACCACCGCGTC
GGCGGCCAACGCCAGCAGCTACTTTGCTCCGCAGCAACACCAGCCCCACC
TGCAGCTGCAGCAGCAGCAACAGCATCAGCATTTGCAGCAGCCCCAGCAG
CACCTCACCTACAATGGCTACGAGAGCAGCTCCCCAGGCAACTACTATCC
GCAGCAGCAGGCGCAGCTGACACCACCGCCCACCAGCAGCCACCAGGTGG
TGCAGCAGCACCAGCAACAGCAGCAGGCGCAGCAGCAACAGCTCTATCCG
CATTCGCATCTCTTTAGTCCCAGTGCGGCGGAGTATGGCATCTCCCCCCC
CCCCCACCACGGGAAATCCGGGCACGCCAATAAATCCTAGTAGCCACTCT
CCTGCGGACTCCTACTACGAAAGTGACTCGGTGCACTCGTACTACGCTAC
CGCCGCAGTGGCCACAGTTGCTCCACCCAGCAATAGCTCACCTATTACCG
CCGCCAATGCAAGTGCCACCAGCAACACACAACAACAGCAGCAACAGGCA
GCAATCATCAGCTCCGAGAACGGGATGATGTACACCAACCTGGACTGCAT
GTATCCCACGGCCCAGGCTCAGGCTCCGGTTCACGGATATGCCGGCCAGA
TCGAGGAGAAATACGCCGCCGTCCTGCACGCCAGCTATGCACCCGGAATG
GTGCTGGAGGATCAGGATCCAATGATGCAGCAGGCCACGCAGTCGCAGAT
GTGGCACCACCAGCAACATCTGGCAGGCAGCTATGCCCTAGATGCCATGG
ACTCGCTAGGAATGCACGCCCACATGCATCACGGCCTGCCC
MXO01320.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1264-PA | 1890 | lab-RA | 425..882 | 434..891 | 2265 | 99.7 | Plus |
| CG1264-PA | 1890 | lab-RA | 1..384 | 9..392 | 1895 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lab-RA | 2775 | CG1264-RA | 245..1126 | 9..891 | 4180 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6677465..6678346 | 891..9 | 4155 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:31:29 has no hits.
MXO01320.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:18 Download gff for
MXO01320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1264-PA | 1..882 | 9..891 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:07 Download gff for
MXO01320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lab-RA | 245..1126 | 9..891 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:25 Download gff for
MXO01320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lab-RA | 245..1126 | 9..891 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:25 Download gff for
MXO01320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6677465..6678346 | 9..891 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:07 Download gff for
MXO01320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2503187..2504068 | 9..891 | 98 | | Minus |
