MXO01321.3prime Sequence
883 bp (796 high quality bases) assembled on 2007-03-15
> MXO01321.3prime
ATGGTCTAGAAAGCTTGCATTTTGCGGATCGGCGATTCTTAAGGTTGCGT
TCCAGTTTGTGATGAGGCTTGCCTTCGTTCTTTCCTGTCTTCTGAGTGAT
TCTTTGAGCATCCCGACTGCGAGTTTGGCGCACGGATTGCTGGGCATCCT
TGGGAGGATTGGTTTTACGCTGCTTTGGAGGCGGCGGCGTGAAGGATTCG
TCGCTATCGTCTAGGTGGTCCTCATAGAGAGCATCGTCTTCTAAGTATTC
CGTCACGAATTCTTCCTGCTTCACATTGTCCATGTCTTCAAAATCGTCAA
GATGTTCCTCCTTCTCATCGACGCCGCCTTCTCCTTCGCCGTCGTCTTCG
AACTCGTTCTGGTACGGCTCCATTTCCACCACATGATCCTCCTCGATGTG
GCGCTGCAGGCATTTCTGCGTCAAGAAGATGTGGTCACAGAACTCGCAGG
CATGGCGCTCGCTCTGCTTGTGCTGGTCCATGTGGCTCTCGACACTGTCG
ATATCTTCGATCTGCTTGCGACACATGGGACATTTCAGGCTGGCGGTGGC
ATGAATGAGCGCATGATCCAGTAGGTCGTTATAGTTGCTGTACGACACCT
TGCACTCACTGCACACGAACGAGGCGTCGGAAGTCTGCGTGTGCGTGCGC
AGGTGGCGCGAGAGATGATGCGACAGCATGTAGGACTTGTGGCAGTACTT
GCAGGGATAGGCTCTCTTCCCGGCGTGGGCAACCAGGTGGCGGGCCAGCT
TGGAAGCGGTGGAAAAGCTTCTCTCGCAATGCTGACAGGGGAAGGGAAGA
TTGGTGGAGTGGACTGTCTCATGACGCTCCAATCCCTGCTTGAAGGCAAA
CGACTTGGTGCAGACACCGCATTGGAACGGACG
MXO01321.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3941-PA | 2052 | pita-RA | 1186..2050 | 883..19 | 4300 | 99.8 | Minus |
| CG3941-PB | 1872 | pita-RB | 1006..1870 | 883..19 | 4300 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pita-RB | 2529 | CG3941-RB | 1539..2403 | 883..19 | 4310 | 99.9 | Minus |
| pita-RA | 2472 | CG3941-RA | 1482..2346 | 883..19 | 4310 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23549093..23549893 | 19..819 | 3990 | 99.9 | Plus |
| 2R | 25286936 | 2R | 23549948..23550013 | 818..883 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:40:07 has no hits.
MXO01321.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:19 Download gff for
MXO01321.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3941-PB | 1006..1872 | 15..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:24 Download gff for
MXO01321.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pita-RA | 1482..2348 | 15..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:21 Download gff for
MXO01321.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pita-RA | 1482..2348 | 15..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:21 Download gff for
MXO01321.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23549091..23549891 | 15..817 | 99 | <- | Plus |
| 2R | 23549948..23550013 | 818..883 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:24 Download gff for
MXO01321.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19436614..19437414 | 15..817 | 99 | <- | Plus |
| arm_2R | 19437471..19437536 | 818..883 | 100 | | Plus |
MXO01321.5prime Sequence
841 bp (687 high quality bases) assembled on 2007-03-15
> MXO01321.5prime
CAGTCGACATGGCCGCGAAACTGGAGGTGCGCGAGGCCATGCTGACCGAG
AAGAGGGTCTGCCGCTTCTGTCTGACCGAGCAGAAGCTGGCCTCGATTTT
CGAGGAGAATCCGCGGGTGAAAACAACCGCCAATCTGCCGCTGCAGATTA
TGGCCATCACGGCGATCGAGGTCTACGCCGGCGACGGAATGCCGGGGCAC
ATCTGTCTGGAGTGCCGCCTCCTCTTCGAGCACTGCTACCGCTTCAAGCA
GATGTGCAAGCGGGCGGAGACCCTCCTGCGCCAGTATCCGCTCACGGGTA
ACTGGCCATCGCCGCTGGAGAAGCCCCGTGCGCCCATGACGATGGTGGCT
TCCAAGAAGTTGTTGGTCGTGCCAGCAAAGACAGCCTATCCACCCCCCCC
GCCCAAAAAGCTGCTGAACACAATGGCCAAATCCAGTAGTCAGGTGATCA
TCGAGGACGTCCAGGTGCTGGAGAGCGCCATGGTGACCCCCAGGACGGTA
GCCGGTTCCTCTCCAGTGCCACGTCGTTCGCACGCCTATGAGCTGAAGGT
GGATAACAACCAGGAGCTGTCCATGGACGATGTGCAGAGCATGCTGGAGG
ATATGGCCAGTGAGCTAGAGAAGGAGTTCCCCGATATCCCCCAGAAGGCA
TCACCCGTCAAGCCGAAGGTGCTGAACAAGTCCTCGATTAGGATCTTGAA
CAAGGGACCCGCCGCTCCGGTGGAACCGCGCCTGGCCACACCCAAAGTCA
AGCGAGATGATAGTGGCAATGTGGCCATAGTGACAGAGGTTCTGGACTCG
GATCTGCCATTGGACGATCAAGATGATCCGACCAAGAACGC
MXO01321.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3941-PA | 2052 | pita-RA | 392..833 | 400..841 | 2210 | 100 | Plus |
| CG3941-PB | 1872 | pita-RB | 212..653 | 400..841 | 2210 | 100 | Plus |
| CG3941-PA | 2052 | pita-RA | 1..378 | 9..386 | 1890 | 100 | Plus |
| CG3941-PB | 1872 | pita-RB | 1..198 | 189..386 | 990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pita-RA | 2472 | CG3941-RA | 297..1129 | 9..841 | 4045 | 99 | Plus |
| pita-RB | 2529 | CG3941-RB | 514..1186 | 169..841 | 3245 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23550366..23551038 | 841..169 | 3245 | 98.8 | Minus |
| 2R | 25286936 | 2R | 23554253..23554416 | 172..9 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:12:25 has no hits.
MXO01321.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:19 Download gff for
MXO01321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3941-PB | 1..653 | 189..841 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:39 Download gff for
MXO01321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pita-RA | 288..1129 | 1..841 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:20 Download gff for
MXO01321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pita-RA | 288..1129 | 1..841 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:20 Download gff for
MXO01321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23550366..23551036 | 171..841 | 98 | <- | Minus |
| 2R | 23554255..23554425 | 1..170 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:39 Download gff for
MXO01321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19437889..19438559 | 171..841 | 98 | <- | Minus |
| arm_2R | 19441778..19441948 | 1..170 | 97 | | Minus |
