Clone MXO01322 Report

Search the DGRC for MXO01322

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:22
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptpr-set7-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01322.3prime Sequence

881 bp (813 high quality bases) assembled on 2007-03-15

> MXO01322.3prime
ATGGTCTAGAAAGCTTGCGAACGCCAACCAAGGATGGTGCAATAGTGACT
CCTTCGATCGGTCCCCGTAGTCATAGGTCAGTTCCTCGCCCGGCTCGATG
TCGTCCTTGGCCAGGAGTACGAGATGCGGCCGCTGTTTGATAAGTACTAC
TTTGGTCATTAGGTTACCAGCCCGCGAGTGATTGATGAGGCGCCCCAGCT
TGCCGGTGTCAACGGTTGCATCGATGCAGTACTGCTGGGACTTGTGCTTG
AAGTAGTACATATAGCACCCAGCATTCTCGTCCAACGCATAGCGTTTCTC
CCGTTCCGCGGCTTCGCCTATAGATATGAGATCTCCCACATACTCAACCA
CAAATTCGTTGCGTTTAAAGGGCCGATCGGTGATTACCCCTCTTCCCTTG
CCCATAAAGTGGCGTACTTGGAGACCATCGCAGCGCTCTTCCAGCACTGC
TTGCTCCAAGCCTCGCATCCATTCCTCCTTGACGGCCGTCTTAGTCTTGC
GCACACTCCTTCGCACCGGGAAGAAGTCCGTCATCTCACGATTGCCGTTG
GTGGCAGCCAAGGGCAGCGGCGGTTGTCCCTTCGTTGGCCCCTTGCTTTT
GGTCTTTGATTTCACGGGCGCAGGCTTGAGCATCGTTTTCATGCCTGCTT
TGTTGCTGTTCGCTGTGGCTGGTGCTTTGTTCTGGTTTTCACGCTCCTCG
GCAGCCTTGATCAGGGCTCGAACGTCGTCCTCGTCATCTCCTTCATCATC
GTCGTCGTCTAGCACCACGACGATATCATCCTGCTGCTGCTGCTGCTGTT
GTGACGGTGGTTTCTGTAGCTGTGGCTGGTAAGGCGCTTGTGGCTTTGGC
TGGTTCAGTCTTCGACGCGACTTGCAGGCTG

MXO01322.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3307-PC 2076 pr-set7-RC 1211..2069 881..23 4220 99.6 Minus
CG3307-PA 2076 pr-set7-RA 1211..2069 881..23 4220 99.6 Minus
CG3307-PB 2076 pr-set7-RB 1211..2069 881..23 4220 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
pr-set7-RD 3175 CG3307-RD 1376..2238 881..19 4255 99.5 Minus
pr-set7-RB 4183 CG3307-RB 1582..2444 881..19 4255 99.5 Minus
pr-set7-RA 3311 CG3307-RA 1512..2374 881..19 4255 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14317893..14318755 881..19 4255 99.5 Minus
Blast to na_te.dros performed 2014-11-28 19:53:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmau\mariner 1286 Dmau\mariner DMMAR 1286bp Derived from M14653 (Rel. 63, Last updated, Version 2). 368..434 690..624 119 64.2 Minus

MXO01322.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:19 Download gff for MXO01322.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3307-PB 1211..2076 16..881 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:29 Download gff for MXO01322.3prime
Subject Subject Range Query Range Percent Splice Strand
pr-set7-RA 1507..2369 19..881 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:49 Download gff for MXO01322.3prime
Subject Subject Range Query Range Percent Splice Strand
pr-set7-RA 1512..2374 19..881 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:49 Download gff for MXO01322.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14317893..14318755 19..881 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:29 Download gff for MXO01322.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10143615..10144477 19..881 99   Minus

MXO01322.5prime Sequence

889 bp (657 high quality bases) assembled on 2007-03-15

> MXO01322.5prime
CAGTCGACATGATAATGGTGCGAAGACGACAACGGCCCGCCAAGGAAGCC
GCATCCTCATCCTCTGGTGGAGCTTCCTCGGGATCGGGAATTCCTGTTGA
CCAGGCACTGCCACTGAATGTGGCGGGAAATCTGCTGGAGGATCAGTATT
TTGCCAGCCCCAAGCGGAAAGACTGCCGTTTGATGAAGGTCACTCAAAAT
GGCCAACTGCCGGAAGCCACAATGATGGCACACAACAAAGACAACAAAGC
GGGTCGCACAATAGGAGTTCCCTTGGCCACGCGCTCACAAACTCGCACCA
TTGAGAACTTCTTCAAAGCCAATGCTGCCGCTAAGGATTCCCAAAAGACA
ATACACACAGAGGAGCAGTTGAATCTAGGAAATCAGGAACTGAAACTGCA
CCATGAGGAGCTAAATGGACAGATAAAACTAGATGACGAGGTGCTAAAGC
TGGCAGACAAGCAGATAAATGAAAACCTTCCCTTTGCCGACGAAGTAGAT
GCCAAGGCAGAACAAAAGCTTATGGATGAGGAACTGCAGCAGGTGGTGGA
GGAACTTCTGTTCGATGGCAGTTCCAGAGCGTCCTCCAATTCGCCCTTTT
ATCAGCATGATATGGATGTCATGCAGGAGATCCAGCAGACTCCAGAAATT
CCACACATCAAAAAGGTCACAGAGCCGCTCGAGGGACTGGGCTCTCTGGC
CGACTTCCAGACACATCGCTCTGCGCTGAGGGACAGCCACAGTTCCACGC
ACAGCAGCAGCACCGACAACATCTTCCTGCAGGAGCCGGTACTGACCCTG
GACATTGATCGCACGCCCACCAAAGCCTCCAGCATAAAGATCAATCGGAG
CTTCGAACTGCCCGGAGCCGTATTCTCATCACCTCCGTC

MXO01322.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3307-PC 2076 pr-set7-RC 1..881 9..889 4330 99.6 Plus
CG3307-PA 2076 pr-set7-RA 1..881 9..889 4330 99.6 Plus
CG3307-PB 2076 pr-set7-RB 1..881 9..889 4330 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
pr-set7-RD 3175 CG3307-RD 166..1046 9..889 4360 99.7 Plus
pr-set7-RB 4183 CG3307-RB 372..1252 9..889 4360 99.7 Plus
pr-set7-RA 3311 CG3307-RA 302..1182 9..889 4360 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14316937..14317563 263..889 3090 99.5 Plus
3R 32079331 3R 14316612..14316868 9..265 1285 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:07:43 has no hits.

MXO01322.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:20 Download gff for MXO01322.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3307-PB 1..881 9..889 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:29 Download gff for MXO01322.5prime
Subject Subject Range Query Range Percent Splice Strand
pr-set7-RA 289..1177 1..889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:37 Download gff for MXO01322.5prime
Subject Subject Range Query Range Percent Splice Strand
pr-set7-RA 294..1182 1..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:37 Download gff for MXO01322.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14316604..14316867 1..264 98 -> Plus
3R 14316939..14317563 265..889 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:29 Download gff for MXO01322.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10142326..10142589 1..264 98 -> Plus
arm_3R 10142661..10143285 265..889 99   Plus