MXO01322.3prime Sequence
881 bp (813 high quality bases) assembled on 2007-03-15
> MXO01322.3prime
ATGGTCTAGAAAGCTTGCGAACGCCAACCAAGGATGGTGCAATAGTGACT
CCTTCGATCGGTCCCCGTAGTCATAGGTCAGTTCCTCGCCCGGCTCGATG
TCGTCCTTGGCCAGGAGTACGAGATGCGGCCGCTGTTTGATAAGTACTAC
TTTGGTCATTAGGTTACCAGCCCGCGAGTGATTGATGAGGCGCCCCAGCT
TGCCGGTGTCAACGGTTGCATCGATGCAGTACTGCTGGGACTTGTGCTTG
AAGTAGTACATATAGCACCCAGCATTCTCGTCCAACGCATAGCGTTTCTC
CCGTTCCGCGGCTTCGCCTATAGATATGAGATCTCCCACATACTCAACCA
CAAATTCGTTGCGTTTAAAGGGCCGATCGGTGATTACCCCTCTTCCCTTG
CCCATAAAGTGGCGTACTTGGAGACCATCGCAGCGCTCTTCCAGCACTGC
TTGCTCCAAGCCTCGCATCCATTCCTCCTTGACGGCCGTCTTAGTCTTGC
GCACACTCCTTCGCACCGGGAAGAAGTCCGTCATCTCACGATTGCCGTTG
GTGGCAGCCAAGGGCAGCGGCGGTTGTCCCTTCGTTGGCCCCTTGCTTTT
GGTCTTTGATTTCACGGGCGCAGGCTTGAGCATCGTTTTCATGCCTGCTT
TGTTGCTGTTCGCTGTGGCTGGTGCTTTGTTCTGGTTTTCACGCTCCTCG
GCAGCCTTGATCAGGGCTCGAACGTCGTCCTCGTCATCTCCTTCATCATC
GTCGTCGTCTAGCACCACGACGATATCATCCTGCTGCTGCTGCTGCTGTT
GTGACGGTGGTTTCTGTAGCTGTGGCTGGTAAGGCGCTTGTGGCTTTGGC
TGGTTCAGTCTTCGACGCGACTTGCAGGCTG
MXO01322.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3307-PC | 2076 | pr-set7-RC | 1211..2069 | 881..23 | 4220 | 99.6 | Minus |
CG3307-PA | 2076 | pr-set7-RA | 1211..2069 | 881..23 | 4220 | 99.6 | Minus |
CG3307-PB | 2076 | pr-set7-RB | 1211..2069 | 881..23 | 4220 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pr-set7-RD | 3175 | CG3307-RD | 1376..2238 | 881..19 | 4255 | 99.5 | Minus |
pr-set7-RB | 4183 | CG3307-RB | 1582..2444 | 881..19 | 4255 | 99.5 | Minus |
pr-set7-RA | 3311 | CG3307-RA | 1512..2374 | 881..19 | 4255 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14317893..14318755 | 881..19 | 4255 | 99.5 | Minus |
Blast to na_te.dros performed 2014-11-28 19:53:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmau\mariner | 1286 | Dmau\mariner DMMAR 1286bp Derived from M14653 (Rel. 63, Last updated, Version 2). | 368..434 | 690..624 | 119 | 64.2 | Minus |
MXO01322.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:19 Download gff for
MXO01322.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3307-PB | 1211..2076 | 16..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:29 Download gff for
MXO01322.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pr-set7-RA | 1507..2369 | 19..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:49 Download gff for
MXO01322.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pr-set7-RA | 1512..2374 | 19..881 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:49 Download gff for
MXO01322.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14317893..14318755 | 19..881 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:29 Download gff for
MXO01322.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10143615..10144477 | 19..881 | 99 | | Minus |
MXO01322.5prime Sequence
889 bp (657 high quality bases) assembled on 2007-03-15
> MXO01322.5prime
CAGTCGACATGATAATGGTGCGAAGACGACAACGGCCCGCCAAGGAAGCC
GCATCCTCATCCTCTGGTGGAGCTTCCTCGGGATCGGGAATTCCTGTTGA
CCAGGCACTGCCACTGAATGTGGCGGGAAATCTGCTGGAGGATCAGTATT
TTGCCAGCCCCAAGCGGAAAGACTGCCGTTTGATGAAGGTCACTCAAAAT
GGCCAACTGCCGGAAGCCACAATGATGGCACACAACAAAGACAACAAAGC
GGGTCGCACAATAGGAGTTCCCTTGGCCACGCGCTCACAAACTCGCACCA
TTGAGAACTTCTTCAAAGCCAATGCTGCCGCTAAGGATTCCCAAAAGACA
ATACACACAGAGGAGCAGTTGAATCTAGGAAATCAGGAACTGAAACTGCA
CCATGAGGAGCTAAATGGACAGATAAAACTAGATGACGAGGTGCTAAAGC
TGGCAGACAAGCAGATAAATGAAAACCTTCCCTTTGCCGACGAAGTAGAT
GCCAAGGCAGAACAAAAGCTTATGGATGAGGAACTGCAGCAGGTGGTGGA
GGAACTTCTGTTCGATGGCAGTTCCAGAGCGTCCTCCAATTCGCCCTTTT
ATCAGCATGATATGGATGTCATGCAGGAGATCCAGCAGACTCCAGAAATT
CCACACATCAAAAAGGTCACAGAGCCGCTCGAGGGACTGGGCTCTCTGGC
CGACTTCCAGACACATCGCTCTGCGCTGAGGGACAGCCACAGTTCCACGC
ACAGCAGCAGCACCGACAACATCTTCCTGCAGGAGCCGGTACTGACCCTG
GACATTGATCGCACGCCCACCAAAGCCTCCAGCATAAAGATCAATCGGAG
CTTCGAACTGCCCGGAGCCGTATTCTCATCACCTCCGTC
MXO01322.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3307-PC | 2076 | pr-set7-RC | 1..881 | 9..889 | 4330 | 99.6 | Plus |
CG3307-PA | 2076 | pr-set7-RA | 1..881 | 9..889 | 4330 | 99.6 | Plus |
CG3307-PB | 2076 | pr-set7-RB | 1..881 | 9..889 | 4330 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pr-set7-RD | 3175 | CG3307-RD | 166..1046 | 9..889 | 4360 | 99.7 | Plus |
pr-set7-RB | 4183 | CG3307-RB | 372..1252 | 9..889 | 4360 | 99.7 | Plus |
pr-set7-RA | 3311 | CG3307-RA | 302..1182 | 9..889 | 4360 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14316937..14317563 | 263..889 | 3090 | 99.5 | Plus |
3R | 32079331 | 3R | 14316612..14316868 | 9..265 | 1285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:07:43 has no hits.
MXO01322.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:20 Download gff for
MXO01322.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3307-PB | 1..881 | 9..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:29 Download gff for
MXO01322.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pr-set7-RA | 289..1177 | 1..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:37 Download gff for
MXO01322.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pr-set7-RA | 294..1182 | 1..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:37 Download gff for
MXO01322.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14316604..14316867 | 1..264 | 98 | -> | Plus |
3R | 14316939..14317563 | 265..889 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:29 Download gff for
MXO01322.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10142326..10142589 | 1..264 | 98 | -> | Plus |
arm_3R | 10142661..10143285 | 265..889 | 99 | | Plus |