MXO01323.3prime Sequence
862 bp (776 high quality bases) assembled on 2007-03-15
> MXO01323.3prime
ATGGTCTAGAAAGCTTGCGTACCCAGTCTCTGGCTCCTGTTTAAGTGTCA
TGCGACAGGGTTCCGTTCCATAACCAGCGGGTGCGGTTAGCATCTCGGGA
GCCCGGATCTTCAGTGGAGTTCGTCGCAGCAGCTCCTCGGCACTGCTACC
CTCGCTCCGGTTGTACTCGTTGAGCGTAATATCGGCAGGATTGCGCAGAC
CCAATCCGCCGCCCCCGCTGGACACTTCGACCGGCGAGGCGACTGCTCTT
TGGTAGGGATGCATCCTCTGGGGACTGTGCTGTGTTGGCAGCGGTCCGGA
CCGACTGCCATTGTAGTGCTTGACGGGCATGTCCAAGTAGGAGCTCTCCT
GTTGTTGCTGATGCGTCGCATGTTGCTGATGTTGATGTTGCGACTTGGGG
CTGTTGAGCGGAGGAGAGATCGAGGCTGGAGCAACGGATGCGGGTGCAGA
GGAGGAGGACGAGACGGCTGCAGCGGCTGCCGCTGCAGTGCTGGCCGCGT
AGGCCCGGAAGGAATCATCCGCACTGTTCGCCTCGATAAGAGCCTGAATG
TGCTGCACCTCCAGGTCCAGACTATGCGAGCCAGGACCACCGGACGTGGC
CAGCGAGTCCAGAGAGGAGTTAACTTGATTACCGCCCTCCATGTTGCCTG
TGTGGGTGGGACTCTGGTAGTCATTTGACTGATTGGGCGGCGATAGCGGC
AGAGGATTGTCGGCCAACTCTCCTCCCAACAACATTTCCTGCAGTAATGA
ATCAATGTGGGCCACTCCAAAGATCTTGGCAAACTGGATCTGCTCGATCA
TCTGCCAGGTAATAGACTGCAGAAACGGCAGGATGAGCAGAATCTCGCCA
AAGCGACCGCGC
MXO01323.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9310-PA | 2115 | Hnf4-RA | 1269..2108 | 862..23 | 4150 | 99.7 | Minus |
| CG9310-PB | 2199 | Hnf4-RB | 1353..2192 | 862..23 | 4150 | 99.7 | Minus |
| CG9310-PC | 2001 | Hnf4-RC | 1155..1994 | 862..23 | 4150 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hnf4-RE | 3876 | CG9310-RE | 2478..3321 | 862..19 | 4175 | 99.6 | Minus |
| Hnf4-RF | 2791 | CG9310-RF | 1420..2263 | 862..19 | 4175 | 99.6 | Minus |
| Hnf4-RD | 3600 | CG9310-RD | 2229..3072 | 862..19 | 4175 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8687889..8688550 | 63..724 | 3295 | 99.8 | Plus |
| 2L | 23513712 | 2L | 8688620..8688760 | 722..862 | 690 | 99.3 | Plus |
| 2L | 23513712 | 2L | 8687781..8687825 | 19..63 | 210 | 97.8 | Plus |
Blast to na_te.dros performed 2014-11-28 19:07:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2456 | 449..305 | 162 | 61.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6802 | 406..346 | 149 | 73.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6781 | 406..346 | 140 | 72.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6860 | 406..337 | 131 | 71.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6891 | 493..350 | 130 | 57.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2390 | 406..346 | 122 | 68.9 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1100..1152 | 406..350 | 122 | 75.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2598..2654 | 406..346 | 116 | 68.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6802 | 388..305 | 116 | 61.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2289..2425 | 497..350 | 112 | 57.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1532..1576 | 391..347 | 108 | 71.1 | Minus |
MXO01323.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:20 Download gff for
MXO01323.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9310-PC | 1155..2001 | 18..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:32 Download gff for
MXO01323.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hnf4-RB | 1368..2211 | 19..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:39 Download gff for
MXO01323.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hnf4-RD | 2229..3072 | 19..862 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:39 Download gff for
MXO01323.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8687781..8687824 | 19..62 | 97 | <- | Plus |
| 2L | 8687889..8688548 | 63..722 | 99 | <- | Plus |
| 2L | 8688621..8688760 | 723..862 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:32 Download gff for
MXO01323.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8687781..8687824 | 19..62 | 97 | <- | Plus |
| arm_2L | 8687889..8688548 | 63..722 | 99 | <- | Plus |
| arm_2L | 8688621..8688760 | 723..862 | 99 | | Plus |
MXO01323.5prime Sequence
844 bp (797 high quality bases) assembled on 2007-03-15
> MXO01323.5prime
CAGTCGACATGATGAAGCATCCGCAGGATCTGAGTGTCACGGATGACCAG
CAGTTAATGAAGGTGAACAAGGTGGAGAAGATGGAGCAGGAGTTGCACGA
CCCCGAATCGGAGAGCCACATAATGCACGCGGATGCCCTGGCCTCTGCCT
ATCCGGCTGCCTCGCAGCCCCACAGTCCGATCGGCCTCGCCCTCAGCCCC
AATGGCGGTGGGCTGGGACTGAGCAACAGTAGCAACCAGAGCAGCGAGAA
CTTTGCGCTCTGCAACGGAAACGGAAATGCGGGCAGCGCAGGAGGCGGAA
GTGCCAGCAGTGGCAGCAACAACAACAACAGCATGTTCTCACCCAACAAC
AACTTGAGCGGAAGCGGAAGTGGGACTAACAGCATTTTGCACCCCCTGCA
GCAGCAACAACAACAGCAATCACCGACGGTCTGCGCCATTTGTGGAGATC
GGGCGACGGGCAAACATTATGGAGCCTCCAGCTGCGACGGCTGCAAAGGA
TTCTTCAGGAGGAGTGTCAGGAAAAATCATCAGTACACTTGCAGATTTGC
GCGAAACTGCGTTGTGGACAAGGACAAACGGAATCAGTGCCGCTACTGCC
GGCTGAGGAAGTGCTTCAAGGCGGGCATGAAGAAGGAGGCGGTGCAAAAC
GAGCGGGATCGCATTAGCTGCCGCCGCACCTCCAATGACGACCCGGATCC
GGGCAATGGGCTGTCTGTGATTTCCTTGGTTAAGGCGGAGAATGAGTCGC
GTCAGTCGAAGGCAGGCGCTGCCATGGAGCCAAACATTAACGAGGACCTC
TCCAACAAGCAGTTCGCGAGCATCAACGATGTCTGCGAGTCGAT
MXO01323.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9310-PA | 2115 | Hnf4-RA | 389..836 | 397..844 | 2240 | 100 | Plus |
| CG9310-PB | 2199 | Hnf4-RB | 473..920 | 397..844 | 2240 | 100 | Plus |
| CG9310-PC | 2001 | Hnf4-RC | 275..722 | 397..844 | 2240 | 100 | Plus |
| CG9310-PA | 2115 | Hnf4-RA | 1..376 | 9..384 | 1880 | 100 | Plus |
| CG9310-PB | 2199 | Hnf4-RB | 180..460 | 104..384 | 1405 | 100 | Plus |
| CG9310-PC | 2001 | Hnf4-RC | 1..262 | 123..384 | 1310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hnf4-RE | 3876 | CG9310-RE | 1209..2045 | 8..844 | 4080 | 99.2 | Plus |
| Hnf4-RA | 3307 | CG9310-RA | 640..1476 | 8..844 | 4080 | 99.2 | Plus |
| Hnf4-RB | 2739 | CG9310-RB | 195..935 | 104..844 | 3600 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8689814..8690253 | 544..105 | 2095 | 98.4 | Minus |
| 2L | 23513712 | 2L | 8689326..8689629 | 844..541 | 1520 | 100 | Minus |
| 2L | 23513712 | 2L | 8704361..8704458 | 105..8 | 490 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:12:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6898 | 260..425 | 214 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2432 | 305..419 | 198 | 67.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2411 | 294..425 | 193 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2529 | 222..424 | 185 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..6923 | 222..414 | 185 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2478 | 260..417 | 181 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6834 | 305..418 | 176 | 68.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2810..2927 | 313..429 | 172 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6852 | 305..418 | 170 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6792..6930 | 222..360 | 162 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6871 | 289..419 | 160 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6828 | 313..415 | 150 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2767..2959 | 222..428 | 148 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2371..2702 | 222..574 | 142 | 54.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1151 | 260..353 | 139 | 64.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1058..1167 | 302..428 | 137 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2632..2844 | 222..436 | 125 | 55 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1506..1585 | 303..384 | 117 | 62.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 976..1089 | 310..418 | 116 | 59.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1085..1182 | 260..355 | 115 | 61.6 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7376..7455 | 255..338 | 112 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1554..1582 | 305..333 | 109 | 86.2 | Plus |
MXO01323.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:20 Download gff for
MXO01323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9310-PC | 1..722 | 123..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:43 Download gff for
MXO01323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hnf4-RA | 887..1723 | 8..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:37 Download gff for
MXO01323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hnf4-RA | 640..1476 | 8..844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:37 Download gff for
MXO01323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8689326..8689625 | 545..844 | 100 | <- | Minus |
| 2L | 8689814..8690252 | 106..544 | 98 | <- | Minus |
| 2L | 8704361..8704458 | 8..105 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:43 Download gff for
MXO01323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8689326..8689625 | 545..844 | 100 | <- | Minus |
| arm_2L | 8689814..8690252 | 106..544 | 98 | <- | Minus |
| arm_2L | 8704361..8704458 | 8..105 | 100 | | Minus |
