MXO01324.3prime Sequence
844 bp (746 high quality bases) assembled on 2007-03-15
> MXO01324.3prime
ATGGTCTAGAAAGCTTGCGTTCTTCGATGATCGCTCTGGCAGACCAGTGC
GCGTGATTACGCTGGGGGTCAGTTCAGTGTTGGAGCTGCGACTGCTTTCG
ATGGTGGGTACTGGCTGAACTATCTGACGGTTTATCGGCACCGTGCCGGG
CAGATGGGGCGATTGACTCTGTGGCGTTGATTGCTGACTGTAAGGAGAAT
GGCTCTCGCCGGTCACGTGATGACGGGCGGACATGTTGAGCGTTCCGTCG
GGGGTGGGCGGCGCCGTCGCATTCAGCGAAATGGACACCACCCGTTGCCC
ACCCGCTTGACCCGTCGTCGACATGTCGTGCAGCTCCGGACTGGAATTCT
GCTGGCTATTAAGCTGGCTATTCAGCATGCTATCTGGCACTTGGGAAGGA
TACAGCGGACTGTTGGCCATCAGGTTGACTCCCTGCGACATGCTCGGCAG
CGGTGCTCGGTGCATGGGTGCTCCTCCGTTGTTCTTAGGCTTCCGTTTGC
GCTTCTGGATGCCCTCCTTCTTCATCGACAGCGGTCGGTTCATGTTGTGC
AGCTTGTAGTACAGTCCGCAGGCATTGCACACCGGATTGCCCTCGTTGTT
GCGACGCCACAGGGTCGTCGAGTTGGTCTGACAGTTGGCGCAGGTGACCC
CGTTGCGCCGGTTGTTGGGGGCGGCGGCGGCCTTGGGCTTCGCCTGCCTC
TGGGTTATACGGGGCGCCATCCGCATAAAGGCCGGGCAATTGGGACAGAA
GTACTCGCTACCCTTCCGCAAGAACGGCCCATGGCAGTTCTCGCACTTTA
GCTCGTGGTTGGGCGACGATGTGGACGAGGCGGTCACCAGACTT
MXO01324.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10278-PA | 2241 | GATAe-RA | 1413..2234 | 844..23 | 4085 | 99.8 | Minus |
| CG3978-PB | 1467 | pnr-RB | 559..615 | 603..547 | 160 | 91.2 | Minus |
| CG3978-PA | 1623 | pnr-RA | 715..771 | 603..547 | 160 | 91.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GATAe-RC | 2879 | CG10278-RC | 1671..2496 | 844..19 | 4100 | 99.8 | Minus |
| GATAe-RB | 2983 | CG10278-RB | 1775..2600 | 844..19 | 4100 | 99.8 | Minus |
| GATAe-RA | 3086 | CG10278-RA | 1878..2703 | 844..19 | 4100 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16017806..16018207 | 844..443 | 2010 | 100 | Minus |
| 3R | 32079331 | 3R | 16018265..16018595 | 443..113 | 1640 | 99.7 | Minus |
| 3R | 32079331 | 3R | 16018657..16018750 | 112..19 | 455 | 98.9 | Minus |
| 3R | 32079331 | 3R | 16039336..16039457 | 603..482 | 265 | 81.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:22:36 has no hits.
MXO01324.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:21 Download gff for
MXO01324.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10278-PA | 1413..2241 | 15..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:30:07 Download gff for
MXO01324.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GATAe-RA | 1878..2713 | 8..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:43 Download gff for
MXO01324.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GATAe-RA | 1878..2713 | 8..844 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:43 Download gff for
MXO01324.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16018265..16018595 | 113..443 | 99 | -> | Minus |
| 3R | 16017806..16018206 | 444..844 | 100 | -> | Minus |
| 3R | 16018657..16018760 | 8..112 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:30:07 Download gff for
MXO01324.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11844379..11844482 | 8..112 | 95 | | Minus |
| arm_3R | 11843528..11843928 | 444..844 | 100 | -> | Minus |
| arm_3R | 11843987..11844317 | 113..443 | 99 | -> | Minus |
MXO01324.5prime Sequence
857 bp (741 high quality bases) assembled on 2007-03-15
> MXO01324.5prime
CAGTCGACATGGTCTGCAAAACTATCTCACCGAGTGTAAACATGCAGCTG
AAGATGGAACAGCAGACAACGCAGCAGCAGCAGCAGCAACAGCAACAGCA
ACAGCAACAGCAACAATTGCAACAGCAACAGCATCAGGCTCTAACCAAGC
AGCAGCTTCAACTGCTGGACAAAATCAAACTCGAGTCCAGCAACGGCGCC
GATCAGTTGGCCCAGCAGACGGCCAACAATCTGGATGAGCAGCAGGAGCA
GCAGCAACAACACCAACAGCAAGCCGCAACATCGGTGGGCGTGGTGGTGC
AGACGGGCCAAGCGGGCGTCAGCGAACCGGAGGAGCAGTACGTGGTGGTG
CCACGCAACCAGCGCCGTATTCTCACCACAGCCGGCACACTTGACCTAAA
CGAAGCTCGTGAAGGAGAACCGAGCACAAACGCCAGCAACGCGAGCTCAG
GATCTGCTTCGGATAGCCACATCGAGTACCAGCGCAGTGCACACCAATCT
CCCGGAGCCACTCACTACGTGCAGATGGCGCCACGCAACGCAGAGGTGAC
GGAACAGGTGGGAGCTGCTGCCGGAGCTCCGCCGGGCACCCTCTTCGCCT
ATCCTATTATCTGCAACGGTGACGATGTGGCCGCGATCAAAATCGAAACA
CTCGAGAAGGGAGAGGCGACGGGGGAGTCGCAACAACAGCAGCAGCAACT
GCAGCAACACCAGCATCAGCAGCAACAGCAATGTCCCACACCCAACGGAG
CTAGCTACGGCGAGACCATAGTGATCAGCAGCGAGGCGAAGGCACTGCAG
CATCACCACCAACAGCAGCAGCAGCACCAGCAGCAGCAGCATCAGCAGCA
ACACCAC
MXO01324.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10278-PA | 2241 | GATAe-RA | 1..849 | 9..857 | 4145 | 99.5 | Plus |
| CG7958-PA | 3408 | tna-RA | 541..581 | 801..841 | 180 | 97.5 | Plus |
| CG7958-PB | 3450 | tna-RB | 583..623 | 801..841 | 180 | 97.5 | Plus |
| CG4013-PA | 10815 | Smr-RA | 652..689 | 804..841 | 165 | 97.3 | Plus |
| CG4013-PB | 10815 | Smr-RB | 652..689 | 804..841 | 165 | 97.3 | Plus |
| CG4013-PC | 10815 | Smr-RC | 652..689 | 804..841 | 165 | 97.3 | Plus |
| CG17742-PA | 459 | CG17742-RA | 273..312 | 797..836 | 150 | 95 | Plus |
| CG32245-PB | 1518 | CG32245-RB | 328..360 | 804..836 | 140 | 96.9 | Plus |
| CG16711-PA | 4422 | CG16711-RA | 4039..4070 | 801..832 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GATAe-RA | 3086 | CG10278-RA | 466..1314 | 9..857 | 4185 | 99.5 | Plus |
| GATAe-RC | 2879 | CG10278-RC | 301..1107 | 51..857 | 3975 | 99.5 | Plus |
| GATAe-RB | 2983 | CG10278-RB | 408..1211 | 54..857 | 3960 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16016714..16017174 | 397..857 | 2275 | 99.6 | Plus |
| 3R | 32079331 | 3R | 16016226..16016565 | 52..391 | 1700 | 100 | Plus |
| 3R | 32079331 | 3R | 16012739..16012787 | 9..57 | 230 | 98 | Plus |
Blast to na_te.dros performed 2014-11-28 23:19:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2539 | 52..281 | 346 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6946 | 38..272 | 340 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6922 | 82..285 | 314 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2496 | 80..283 | 286 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2444..2665 | 59..281 | 265 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2762..2935 | 680..856 | 265 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2573..2832 | 20..283 | 258 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2780..2986 | 650..856 | 251 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2998 | 148..850 | 241 | 54.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6493..6950 | 41..473 | 201 | 56.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6940..7209 | 13..283 | 200 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6866 | 148..286 | 165 | 65 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1038..1151 | 168..283 | 160 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2391 | 238..283 | 155 | 84.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6778 | 226..285 | 153 | 75 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1111 | 238..288 | 152 | 79.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6791 | 212..283 | 150 | 73 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6818 | 187..283 | 144 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1528..1574 | 238..285 | 129 | 77.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1076..1161 | 188..271 | 127 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6835 | 188..285 | 124 | 66.7 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 963..1011 | 219..267 | 119 | 71.4 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7955..7986 | 240..271 | 115 | 84.4 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9399..9430 | 240..271 | 115 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6793 | 238..272 | 112 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1552..1591 | 235..274 | 110 | 75 | Plus |
| BS | 5142 | BS BS 5142bp | 2032..2074 | 230..269 | 109 | 76.7 | Plus |
MXO01324.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:21 Download gff for
MXO01324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10278-PA | 1..849 | 9..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:54 Download gff for
MXO01324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GATAe-RA | 466..1314 | 9..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:22 Download gff for
MXO01324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GATAe-RA | 466..1314 | 9..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:22 Download gff for
MXO01324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16012739..16012783 | 9..53 | 100 | -> | Plus |
| 3R | 16016228..16016565 | 54..391 | 100 | -> | Plus |
| 3R | 16016709..16017174 | 392..857 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:54 Download gff for
MXO01324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11838461..11838505 | 9..53 | 100 | -> | Plus |
| arm_3R | 11841950..11842287 | 54..391 | 100 | -> | Plus |
| arm_3R | 11842431..11842896 | 392..857 | 99 | | Plus |
