Clone MXO01325 Report

Search the DGRC for MXO01325

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:25
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptSfmbt-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01325.3prime Sequence

854 bp (766 high quality bases) assembled on 2007-03-15

> MXO01325.3prime
ATGGTCTAGAAAGCTTGCTACAACGGTGATTTGTTGGTCTTGTGGGATCT
GGCTCTGCCCGGATTAACCTTGCACTTAAGCTGTGCAATAAGGTCGGAAA
TTTTCAGTGCTGGGCCCACCTTCATGCCCAACAGTGGCATGATATCGTCC
TTGGTCAGCTGCAGGAGTCGCTTTCCGTCGATCTTGTTCCGGCTGAACGT
GTCACAGTGGGCTGTGCAATCGTTCACCCGCAAGAACTGGGATACGTCGT
ACACGTTCCATGTATCCGGCACCAGCTCCAAGTGAGGTTCACTCGAATCG
ATGTCGGCCAGACGCGGAATGTACTTATTATTCGTCGCAGAGGAGTTCGT
TTTGTTACTGCCCGTGGCGAGAGTTACCATCGAGCCCCACCCACTTCCAC
TGCCCGATCCAGCGATCAGATCACTGGACGACTGTGTCGTTGACTGCTCG
GAGATGTGGCTGGTGCTTCCGTCTCCATCGCCATCCGCATCGGGATCCTC
CTCGTCGCCTTCCTCCTCGGGCTGATTGTTCTCGTAAAAGGCAGCATTGT
GATGCTCCGGCTTTAGCTCCAGCTTGATGCTCAGCTTGGGTAAGTGCGGC
GTGGTCTTGAGCGCAATTGTACGCGATTTGACCGACTGAGTATTATTATC
GGTTGGAGTTTTGCCTCCCGCTGCTCCCTTTTTGGGCTTTCGCTTTCGCT
GTATTTTGGGCTTTGGTGCCGGTTTCGGGGCCTGCTGATGTGCTACTCTC
GGTGGGCCCTCTAGCTTATGGTTGAACAGTACACACCATCCGACTGGATA
TATATCGGCTGATTCGCATCCAACCACTGGTCGTACTCATCCGTCCATCC
GTCA

MXO01325.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG16975-PA 2607 CG16975-RA 1804..2233 818..389 2125 99.7 Minus
CG16975-PB 3663 CG16975-RB 2860..3289 818..389 2125 99.7 Minus
CG16975-PA 2607 CG16975-RA 2243..2600 379..22 1790 100 Minus
CG16975-PB 3663 CG16975-RB 3299..3656 379..22 1790 100 Minus
CG16975-PA 2607 CG16975-RA 1767..1803 854..818 185 100 Minus
CG16975-PB 3663 CG16975-RB 2823..2859 854..818 185 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
Sfmbt-RD 4765 CG16975-RD 3122..3955 854..22 4070 99.3 Minus
Sfmbt-RB 4777 CG16975-RB 3134..3967 854..22 4070 99.3 Minus
Sfmbt-RA 3939 CG16975-RA 2296..3129 854..22 4070 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13170459..13170785 22..348 1635 100 Plus
2L 23513712 2L 13171382..13171666 348..632 1365 98.6 Plus
2L 23513712 2L 13171739..13171962 632..854 1055 99.1 Plus
Blast to na_te.dros performed on 2014-11-28 20:12:08 has no hits.

MXO01325.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:21 Download gff for MXO01325.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16975-PB 2824..3663 18..853 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:45 Download gff for MXO01325.3prime
Subject Subject Range Query Range Percent Splice Strand
Sfmbt-RA 2297..3129 22..853 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:41 Download gff for MXO01325.3prime
Subject Subject Range Query Range Percent Splice Strand
Sfmbt-RA 2297..3129 22..853 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:41 Download gff for MXO01325.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13170459..13170784 22..347 100 <- Plus
2L 13171382..13171665 348..631 98 <- Plus
2L 13171739..13171961 632..853 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:45 Download gff for MXO01325.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13170459..13170784 22..347 100 <- Plus
arm_2L 13171382..13171665 348..631 98 <- Plus
arm_2L 13171739..13171961 632..853 99   Plus

MXO01325.5prime Sequence

806 bp (746 high quality bases) assembled on 2007-03-15

> MXO01325.5prime
CAGTCGACATGAACCCATCCGAGCTCCCCATGATGTGGATGAGTAGTCAG
TACAACTCGGAGCGCATTACACTGGAGGATGCGGCCACTCTGCTGGGTCA
TCCCACTGTTGGACTCTCTGTCATGGAGGACCTCTCCGCCCATCAGCCAA
CTTTGGACATGAATCCGATGATGAGCCTAATGGGGGGAGATTTCACTGGT
CAAGCGGCGGCGACTGCTGCGGCACTGGGTGTACAGCCGGGCACCCTGAT
TGCCACCAACTCGAACAACCTGTACGGATTTGCCCACATGGGCGGCCTGC
AGCAGCAACTGCTCCAGCAGTCGGCGGCGGCGGCAGTCTTCCAGAACTAT
GCGGAGGCAATGGATAACGATGTGGAGAACGGTTTGTTTCCCCCCCCCAT
GGAGGCGGTCGTGGACGATGACAACCAAGTGTACGGTCAGAGGGACAATA
ACTTTGATGATAATGGATCCGAGTTGGAGCCCAAGCAAGAGATTATCAAC
ATCGACGACTTTGTGATGATGAACGAGGACAATAATTCGTACGATGGCAC
CGACTTTATGACCTCCTCCGATAAGGACATTTCGCAGTCCTCCTCCTCCT
GCATGGCACAGATGCCCGGAAGCTTGGGCGTCCCTGGAGTCGAGCACGAT
CTTTTGGTTCCACTGCCCGATGGCCTGCTGCACCACAAGCTGCTGGGCAC
AACTCTGGTCCCTGCGATGGGTACGCTAAATGGCAATGCCTTTGGCAACA
TAATGGTCAGCACTGAAAACACATCCAGCAAGCAAATGCAGCGCACCTAT
AGTACG

MXO01325.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG16975-PB 3663 CG16975-RB 389..798 397..806 2025 99.7 Plus
CG16975-PB 3663 CG16975-RB 1..374 9..382 1820 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:25
Subject Length Description Subject Range Query Range Score Percent Strand
Sfmbt-RD 4765 CG16975-RD 300..1097 9..806 3810 98.5 Plus
Sfmbt-RC 4846 CG16975-RC 312..1109 9..806 3810 98.5 Plus
Sfmbt-RB 4777 CG16975-RB 312..1109 9..806 3810 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13174626..13175277 806..155 3110 98.5 Minus
2L 23513712 2L 13175666..13175813 156..9 710 98.6 Minus
Blast to na_te.dros performed on 2014-11-28 22:02:24 has no hits.

MXO01325.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:22 Download gff for MXO01325.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16975-PB 1..798 9..806 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:34 Download gff for MXO01325.5prime
Subject Subject Range Query Range Percent Splice Strand
Sfmbt-RB 312..1109 9..806 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:07 Download gff for MXO01325.5prime
Subject Subject Range Query Range Percent Splice Strand
Sfmbt-RB 312..1109 9..806 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:07 Download gff for MXO01325.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13174626..13175276 156..806 98 <- Minus
2L 13175667..13175813 9..155 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:34 Download gff for MXO01325.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13174626..13175276 156..806 98 <- Minus
arm_2L 13175667..13175813 9..155 98   Minus