MXO01326.3prime Sequence
823 bp (761 high quality bases) assembled on 2007-03-15
> MXO01326.3prime
ATGGTCTAGAAAGCTTGCCGCGTGTCCAATTTTCTCCGTATTTGTAGACG
ACAGCGTTCCCGTTTCATTTTCCGGTGCCGTTGTTGCATTCGTAGGCGAG
GCATTTGTGCTTGAGGATTGGGAGGCGTACTTGCAGGTTGTTGTCAGGCA
TCGACATCCAACACAGGAGCGATGTTCCACGCGCCAGAATTTTTCTCCGT
AGTCAAAGCATATTTCCTCTCCGGCATCGATGTCACGGCAGGAAAAAAAG
GCGATCTTAGGGAATCTGTAGTCCTGATGCTCGTAGAAAACACGAACGGG
CAAAACATTCGGCTCACACGAGTGGTTAAAAAACCGGGTTACATTTCCAT
AATAGTTGGCATCGATGCAGTGCCCGTTGTCTTGGTCCCCCCAGTAGCTG
TCATCGGTGCGTCGATCTGCCTCCATCGCGGTCAAAATCTCACCCGTATA
ACTGCCCACAAAAGTGCCTTTGGGTACATTGGCCAGCGCCCGTACTCCCC
AGCCCTTCGCCTGATCCTCGCACTCGACAATTTGTAGGGGTGTCCGTGTA
CCATTCTGCACCACGCGGTTTTTGCAGGACAGCTGGTTGCAACCGCAGAC
GTCGTTGCATTCGAAGATTACCGCAGGATCCTCGTAGTTAAAGTCGGCGT
TTAGCCGACTTTCTGCCGTGTACCAATTCTGCGAGGAGGCTCCATTGCAC
TGACAGCGATCGCTACTGCAACTATCCAGGCAGGAGCAGATGCGCATTTG
AGAAACGCGTCGGTCAATCTGCACTGAATTCTGCTGGATAATGCATTGTG
TTACGTAACGAAAATCCGGCCAC
MXO01326.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2995-PA | 4914 | CG2995-RA | 4107..4537 | 823..393 | 2130 | 99.7 | Minus |
| CG2995-PA | 4914 | CG2995-RA | 4549..4911 | 381..19 | 1815 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G9a-RB | 7235 | CG2995-RB | 5039..5843 | 823..19 | 3905 | 99 | Minus |
| G9a-RA | 6538 | CG2995-RA | 4979..5783 | 823..19 | 3905 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 252428..252803 | 584..209 | 1775 | 98.1 | Minus |
| X | 23542271 | X | 252120..252360 | 823..583 | 1190 | 99.6 | Minus |
| X | 23542271 | X | 253068..253258 | 209..19 | 955 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:40:10 has no hits.
MXO01326.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:23 Download gff for
MXO01326.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2995-PA | 4107..4914 | 18..823 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:26 Download gff for
MXO01326.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| G9a-RA | 4979..5789 | 12..823 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:22 Download gff for
MXO01326.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| G9a-RA | 4979..5789 | 12..823 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:22 Download gff for
MXO01326.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 252120..252360 | 583..823 | 99 | -> | Minus |
| X | 252430..252803 | 209..582 | 98 | -> | Minus |
| X | 253069..253264 | 12..208 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:26 Download gff for
MXO01326.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 147102..147297 | 12..208 | 98 | | Minus |
| arm_X | 146153..146393 | 583..823 | 99 | -> | Minus |
| arm_X | 146463..146836 | 209..582 | 98 | -> | Minus |
MXO01326.5prime Sequence
899 bp (703 high quality bases) assembled on 2007-03-15
> MXO01326.5prime
CAGTCGACATGACGGACTTTGTTGAGCTGATGAACAGCATGTCCAGTACA
TTCAATAGCGACTGTGCTACTTCAACAGCGGAGGGTGGTACTTTGCTAAA
TCTGAACTTGGCGGAAGACAAAACCCTCAAGTGGCGTAATTTGGCCAATA
ACCAGTTCGCTAGTAAAGAAAAGAAGCACAAGGACAAGGAGGAGGAGGAG
CGCAAGGAGGCAAGGAATCAAGAGGAAATCGAAGACATCAAAGCACTTTT
GGCAGATGTTGTCGATGCGGCCGCTGTCAAGCTGGAAGAAGAAGAAGCGC
AGAATGCAGAAAAAGTCGAACCACATACAAAATGCGAAATAGAGGAAGAA
GGTAGGAAGGAAATGGAGTACGATCAAGATGTCGCTTATCACCCCCCCGA
AATGGAAAAAAAGCAGAATGGCAAAGCAACATCCATAACAGTAAAGATGG
AAAGCAACGAGCGTGCAGAGAAACACGCAACGGAAATTGCAACGACGTCG
ACAGAGAGATGGGAAAACGAAAGCTTTAAAACTGAGCAGCAAAATAAAAA
AGCTGCTGAGAAAGAAGAAGAACCCATACTAGCAGCAACACAAAAATTGG
AAGCAAATGCAGAACCACTGACAACAACAAGAATTGAGGTAGCAGTAGCA
TCTCCACTTGTTGTTAGTTCTGCTAGCGTTAAACTCGCTGCTGACGCAAC
CAACCAAATGCGAGCAGCGACGTCGGCAGGAGCAGCGACATTAGCTGATA
AAAATGTACAAGTTTCGCCCGGTGGAACGCGACGGTCTCGAAGAACACCC
AGACCCATAGACACGCCCACTTCAGTTACTGATGAACATGTTCAGGTGGA
GAATAAAAAATTTGGAAAGTCGGAGCAGTATACGGATTGTAGTAGCCAT
MXO01326.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2995-PA | 4914 | CG2995-RA | 389..891 | 397..899 | 2515 | 100 | Plus |
| CG2995-PA | 4914 | CG2995-RA | 1..377 | 9..385 | 1885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G9a-RB | 7235 | CG2995-RB | 873..1763 | 9..899 | 4350 | 99.2 | Plus |
| G9a-RA | 6538 | CG2995-RA | 873..1763 | 9..899 | 4350 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 246850..247599 | 9..758 | 3645 | 99.1 | Plus |
| X | 23542271 | X | 248382..248525 | 756..899 | 720 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:33:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6927 | 472..656 | 143 | 57.8 | Plus |
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 5921..5998 | 565..643 | 131 | 64.6 | Plus |
MXO01326.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:23 Download gff for
MXO01326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2995-PA | 1..891 | 9..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:28:34 Download gff for
MXO01326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| G9a-RA | 865..1763 | 1..899 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:16:49 Download gff for
MXO01326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| G9a-RA | 865..1763 | 1..899 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:16:49 Download gff for
MXO01326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 246842..247596 | 1..755 | 98 | -> | Plus |
| X | 248382..248525 | 756..899 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:28:34 Download gff for
MXO01326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 140875..141629 | 1..755 | 98 | -> | Plus |
| arm_X | 142415..142558 | 756..899 | 100 | | Plus |
