MXO01328.3prime Sequence
643 bp (643 high quality bases) assembled on 2007-03-15
> MXO01328.3prime
TCTCCGAAGAGGGCGCGCCAAACGAATGGTCTAGAAAGCTTGCAACCTAT
GGGGANATGGTAGGNNAGGAGGAGGANTNNATAAGNNAGAGNAGGTGTAA
NATGGGGNAGGGGAGTTTTAANATAGTGAGGNAGTTGGTGTAGATGTGGN
NGTGGATGANNNANATGTATATGGAGTTGTANANNAGTGGGTAAANTGAT
NNNANGAAGAGATAGAATATAAAGNNNATGAAGAAGNGATGGTTTNTGAG
TNNAATGGAGNAGNNGGTGTAGATATAGTGGTGATNNNGNTTNAGAATGG
ANANTTTGNAGGGNTTGNAATGGNAAGATNTGGGTGGTGNTAGNTTNTGG
TTTTTGTTGNANTNANGNNAATTTAATTGATNNGATGGTGGTTNNANNTT
TTTTTTTTTTTCCCCCCCCCCAATCATCATGCAGGCAATCATAAAAAAAA
TGATGTTAAACACCAGGAACATGGCCATAAGAAAGGTGAAGGTGTGGAAG
AAGCCACCCGGTTCATGGAAGGCAGGCAGCACCACCACAATCTCGAACAT
AAACACCACCGGGAGAAAGACCGCAATGATGAGGAAGCACAAGATGTCCA
CCATCCGGCTGGGCATTGGGTTGCTCCGGATTCTCATGTCGAC
MXO01328.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10344-PA | 597 | CG10344-RA | 1..187 | 637..451 | 935 | 100 | Minus |
| CG10344-PB | 837 | CG10344-RB | 1..187 | 637..451 | 935 | 100 | Minus |
| CG10344-PA | 597 | CG10344-RA | 353..432 | 285..206 | 160 | 85 | Minus |
| CG10344-PB | 837 | CG10344-RB | 353..432 | 285..206 | 160 | 85 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10344-RA | 1132 | CG10344-RA | 64..653 | 638..49 | 1616 | 82 | Minus |
| CG10344-RB | 1190 | CG10344-RB | 64..609 | 638..93 | 1510 | 82.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22426697..22426914 | 421..638 | 970 | 96.3 | Plus |
| 2R | 25286936 | 2R | 22426314..22426571 | 93..350 | 622 | 78.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:22:45 has no hits.
MXO01328.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:24 Download gff for
MXO01328.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10344-PB | 1..217 | 421..637 | 96 | == | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-05 00:30:12 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 22:20:47 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 22:20:47 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 00:30:12 has no hits.
MXO01328.5prime Sequence
678 bp (671 high quality bases) assembled on 2007-03-15
> MXO01328.5prime
CTCCCAAAGGAAGTTATNAGTNGANATGAGAATNNGGAGNACCCTAAAAA
GAGTGGGATGGTGGANATNTTGTGTTTNNTATNATTGGGGTTTTTNTGGG
GGTGGTGTTTATGTTCCAGATTGTGGTGGTGTTGNTTGNTTTNAATGAAN
GGGGTGGTTTAATTAAAANTTTTATTTTTATTATGGNGATGTTGGTGGTG
TTTAAAATAAAGGGAAATATGATTGNTTGAATGATGATTGANANAAGTGT
AAATGTGAAAAAGGTGGAATTATTATTGGATTAGTTGAATTGGNGTGAGT
GNGGNGAGTGNNAGAAGTTAGNANNANNNAGATTTTGGNATTTTTTTTTT
TGNAAAGTGTGNATTNTGAAGTGGGATGAGAAATGTATATATATTTTTTT
TTCCCCCCCCCACGAAANAANNGNTTNTTAAAAAAAAAAAGAGGGGATGT
NNTTNGTGGGATNNGTTTANGNNNTGGTGTATTATTNNATATANATGTGG
GTNATNNANGGNNANATTTANAGNAANTGGGTGAGGGTGTTAAAATTNGN
NTGGNNNATGTANANTTGTTNTGGTTATGGAGTNTTNTTNNTGGNNTAAN
ATGTGNNNATTGTTTGNAAGTTTTNTAGAANATTNGTTTGGNGNGNGGGN
NNAGGTAAGTGGTTATAATNATAATNAT
MXO01328.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10344-PA | 597 | CG10344-RA | 173..246 | 196..269 | 188 | 89.1 | Plus |
| CG10344-PB | 837 | CG10344-RB | 173..246 | 196..269 | 188 | 89.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10344-RB | 1190 | CG10344-RB | 96..362 | 56..321 | 520 | 77.9 | Plus |
| CG10344-RA | 1132 | CG10344-RA | 96..362 | 56..321 | 520 | 77.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22426682..22426836 | 255..101 | 301 | 78.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:22:39 has no hits.
MXO01328.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 19:15:25 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-05 01:20:45 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-29 00:09:52 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-29 00:09:52 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 01:20:45 has no hits.
