MXO01329.3prime Sequence
786 bp (785 high quality bases) assembled on 2007-03-15
> MXO01329.3prime
ATGGTCTAGAAAGCTTGCTTCGCTGATGTTCATAGCAGATGTGTCCGAGC
TCACATCTGCAATGTGGAATGAGGCATCTTCGGCGGGCATGTCATCCTCA
TCGGTGTACAATCGGCGTAGGCGCTCCTTATAGAGTTCGCTATCAGGATT
ATTGGCTTGATTTCGGCACTTGTCCAACTTTTTCTCGATGGCCTTGACCT
TCTCCCGATCGGGCTGCTGATATTGCTTCACCATTATGCGAATTTTTCGC
ACGGCATCTATGAGTCCGGGTAGCTTCTCCCTGGCGGAGACAAACAGAAG
ATCCGTCACATAGCTATCGAGATTCTCTTGCTCTCTGCTGGCCGCGTGGA
GGACGGCAGCCAATGCAATTTGCGAAGGTTTATCCCCCCCCCCGGCATCC
GAGTAGTACGTGGAATCAATGAAACTATCAATATGTGGCCGCAGACGATC
TGGATTCTGCATATTGCTGCGAGTTTTTATATCTATCAGGAAACCCTCGA
TGGGTCTGAACGGATTGTGTATGGTGAGGTAGTAGTTGAGCTGTCCAATC
AGCAGTAATTCATTGGACAACACTATGTCGGTGGCCTTGTTCCTGTCGCC
CTTGATGTTGTTCACGAACTGGTTGATGGACACGTTGAACTCCTCAACTT
TGCAGGCAACGAACACGCATGTGGCTAGAATCTCCTTGGGGTGATAGTCC
ATGGGGGAGTTGTTCAGATAGAACCGCTTGAAGTAGTGGAAGGCCGTGCC
CACAACGCACTTGGGCATCGTCGGTTCGAAGCGGCG
MXO01329.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7405-PA | 975 | CycH-RA | 205..597 | 786..394 | 1940 | 99.7 | Minus |
| CG7405-PA | 975 | CycH-RA | 613..969 | 378..22 | 1785 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycH-RA | 1065 | CG7405-RA | 214..978 | 786..22 | 3660 | 98.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21822396..21822597 | 676..475 | 995 | 99.5 | Minus |
| 3L | 28110227 | 3L | 21822657..21822885 | 474..246 | 995 | 95.6 | Minus |
| 3L | 28110227 | 3L | 21822941..21823052 | 245..134 | 560 | 100 | Minus |
| 3L | 28110227 | 3L | 21823111..21823222 | 133..22 | 560 | 100 | Minus |
| 3L | 28110227 | 3L | 21822210..21822319 | 786..677 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:29:23 has no hits.
MXO01329.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:25 Download gff for
MXO01329.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7405-PA | 205..975 | 18..786 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:13 Download gff for
MXO01329.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycH-RA | 214..981 | 19..786 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:30 Download gff for
MXO01329.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycH-RA | 214..981 | 19..786 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:30 Download gff for
MXO01329.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21823111..21823229 | 14..133 | 95 | -> | Minus |
| 3L | 21822657..21822885 | 246..474 | 95 | -> | Minus |
| 3L | 21822941..21823052 | 134..245 | 100 | -> | Minus |
| 3L | 21822210..21822319 | 677..786 | 100 | -> | Minus |
| 3L | 21822396..21822597 | 475..676 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:13 Download gff for
MXO01329.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21816041..21816152 | 134..245 | 100 | -> | Minus |
| arm_3L | 21816211..21816329 | 14..133 | 95 | -> | Minus |
| arm_3L | 21815310..21815419 | 677..786 | 100 | -> | Minus |
| arm_3L | 21815496..21815697 | 475..676 | 99 | -> | Minus |
| arm_3L | 21815757..21815985 | 246..474 | 95 | -> | Minus |
MXO01329.5prime Sequence
659 bp (658 high quality bases) assembled on 2007-03-15
> MXO01329.5prime
CCCCAAAAGGAAGTTATNAGTNGANATGTATNNTGTGAGNTCCATAAAAG
GTGTGTGGAATTNGNNAATGAGGGTNAGTTNATGGAGTTGGGGGTGGAGA
AGAANAGTAAGTATATCCCCTAGAAGGAGGAGGAGGNGNAGGGTNGTGAN
TTNAATGAGTATTTTATTAGGTGGGGGGAGGAGNGTTTGTTGTTGAAGAA
GTANGAGATTTATTTGTTNGATTTGTGNGGNAGTTTNGAAAAGAAGATGN
NAAAGTGGGTTGTGGGNATGGTTTTNTATTATTTNAAGGGGTTTTATATG
AANAATTNNNNNATGGATTATNANNAAAAGGAGATTNTAGNTATTTTTTT
TTTTGTTGNNTGNAAAGTTGAGGAGTTGAAGGTGTAAATAAATTATTTGT
TTTTTCCTCACCCCGGNGANAGGAANAAGGAAAAAAAAAAAAAGGGGGGG
GGTGAATTANTGGTGATTGGANAGNTNAATTATTANNTNANNATANANAA
TNNGTTNAGAAANATNGAGGGTTTNNTGATAGATATAAAAANTNGNAGNA
ATATGAAGAATNNAGATGGTNTGGGGNNANATATTGATAGTTTNATTGAT
TNNANGTANTANTNGGATGGNTGTNTTNTGNATANGNNTTNGAAAATTGG
ATTGGNTGG
MXO01329.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 12:04:50 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycH-RA | 1065 | CG7405-RA | 438..640 | 453..655 | 377 | 73.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed on 2014-11-28 23:10:17 has no hits.
Blast to na_te.dros performed on 2014-11-28 23:10:18 has no hits.
MXO01329.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-05 01:12:21 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-29 00:01:59 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-29 00:01:59 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 01:12:21 has no hits.
