MXO01330.3prime Sequence
890 bp (781 high quality bases) assembled on 2007-03-15
> MXO01330.3prime
CCGAGAAGGCGCGCCAAANGAATGGTCTAGAAAGCTTGCCGCCTGTAAAT
GANANANATGNNGTTNGAGATNGATGGNNNGGAAGAAGGGNNGNANGNAG
AATTNANAGGTGTAAGTGGNGTGTGGATGGNNGNGATNNGTNTTTATGTG
ATNGGTGAGGTGGNANNGNTGGGTGAATNTNTTTNNGNANGTGGGAAANA
GATGNGGTNGGTGGTNNAGGTGNAGAATGTTAANGTGNTTNTTTAGGTGA
TNAGNAGTGGNGAAGTNNGNTTGGTAAATANNGNANANATGAANGNGNAA
GAGGATGTGAANANGTTGNAGATGGGANNGNAGGGNTTNTNGGTTGTTTT
GTTTTTTGNNANAGTAGNAGNAGTTTAGGGGANTGGGTTAGTGAANTTGT
TTTATTTGCCCCCCCCCCCTCAGACTGCCGGGGAATCAAAAAAAAAAGAG
GGGACACACGAAAACGCTCGGCTTAGCGTTCACAATGCACGACTCCTTGT
CCAGGTCGGTGGGCCAGCCAAAGGTGAGATCGTCGTCCCAGTCGATGCTG
GGCAGTATGTTCTCAATGTTCTCCTCTAGCATCTCAAGATCCTCCATTTC
ATCAACCTGGCTGTCTGCATCACTGGCCGTGGACTTCAGGGTACGCAGGC
GATGCACCTCCTCGGCGTGCTCCTGCAGCTCCAGCATCCCGCTAAAGGTC
TTAACGTCGTTGCAGTTGTCCGTGCACATGTCGCAGTAGAACAGCGACTG
CTGGCCGTGCCAACTGGCAACATGACGGTAAAGAAACGTGGCTGACGCGT
ACTTCTTGCCGCACTGCAGGCACAGGAACTGGCCATCGTTGTGCTTTCGC
TCCCGATGCCGCTCCAGCCGGGCCTCCTCGCCGAAAAGCG
MXO01330.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7101-PA | 1059 | CG7101-RA | 206..645 | 890..451 | 2200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7101-RA | 1454 | CG7101-RA | 278..1105 | 890..63 | 2766 | 86.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18831218..18831774 | 619..63 | 1411 | 80.3 | Minus |
| X | 23542271 | X | 18830868..18831143 | 890..615 | 1380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:33:36 has no hits.
MXO01330.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:25 Download gff for
MXO01330.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7101-PA | 206..682 | 414..890 | 97 | == | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:28:38 Download gff for
MXO01330.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7101-RA | 278..754 | 414..890 | 97 | == | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:16:54 Download gff for
MXO01330.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7101-RA | 278..754 | 414..890 | 97 | == | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:16:54 Download gff for
MXO01330.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18831223..18831423 | 414..614 | 93 | == | Minus |
| X | 18830868..18831143 | 615..890 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:28:38 Download gff for
MXO01330.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18724901..18725176 | 615..890 | 100 | -> | Minus |
| arm_X | 18725256..18725456 | 414..614 | 93 | == | Minus |
MXO01330.5prime Sequence
706 bp (698 high quality bases) assembled on 2007-03-15
> MXO01330.5prime
CCCTAAAAGGAAGTTATNAGTNGANATGGAANNGGTGNNNATCCCGAAAA
AAGGGTTGGGAGTGAGTAATTGTGGAGTTTTGGGGTTGGGGGNGAAGAAG
NGGGGNAAGAAGNGTANGCCCAAGTGGGGGGTTTGTTTTGAGGAGTTNTN
TNGTNATGTGGAGGAAAAGGGGAAGGAGAAGNAGTGGTNGGTGAGGGTGA
GGNGTTTTTTNGTNTGGNNNNATTGGTTGATGTTTTTGGGAGAGGAGGGN
GGGTTGGAGNGGNATNGGGAGTGAAAGTANAANGATGGNNAGTTNTTGTG
NTTGGAGTGGGGAAAGAAGTANGNGTNAGNNANGTTTNTTTATTTTTTTT
TTGTNAGTTGGNANGGNNAGNAGTTGTTGTTGTAATGAGANATGTGTTTT
TTTTTCCCCCCCCCCGTTAAGANNTTTAGTGGGATAAAAAAAAGGAGGGA
GGANGNNGAGGAGGTGNATNGNNTGGGTANTTTGAAGTNNANGGNNAGTG
ATGNAGAAAGNNAGGTTGATGAAATGGAGGATNTTGAGATGNTAGAGGAG
AATATTGAGAANATANTGGNNAGNATNGAATGGGANGAAGATNTNANNTT
TGGNTGGNNNANNGANNTGGANAAGGAGTNGTGGATTGTGAANGNTAAGN
NGAGNGTTTTNGTGTGTNTNTTNTGNGNNAANGGATTNNNNGGNAGTTTG
AGNTTG
MXO01330.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7101-PA | 1059 | CG7101-RA | 488..540 | 513..565 | 183 | 92.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7101-RA | 1454 | CG7101-RA | 544..714 | 497..667 | 413 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18831229..18831383 | 513..667 | 381 | 78.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:07:51 has no hits.
MXO01330.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 19:15:26 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-05 00:52:13 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 22:50:31 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 22:50:31 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 00:52:13 has no hits.
