MXO01332.3prime Sequence
821 bp (786 high quality bases) assembled on 2007-03-15
> MXO01332.3prime
ATGGTCTAGAAAGCTTGCGGCGTACAGCTCCTCTCCATCGGGAATGGCTT
CCTCGTACTCGAAGTCCTCAAAATTTGCGTCCTCATCCTGAAGTACCTCG
TGGTCCTCATATTGTTCCTCGTCAATGTTATCTAACATTACGTCCAGTTC
AGCCTGGTTGTCCTCCATTTCTGCCTGCCCCTCTTCCATATATCCCGGAA
ACTCCGCCGGATCGACTTCAGACTGGAATTCCTCTTTTGGACCATTAACC
AGCAAGTTGACCCGCTTGCGGTGATACTTTGTGGAGTAGTGCCGATGCAA
AAACTGCGCCTCCTTGAACTCCTTGTTGCATGTGAGGCAGATATGGACAT
CCGGTTGGTCACTCTTGTGCCCCTCCTCTTGCTTCCCCCCCCCCTTCTCG
CTGTTGAATCGTTTGACAAATATTTTGCACGGGTGCACCAGCTCGTTGGC
ATGCATTTGACGTTCATGACGACAGCGGCTGGGACTATTGGCGAATCCCA
TACCGCAGAACTTGCAGACGTACGGTTTCTCGCCCTTGTGATGGACTCGA
ATGTGCAATCGGAGCAGTGGCATGGTGTAGAACTTGCGACCGCACTCGTC
GCATGAAAACTTCTCCTCGAAGTGCCGCAGCTTGTGATCCTTCATGTTGC
TGTGATCGTTGAACGACCAACCGCACTGGTCGCACACGTATCGCTTTATC
GAGCGATCGACCTTGGGTTTTGGTCGCCGCTTTCTGGGCTTTCGGACGTG
CTCCCGCGGAGGTGGCGGTGGACTATCTGCCTTCTCGACCACAGGCACAC
GAAGCCGCTTGACCCTGACTC
MXO01332.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7357-PA | 1293 | CG7357-RA | 488..889 | 821..420 | 2010 | 100 | Minus |
CG7357-PA | 1293 | CG7357-RA | 924..1287 | 385..22 | 1795 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7357-RA | 1645 | CG7357-RA | 593..1392 | 821..22 | 3880 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17808216..17808576 | 461..821 | 1805 | 100 | Plus |
3R | 32079331 | 3R | 17807660..17807978 | 22..340 | 1595 | 100 | Plus |
3R | 32079331 | 3R | 17808036..17808156 | 341..461 | 485 | 93.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:22:54 has no hits.
MXO01332.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:27 Download gff for
MXO01332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7357-PA | 488..1293 | 15..821 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:30:20 Download gff for
MXO01332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7357-RA | 593..1402 | 10..821 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:52 Download gff for
MXO01332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7357-RA | 593..1402 | 10..821 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:52 Download gff for
MXO01332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17807650..17807978 | 10..340 | 98 | <- | Plus |
3R | 17808036..17808155 | 341..460 | 93 | <- | Plus |
3R | 17808216..17808576 | 461..821 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:30:20 Download gff for
MXO01332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13633372..13633700 | 10..340 | 98 | <- | Plus |
arm_3R | 13633758..13633877 | 341..460 | 93 | <- | Plus |
arm_3R | 13633938..13634298 | 461..821 | 100 | | Plus |
MXO01332.5prime Sequence
893 bp (786 high quality bases) assembled on 2007-03-15
> MXO01332.5prime
CAGTCGACATGAGCACCGAGTGTCGGCTCTGCGGCGAGCGCATCTTCACG
CCGCACCCAAAGAACATCTTCGAGAAGCGCAATCATCGCATTCGGATGGC
CACCGAGCAAATCACGGGCTTAGAGATCGTTTTAGAGAATATGCTGCCCC
AGCACATATGCGCTTGTTGTCTCCTGGACCTGACCCAAGCCGTAGCCTTC
AGGCAGCGATGCCTGGAGACGCACGCAAATCTCCACCAGAGGATCTCCTC
GAAGGCGGGTGTCGCCTCAAAAGGCTCCCCGGAGGTTTCGCCAGTGCTTA
GTGATCCGCTGCTGAAACGGGAGGTGCTGGATGATACAGTAGACACCGAG
GACGATAAGGAGCTACTGGACGATGATAAGGATTTTTTGCCCCCCCCCCA
GGATTTCTTGGAGGACGAAAAAAAAAAAGGAAGATATCCTCCGGCCAAAA
AAATCCGGATCGAGGACCAAAATTTCCCGAACAGACAGTCCCCACGAGTC
AGGGTCAAGCGGCTTCGTGTGCCTGTGGTCGAGAAGGCAGATAGTCCACC
GCCACCTCCGCGGGAGCACGTCCGAAAGCCCAGAAAGCGGCGACCAAAAC
CCAAGGTCGATCGCTCGATAAAGCGATACGTGTGCGACCAGTGCGGTTGG
TCGTTCAACGATCACAGCAACATGAAGGATCACAAGCTGCGGCACTTCGA
GGAGAAGTTTTCATGCGACGAGTGCGGTCGCAAGTTCTACACCATGCCAC
TGCTCCGATTGCACATTCGAGTCCATCACAAGGGCGAGAAACCGTACGTC
TGCAAGTTCTGCGGTATGGGATTCGCCAATAGTCCCAGCCGCTGTCGTCA
TGAACGTCAAATGCATGCCAACGAGCTGGTGCACCCGTGCAAA
MXO01332.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7357-PA | 1293 | CG7357-RA | 423..885 | 431..893 | 2315 | 100 | Plus |
CG7357-PA | 1293 | CG7357-RA | 1..377 | 9..385 | 1835 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7357-RA | 1645 | CG7357-RA | 106..990 | 9..893 | 4095 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17808216..17808948 | 856..124 | 3365 | 97.3 | Minus |
3R | 32079331 | 3R | 17809001..17809117 | 125..9 | 555 | 98.3 | Minus |
3R | 32079331 | 3R | 17808119..17808156 | 893..856 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:05:34 has no hits.
MXO01332.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:28 Download gff for
MXO01332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7357-PA | 1..882 | 9..890 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:04 Download gff for
MXO01332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7357-RA | 104..987 | 6..890 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:15 Download gff for
MXO01332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7357-RA | 104..987 | 6..890 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:15 Download gff for
MXO01332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17808122..17808155 | 857..890 | 100 | <- | Minus |
3R | 17808216..17808946 | 126..856 | 97 | <- | Minus |
3R | 17809001..17809119 | 6..125 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:04 Download gff for
MXO01332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13633844..13633877 | 857..890 | 100 | <- | Minus |
arm_3R | 13633938..13634668 | 126..856 | 97 | <- | Minus |
arm_3R | 13634723..13634841 | 6..125 | 97 | | Minus |