Clone MXO01332 Report

Search the DGRC for MXO01332

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:32
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG7357-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01332.3prime Sequence

821 bp (786 high quality bases) assembled on 2007-03-15

> MXO01332.3prime
ATGGTCTAGAAAGCTTGCGGCGTACAGCTCCTCTCCATCGGGAATGGCTT
CCTCGTACTCGAAGTCCTCAAAATTTGCGTCCTCATCCTGAAGTACCTCG
TGGTCCTCATATTGTTCCTCGTCAATGTTATCTAACATTACGTCCAGTTC
AGCCTGGTTGTCCTCCATTTCTGCCTGCCCCTCTTCCATATATCCCGGAA
ACTCCGCCGGATCGACTTCAGACTGGAATTCCTCTTTTGGACCATTAACC
AGCAAGTTGACCCGCTTGCGGTGATACTTTGTGGAGTAGTGCCGATGCAA
AAACTGCGCCTCCTTGAACTCCTTGTTGCATGTGAGGCAGATATGGACAT
CCGGTTGGTCACTCTTGTGCCCCTCCTCTTGCTTCCCCCCCCCCTTCTCG
CTGTTGAATCGTTTGACAAATATTTTGCACGGGTGCACCAGCTCGTTGGC
ATGCATTTGACGTTCATGACGACAGCGGCTGGGACTATTGGCGAATCCCA
TACCGCAGAACTTGCAGACGTACGGTTTCTCGCCCTTGTGATGGACTCGA
ATGTGCAATCGGAGCAGTGGCATGGTGTAGAACTTGCGACCGCACTCGTC
GCATGAAAACTTCTCCTCGAAGTGCCGCAGCTTGTGATCCTTCATGTTGC
TGTGATCGTTGAACGACCAACCGCACTGGTCGCACACGTATCGCTTTATC
GAGCGATCGACCTTGGGTTTTGGTCGCCGCTTTCTGGGCTTTCGGACGTG
CTCCCGCGGAGGTGGCGGTGGACTATCTGCCTTCTCGACCACAGGCACAC
GAAGCCGCTTGACCCTGACTC

MXO01332.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7357-PA 1293 CG7357-RA 488..889 821..420 2010 100 Minus
CG7357-PA 1293 CG7357-RA 924..1287 385..22 1795 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7357-RA 1645 CG7357-RA 593..1392 821..22 3880 99 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17808216..17808576 461..821 1805 100 Plus
3R 32079331 3R 17807660..17807978 22..340 1595 100 Plus
3R 32079331 3R 17808036..17808156 341..461 485 93.4 Plus
Blast to na_te.dros performed on 2014-11-28 21:22:54 has no hits.

MXO01332.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:27 Download gff for MXO01332.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7357-PA 488..1293 15..821 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:30:20 Download gff for MXO01332.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7357-RA 593..1402 10..821 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:52 Download gff for MXO01332.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7357-RA 593..1402 10..821 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:52 Download gff for MXO01332.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17807650..17807978 10..340 98 <- Plus
3R 17808036..17808155 341..460 93 <- Plus
3R 17808216..17808576 461..821 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:30:20 Download gff for MXO01332.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13633372..13633700 10..340 98 <- Plus
arm_3R 13633758..13633877 341..460 93 <- Plus
arm_3R 13633938..13634298 461..821 100   Plus

MXO01332.5prime Sequence

893 bp (786 high quality bases) assembled on 2007-03-15

> MXO01332.5prime
CAGTCGACATGAGCACCGAGTGTCGGCTCTGCGGCGAGCGCATCTTCACG
CCGCACCCAAAGAACATCTTCGAGAAGCGCAATCATCGCATTCGGATGGC
CACCGAGCAAATCACGGGCTTAGAGATCGTTTTAGAGAATATGCTGCCCC
AGCACATATGCGCTTGTTGTCTCCTGGACCTGACCCAAGCCGTAGCCTTC
AGGCAGCGATGCCTGGAGACGCACGCAAATCTCCACCAGAGGATCTCCTC
GAAGGCGGGTGTCGCCTCAAAAGGCTCCCCGGAGGTTTCGCCAGTGCTTA
GTGATCCGCTGCTGAAACGGGAGGTGCTGGATGATACAGTAGACACCGAG
GACGATAAGGAGCTACTGGACGATGATAAGGATTTTTTGCCCCCCCCCCA
GGATTTCTTGGAGGACGAAAAAAAAAAAGGAAGATATCCTCCGGCCAAAA
AAATCCGGATCGAGGACCAAAATTTCCCGAACAGACAGTCCCCACGAGTC
AGGGTCAAGCGGCTTCGTGTGCCTGTGGTCGAGAAGGCAGATAGTCCACC
GCCACCTCCGCGGGAGCACGTCCGAAAGCCCAGAAAGCGGCGACCAAAAC
CCAAGGTCGATCGCTCGATAAAGCGATACGTGTGCGACCAGTGCGGTTGG
TCGTTCAACGATCACAGCAACATGAAGGATCACAAGCTGCGGCACTTCGA
GGAGAAGTTTTCATGCGACGAGTGCGGTCGCAAGTTCTACACCATGCCAC
TGCTCCGATTGCACATTCGAGTCCATCACAAGGGCGAGAAACCGTACGTC
TGCAAGTTCTGCGGTATGGGATTCGCCAATAGTCCCAGCCGCTGTCGTCA
TGAACGTCAAATGCATGCCAACGAGCTGGTGCACCCGTGCAAA

MXO01332.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7357-PA 1293 CG7357-RA 423..885 431..893 2315 100 Plus
CG7357-PA 1293 CG7357-RA 1..377 9..385 1835 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7357-RA 1645 CG7357-RA 106..990 9..893 4095 97.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17808216..17808948 856..124 3365 97.3 Minus
3R 32079331 3R 17809001..17809117 125..9 555 98.3 Minus
3R 32079331 3R 17808119..17808156 893..856 190 100 Minus
Blast to na_te.dros performed on 2014-11-28 21:05:34 has no hits.

MXO01332.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:28 Download gff for MXO01332.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7357-PA 1..882 9..890 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:04 Download gff for MXO01332.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7357-RA 104..987 6..890 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:15 Download gff for MXO01332.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7357-RA 104..987 6..890 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:15 Download gff for MXO01332.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17808122..17808155 857..890 100 <- Minus
3R 17808216..17808946 126..856 97 <- Minus
3R 17809001..17809119 6..125 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:04 Download gff for MXO01332.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13633844..13633877 857..890 100 <- Minus
arm_3R 13633938..13634668 126..856 97 <- Minus
arm_3R 13634723..13634841 6..125 97   Minus