Clone MXO01333 Report

Search the DGRC for MXO01333

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:33
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptGdi-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01333.3prime Sequence

852 bp (835 high quality bases) assembled on 2007-03-15

> MXO01333.3prime
ATGGTCTAGAAAGCTTGCCTGCTCCTCGTCACCCAACTCGTGCTTGATCT
TGGAGAAGTCGAACGTCTCGCCAGTGCCCCGCTTGAATATGTTCAACACA
TCCAGGCAAGTAGTCTCAAAGTGCGTGGTCGCATCGTAAGACTCCGAAAT
AAAGATTTGAGACTCGGATCCATCATCGATCGGCTCCAAATAGTCCGAAA
TGGTTACAAACTTTTGTGCGATCGGCTCCAGCAAGTCCAAGCCAGGCTTG
ATCTCCACCTCCGGGTTCTCGGTCTCAACGGTGGTCGAGACCATGCCCAC
GAACCAACCCTTGGCGGCCACCTGATGAGTGGAGCTCACAAGCGACACAT
AGATGTCCGACTTGCGGCCGACCTGCTTTTGTGGAATGATAATCTGCGTG
GAGAGACCATCCTTGGTGCTGGCCACCGGATGGTCCAGAATGCAAATGCA
GCGAATCACCTTGCCACGCTTGCGCACCTTCTCGGGCACGTAGCTGGGAT
CGCAGTAGACCTGCTTGCACTTGGCGACCTCTTCGCCGGAGCGCACTCCC
ACCACCTTGCCGCCCTCGCCGAGGACAATCTCGTCGATGGGCTTGTCAAG
CATGTAGGTGCCGCCGTAGATGGCCGACAGACGTGCGAATCCCTGGGGCA
GCTCACCCAGGCCGTACATGGGATAAAGGTAGGGCGACTTGCCGTAACGC
GCCAGCGAATCGGAGTAGAGCTTAATCCGCCGGATGGTGTTCACGGCCGG
CTCGTTCAGATACTCATCGTCGCGGAAAAGGGCCAGGGCGTGGCCGGTGA
AGTCCTGCGTGTTCTTGTCCAGTCCGAACTTGTCGTACAGACCCTGCATG
TT

MXO01333.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4422-PA 1332 Gdi-RA 496..1329 852..19 4170 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
Gdi-RC 2501 CG4422-RC 757..1590 852..19 4170 100 Minus
Gdi-RB 2421 CG4422-RB 677..1510 852..19 4170 100 Minus
Gdi-RA 1661 CG4422-RA 677..1510 852..19 4170 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9492087..9492547 19..479 2305 100 Plus
2L 23513712 2L 9492625..9493002 475..852 1890 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:07:50 has no hits.

MXO01333.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:28 Download gff for MXO01333.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4422-PA 496..1332 15..852 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:34 Download gff for MXO01333.3prime
Subject Subject Range Query Range Percent Splice Strand
Gdi-RA 677..1513 15..852 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:40 Download gff for MXO01333.3prime
Subject Subject Range Query Range Percent Splice Strand
Gdi-RA 677..1513 15..852 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:40 Download gff for MXO01333.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9492083..9492545 15..477 99 <- Plus
2L 9492628..9493002 478..852 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:34 Download gff for MXO01333.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9492083..9492545 15..477 99 <- Plus
arm_2L 9492628..9493002 478..852 100   Plus

MXO01333.5prime Sequence

822 bp (694 high quality bases) assembled on 2007-03-15

> MXO01333.5prime
CAGTCGACATGAATGAGGAATACGATGCGATTGTGCTAGGAACGGGCCTC
AAGGAGTGCATCCTCAGCGGGATGCTGTCCGTGTCCGGCAAGAAGGTTTT
GCATATTGATCGAAACAAGTACTACGGCGGCGAGTCCGCCTCGATAACGC
CGCTGGAGGAGCTCTTCCAGCGCTACGGACTGGAGCCGCCCGGCGAACGA
TTTGGGCGTGGCCGCGACTGGAACGTGGACCTGATCCCCAAGTTCCTGAT
GGCCAATGGCCAGCTGGTCAAGCTGCTGATCCACACGGGCGTCACCCGCT
ATCTGGAGTTCAAGTCCATCGAGGGCAGCTACGTTTACAAGGGCGGCAAG
ATAGCCAAGGTGCCGGTGGACCAAAAGGAGGCCCTGTTTTCCCCCCTCCT
GGGTATGTTCGAGAAGCGTCGCTTCAAGAACTTCCTCATCTACGTGCAGG
ATTTCCGAGAAGATGACCCCAAGACCTGGAAGGACTTTGACCCCACCAAG
GCCAACATGCAGGGTCTGTACGACAAGTTCGGACTGGACAAGAACACGCA
GGACTTCACCGGCCACGCCCTGGCCCTTTTCCGCGACGATGAGTATCTGA
ACGAGCCGGCCGTGAACACCATCCGGCGGATTAAGCTCTACTCCGATTCG
CTGGCGCGTTACGGCAAGTCGCCCTACCTTTATCCCATGTACGGCCTGGG
TGAGCTGCCCCAGGGATTCGCACGTCTGTCGGCCATCTACGGCGGCACCT
ACATGCTTGACAAGCCCATCGACGAGATTGTCCTCGGCGAGGGCGGCAAG
GTGGTGGGAGTGCGCTCCGGCG

MXO01333.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4422-PA 1332 Gdi-RA 392..814 400..822 2065 99.5 Plus
CG4422-PA 1332 Gdi-RA 1..378 9..386 1890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
Gdi-RC 2501 CG4422-RC 262..1075 9..822 3935 98.9 Plus
Gdi-RB 2421 CG4422-RB 182..995 9..822 3935 98.9 Plus
Gdi-RA 1661 CG4422-RA 182..995 9..822 3935 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9492684..9493104 822..402 2075 99.5 Minus
2L 23513712 2L 9494238..9494615 386..9 1890 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:12:11 has no hits.

MXO01333.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:28 Download gff for MXO01333.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4422-PA 1..814 9..822 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:46 Download gff for MXO01333.5prime
Subject Subject Range Query Range Percent Splice Strand
Gdi-RA 182..995 9..822 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:33 Download gff for MXO01333.5prime
Subject Subject Range Query Range Percent Splice Strand
Gdi-RA 182..995 9..822 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:33 Download gff for MXO01333.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9492684..9493103 403..822 99 <- Minus
2L 9494222..9494615 9..402 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:46 Download gff for MXO01333.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9492684..9493103 403..822 99 <- Minus
arm_2L 9494222..9494615 9..402 98   Minus