MXO01334.3prime Sequence
853 bp (787 high quality bases) assembled on 2007-03-15
> MXO01334.3prime
ATGGTCTAGAAAGCTTGCATCAATGTCGTCGTCCAGCTCGTCATCATCCA
TCTCCAGCTTGAACTCGCCATCGGTGGTGTGTTGTGCCGAGTGTTGTGCA
AAGCCCTGGGACTCATTGGCCGACTCCAGGTACCCGTTGAACTCATTGTC
CTCGTCATCCGATTCGTACATATTTTCGCCAGTCTTGCCGGTGCCGTAGG
CTTCTACGTATTTGGCAAGGTTTGGAGGCACCCACGACTTGACTCGTTCA
ATGTTCTCCGGCGTGCATTCGCCCTTATCCAGTCCCAATAGGAATCCCAT
ACGCTTGAGCACCTCAATGTCATCGTGCATTTCGAAGGTTTTGTCGAACT
TGAATATGTATTCGGACTTGTCGTTGGTCACACTGCACCTGATTTTCGTG
GACTTGTGCGTGTTCACAATGATGAACGGTAGCTGGATCGAGGCATTCGG
GGAAGGCACCACGCCTTGGCTCTCGTTTCGCTTGTTCCGCTCGACCAATC
CCTTGAACGCCACATGCTGCATGATCATTTCGCGCAACATTTCGTTTTTC
TGTTTTATTCGCTCGCGGCGCTGACAGTTTTCCTCTTCCAGGGCCAGAAA
TGTCTCTGTCGAATTTGCGGGCAGTCCTATCCAGCGAATCTCCTTCTTGT
CCTTGGAAATAACATTGATTGCCATCAGTACGTTGAGCGCATCGTAGACA
CGACGTCGGATATTCTTTTGATCACAGTTGTTGTCGTACGCATTGTTCTT
CATCTCCTCGCTGACCAGGTCGTCGGCCACCTCATTGTANGTGGTCTTGC
CCTTCTCCTCCACCTTTTCGCATACCTTCATCGAGAAATGGCGCAAACCT
TTG
MXO01334.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4654-PA | 1338 | Dp-RA | 501..1335 | 853..19 | 4081 | 99.5 | Minus |
| CG4654-PB | 1326 | Dp-RB | 489..1323 | 853..19 | 4081 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dp-RC | 1913 | CG4654-RC | 501..1335 | 853..19 | 4119 | 99.5 | Minus |
| Dp-RB | 2448 | CG4654-RB | 579..1413 | 853..19 | 4119 | 99.5 | Minus |
| Dp-RA | 2526 | CG4654-RA | 1114..1948 | 853..19 | 4119 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13226086..13226335 | 853..604 | 1239 | 99.6 | Minus |
| 2R | 25286936 | 2R | 13226402..13226641 | 605..366 | 1155 | 98.8 | Minus |
| 2R | 25286936 | 2R | 13226984..13227167 | 202..19 | 920 | 100 | Minus |
| 2R | 25286936 | 2R | 13226845..13226929 | 285..201 | 425 | 100 | Minus |
| 2R | 25286936 | 2R | 13226700..13226783 | 367..284 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:07:58 has no hits.
MXO01334.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:28 Download gff for
MXO01334.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4654-PB | 489..1326 | 16..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:18 Download gff for
MXO01334.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dp-RA | 1114..1954 | 12..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:36 Download gff for
MXO01334.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dp-RA | 1114..1954 | 12..853 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:36 Download gff for
MXO01334.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13226404..13226639 | 368..603 | 98 | -> | Minus |
| 2R | 13226700..13226782 | 285..367 | 100 | -> | Minus |
| 2R | 13226846..13226929 | 201..284 | 100 | -> | Minus |
| 2R | 13226986..13227173 | 12..200 | 98 | | Minus |
| 2R | 13226086..13226335 | 604..853 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:18 Download gff for
MXO01334.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9113591..9113840 | 604..853 | 99 | -> | Minus |
| arm_2R | 9113909..9114144 | 368..603 | 98 | -> | Minus |
| arm_2R | 9114205..9114287 | 285..367 | 100 | -> | Minus |
| arm_2R | 9114351..9114434 | 201..284 | 100 | -> | Minus |
| arm_2R | 9114491..9114678 | 12..200 | 98 | | Minus |
MXO01334.5prime Sequence
866 bp (834 high quality bases) assembled on 2007-03-15
> MXO01334.5prime
GCGGCCGCGACGTCCACATATACCTGCCGTTCACTATTATTTAGTGAAAT
GAGATATTATGATATTTTCTGAATTGTGATTAAAAAGGCAACTTTATGCC
CATGCAACAGAAACTATAAAAAATACAGAGAATGAAAAGAAACAGATAGA
TTTTTTAGTTCTTTAGGCCCGTAGTCTGCAAATCCTTTTATGATTTTCTA
TCAAACAAAAGAGGAAAATAGACCAGTTGCAATCCAAACGAGAGTCTAAT
AGAATGAGGTCGAAAAGTAAATCGCGCGGGTTTGTTACTGATAAAGCAGG
CAAGACCTAAAATGTGTAAAGGGCAAAGTGTATACTTTGGCGTCACCCCT
TACATATTTTAGGTCTTTTTTTATTGTGCGTAACTAACTTGCCCCCTCCA
AACAGGAGGGCTGGAAGAAGCAAACCGCTAACACAGTACATAAAAAAGGA
GACATGAACGATGAACATCAAAAAGTTTGCAAAACAAGCAACAGTATTAA
CCTTTACTACCGCACTGCTGGCAGGAGGCGCAACTCAAGCGTTTGCGAAA
GAAACGAACCAAAAGCCATATAAGGAAACATACGGCATTTCCCATATTAC
ACGCCATGATATGCTGCAAATCCCTGAACAGCAAAAAAATGAAAAATATA
AAGTTCCTGAGTTCGATTCGTCCACAATTAAAAATATCTCTTCTGCAAAA
GGCCTGGACGTTTGGGACAGCTGGCCATTACAAAACACTGACGGCACTGT
CGCAAACTATCACGGCTACCACATCGTCTTTGCATTAGCCGGAGATCCTA
AAAATGCGGATGACACATCGATTTACATGTTCTATCAAAAAGTCGGCGAA
ACTTCTATTGACAGCT
MXO01334.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 12:05:01 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 19:41:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed on 2014-11-28 19:41:56 has no hits.
Blast to na_te.dros performed on 2014-11-28 19:41:57 has no hits.
MXO01334.5prime Sim4 Records
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 20:17:40 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 20:17:40 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 22:42:05 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 22:42:05 has no hits.
