MXO01336.3prime Sequence
785 bp (769 high quality bases) assembled on 2007-03-15
> MXO01336.3prime
ATGGTCTAGAAAGCTTGCCTCTATTACCTGCTGCATTTCATCATTGCGCA
TGCTGCGCAGTCCCTGTTGCTCCTCGAGCTTGTTGCTCATCAGGCTCACC
CAATCACGAGCTTGTCTAAGCGATAGGGAGCTCTGAGATCGTTCGGGTAT
CCGACACGGGAACAGCATTTCGCGGGCTCCCACAACACAACCGCTGTCGA
GGACAAATACTCGCGGAAAGTCTACTACAAAGTCGCGGCTTCGATTAAGA
TCCGCAGATTCGTCCCGTGCCTCAACCAGTGCCAGTCCCTGCGGGGGATC
AGGCTGATATTCCAGAATACTTTCCTCGCTTCCTAAAAACACATATCCAT
AGAACTTCAGGACGTCGAGCTTACACATGGTACAGGTTCCATGCTCTATA
AGCCACGGATCTATGCAGTTTTTATGGAACTCGTGCTTGCACGGCAATAT
CCGTATGGTGTCCGTGGGCTTATAGGCTTCGATGCATATAGCACAGCAGT
CGCTATCCAAGTCCTTTTCATCGCTGAATTTTCCGGTTTTTGTTGGAATC
TTCATGATAGCCTTTTTGGTAACAGAGCAGAGATTGCGCGATTGTTGGTC
CTTCGCCTGCATGTAACGGAACCTCTGAATATAGTAGAAGATGAGCCAAA
CCAGAGAAATAATCATCAAAACAATAAATGAAATCGACACAAACAGCACT
GATGTTCTATTTAAGCTGCTAATGGTGCGAACACCTCGTCTTCCCTCGAT
GATCGAAATAGTTACATTATAGCCCTTATCAAGAG
MXO01336.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2679-PB | 1386 | gol-RB | 617..1380 | 785..22 | 3770 | 99.7 | Minus |
| CG2679-PA | 861 | gol-RA | 92..537 | 785..340 | 2180 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gol-RB | 2583 | CG2679-RB | 1175..1938 | 785..22 | 3790 | 99.7 | Minus |
| gol-RD | 2520 | CG2679-RD | 1175..1932 | 785..28 | 3760 | 99.7 | Minus |
| gol-RE | 3725 | CG2679-RE | 1175..1620 | 785..340 | 2200 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 25073272..25073590 | 22..340 | 1595 | 100 | Plus |
| 2R | 25286936 | 2R | 25075396..25075549 | 436..589 | 770 | 100 | Plus |
| 2R | 25286936 | 2R | 25075605..25075725 | 589..709 | 605 | 100 | Plus |
| 2R | 25286936 | 2R | 25075242..25075338 | 340..436 | 455 | 97.9 | Plus |
| 2R | 25286936 | 2R | 25077174..25077252 | 707..785 | 395 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:40:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X-element | 4740 | X-element ROXELEMENT 4740bp | 2291..2352 | 653..592 | 112 | 64.5 | Minus |
MXO01336.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:29 Download gff for
MXO01336.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2679-PB | 617..1386 | 16..785 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:29 Download gff for
MXO01336.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gol-RB | 1175..1945 | 15..785 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:25 Download gff for
MXO01336.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gol-RB | 1175..1945 | 15..785 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:25 Download gff for
MXO01336.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 25073265..25073589 | 15..339 | 99 | <- | Plus |
| 2R | 25075242..25075338 | 340..436 | 97 | <- | Plus |
| 2R | 25075397..25075548 | 437..588 | 100 | <- | Plus |
| 2R | 25075605..25075722 | 589..706 | 100 | <- | Plus |
| 2R | 25077174..25077252 | 707..785 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:29 Download gff for
MXO01336.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20960788..20961112 | 15..339 | 99 | <- | Plus |
| arm_2R | 20962765..20962861 | 340..436 | 97 | <- | Plus |
| arm_2R | 20962920..20963071 | 437..588 | 100 | <- | Plus |
| arm_2R | 20963128..20963245 | 589..706 | 100 | <- | Plus |
| arm_2R | 20964697..20964775 | 707..785 | 100 | | Plus |
MXO01336.5prime Sequence
821 bp (805 high quality bases) assembled on 2007-03-15
> MXO01336.5prime
CAGTCGACATGTATATACGGAAAACCCTCCTACTGGCTTGCCTTGTTTTG
CTGTTCGGGGGACTCCCGCCTCTCACCTTCCCTGCAACGACCACTACCTT
AGTGGCGGCCATGTCCATCGCAAATCAGGACTTGGAGCGCTACTTTCGAC
CAGGCAACGGCACTCACAGCTTCTCCGGCATGGAAGATCGTATTGCCGTG
GACGTCTATAACTACGCCTTTCTTAACTGGTCATACGTAGAGCACGGTAA
CATGCTGTGCAACATGGAATTCGCCCAAGAACAGGCCCGTTACGGAGAGG
GCAAGGTGTTGAACGTAACGGGACGGTTAATTCACATCACCGCCACGGAC
AACTTTAGTGACGATTACGCGTGCACGCCGTACATCCTAGGAACCTTGGG
AGCACCCATACCAGATAAAGGGGAGACATGGATTGCATTGGTGCGACGGG
GCCGCTGCACCTTTGAGGAAAAAGTTAAACATGTCTACCAGCAAAATGCT
GCCGGTGTTATTATTTATAACGACAAGCAAGTAATGCAGCTGGAGAAGAT
GCAGATCAAGGGCAAAACAAGAAACATAGCCGCCGTTATAACTTATCAGA
ACATTGGGCAAGACCTGTCTTTGACTCTTGATAAGGGCTATAATGTAACT
ATTTCGATCATCGAGGGAAGACGAGGTGTTCGCACCATTAGCAGCTTAAA
TAGAACATCAGTGCTGTTTGTGTCGATTTCATTTATTGTTTTGATGATTA
TTTCTCTGGTTTGGCTCATCTTCTACTATATTCAGAGGTTCCGTTACATG
CAGGCGAAGGACCAACAATCG
MXO01336.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2679-PB | 1386 | gol-RB | 1..813 | 9..821 | 4015 | 99.7 | Plus |
| CG2679-PA | 861 | gol-RA | 1..288 | 534..821 | 1440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gol-RE | 3725 | CG2679-RE | 559..1371 | 9..821 | 4035 | 99.8 | Plus |
| gol-RD | 2520 | CG2679-RD | 559..1371 | 9..821 | 4035 | 99.8 | Plus |
| gol-RC | 3193 | CG2679-RC | 559..1371 | 9..821 | 4035 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 25077369..25077931 | 571..9 | 2785 | 99.6 | Minus |
| 2R | 25286936 | 2R | 25077174..25077306 | 703..571 | 665 | 100 | Minus |
| 2R | 25286936 | 2R | 25075605..25075725 | 821..701 | 605 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 21:23:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X-element | 4740 | X-element ROXELEMENT 4740bp | 2291..2352 | 757..818 | 112 | 64.5 | Plus |
MXO01336.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:30 Download gff for
MXO01336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2679-PB | 1..813 | 9..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:30:28 Download gff for
MXO01336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gol-RC | 555..1371 | 1..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:58 Download gff for
MXO01336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gol-RC | 555..1371 | 1..821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:58 Download gff for
MXO01336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 25075605..25075722 | 704..821 | 100 | <- | Minus |
| 2R | 25077174..25077306 | 571..703 | 100 | <- | Minus |
| 2R | 25077370..25077935 | 1..570 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:30:28 Download gff for
MXO01336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20963128..20963245 | 704..821 | 100 | <- | Minus |
| arm_2R | 20964697..20964829 | 571..703 | 100 | <- | Minus |
| arm_2R | 20964893..20965458 | 1..570 | 98 | | Minus |
