MXO01337.3prime Sequence
844 bp (723 high quality bases) assembled on 2007-03-15
> MXO01337.3prime
ATGGTCTAGAAAGCTTGCCCCACTGCCCTGCATACTGTCATCGCTCTCCA
GGTAGGTGACGTAGGAGTCGGTGCTGTCCGGATGGTGGTGCGAGGTGATC
CCGGAGTCCAAACTGCTGCCTCCGGGCTGCTGGTTCGGCTGCTGGTTCTG
ATGGTTGTGCGGTCCGCCGGGGGGCGGGGGGTGCTGGTGGGGAGGTCCTT
GCGCCGGATGCGAGTGCGGATGCGGCGGCAGAATGGGCATCCCGTTCAGG
TCGTAGCCGTGCATCTGATTGACCAACTGCTGAAATGCGGGCGTGTGGGT
ATTGATCGCTCCATTGCTGTCGAGATCGGCGTGAAGGGCGAAGTCGCTTA
AGGCTTTCCATGGCGGTTGATATGTCTGTTCTTCCCCCCCCCGCAGATTC
AGTGGGGAGTCATGCAAAAAAGGGGAACTGGCGATCATGGGGATGCCCTG
CATGGCGCCGTAGCCCAGCTTGCGACCCTCCTTCTCCTGCTGCATTTGCA
GCTTCATCTGAATGGTCTTCTTCTTGTCCTTGCAGCGCTTGTTCTGGAAC
CATACTCGGATGACTCGCGGCGACAGGCTCGTCATCTCCACCAGCTGCTC
CTTCATGAGCGCATCAGGTCGCGGATTAGCATTGTAGCAGGTTCTGAGCG
TATGCAGCTGTTTCTCATTGAGCACGGTCCGAACCCGCGTGGGCTTGCCA
TCCGATGGCCCCGAGGGTCGCTTGTCCCTAATACTTTTGTGTGAGCCCGA
TTCGCTGCCAGAATCTGAAATTGAACCCAATTCGTTGGAATGGTTGTTAT
TGCTAAGGGTGGTGTTGTTGTTGTTAATACTGGCTAATATTGTT
MXO01337.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10619-PB | 1398 | tup-RB | 582..992 | 832..422 | 1955 | 99 | Minus |
CG10619-PA | 1605 | tup-RA | 582..992 | 832..422 | 1955 | 99 | Minus |
CG10619-PB | 1398 | tup-RB | 1036..1392 | 378..22 | 1785 | 100 | Minus |
CG10619-PA | 1605 | tup-RA | 1036..1378 | 378..36 | 1715 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:08:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tup-RB | 3314 | CG10619-RB | 1037..1858 | 844..22 | 3835 | 97.8 | Minus |
tup-RC | 2270 | CG10619-RC | 1037..1844 | 844..36 | 3765 | 97.8 | Minus |
tup-RA | 3251 | CG10619-RA | 1037..1844 | 844..36 | 3765 | 97.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:08:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18860963..18861208 | 22..267 | 1230 | 100 | Plus |
2L | 23513712 | 2L | 18861682..18861899 | 265..482 | 895 | 94 | Plus |
2L | 23513712 | 2L | 18861955..18862122 | 480..647 | 840 | 100 | Plus |
2L | 23513712 | 2L | 18862180..18862303 | 644..767 | 620 | 100 | Plus |
2L | 23513712 | 2L | 18864095..18864173 | 765..844 | 290 | 93.8 | Plus |
Blast to na_te.dros performed 2014-11-28 22:08:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2368..2438 | 844..776 | 116 | 64.8 | Minus |
MXO01337.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:30 Download gff for
MXO01337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10619-PA | 571..1384 | 29..844 | 97 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:22 Download gff for
MXO01337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tup-RB | 1037..1858 | 22..844 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:40 Download gff for
MXO01337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tup-RB | 1037..1858 | 22..844 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:40 Download gff for
MXO01337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18860963..18861205 | 22..264 | 100 | <- | Plus |
2L | 18861682..18861897 | 265..480 | 93 | <- | Plus |
2L | 18861956..18862118 | 481..643 | 100 | <- | Plus |
2L | 18862180..18862300 | 644..764 | 100 | <- | Plus |
2L | 18864095..18864173 | 765..844 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:22 Download gff for
MXO01337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18861682..18861897 | 265..480 | 93 | <- | Plus |
arm_2L | 18861956..18862118 | 481..643 | 100 | <- | Plus |
arm_2L | 18862180..18862300 | 644..764 | 100 | <- | Plus |
arm_2L | 18864095..18864173 | 765..844 | 93 | | Plus |
arm_2L | 18860963..18861205 | 22..264 | 100 | <- | Plus |
MXO01337.5prime Sequence
874 bp (717 high quality bases) assembled on 2007-03-15
> MXO01337.5prime
CAGTCGACATGGTAATGGCAGAGATCCGTGGCCATTTGGCTCACCAGCTA
CCGTTGCACAATCACAACCACAATCAAACTGGATTACAGCCATCGCTGGT
GATGAACCATCACCTGGATTTGGATTGCCATGGACACGATGTGATAAAAA
AACAACGCCTATCTCACTGCGTCGGATGTGGCGGCCAGATCCACGATCAG
TACATCTTGCGCGTTGCCCCCGATCTGGAGTGGCATGCGGCGTGTCTGAA
GTGCCAGGAGTGCAGGCAGTTCCTGGACGAAAGCTGTACGTGTTTTGTGC
GCGATGGCAAGACCTACTGCAAGCGTGATTATGTTAGGTTATTTGGTACA
AAATGTGATAAATGCGGCAACTCCTTCAGCATTTTTGATCCCCCCCCGCG
GGCCAAAACGAAAATCTTTCACATCAAGTGCTTTCGATGCTCCGCGTGTG
CGCGACAATTGCTGCCAGGCGATGAATTCGCGTTACGCGATGCCGGGGCT
TTGTACTGCAAGGAGGATCACGATGTGCTGGAGAAATCGTCGCAGAGCAG
CCTCACTTCTTCGTCGGTGGAGAGCAACAACAATATTAGCAGTAGTAACA
ACAACAACACCAACCTTAGCAATAACAACCATTCCAGCGAATTGGGTTCA
ATGTCAGATTCTGGCAGCGAATCGGGCTCACACAAAAGTATTAGGGACAA
GCGACCCTCGGGGCCATCGGATGGCAAGCCCACGCGGGTTCGGACCGTGC
TCAATGAGAAACAGCTGCATACGCTCAGAAACTGCTACAATGCTAATCCG
CGACCTGATGCGCTCATGAAAGAGCAGCTGGTGGAGATGACGAGCCTGTC
GCCGCGAGTCATCCGAGTATGGTT
MXO01337.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10619-PA | 1605 | tup-RA | 390..866 | 398..874 | 2310 | 99.3 | Plus |
CG10619-PB | 1398 | tup-RB | 390..866 | 398..874 | 2310 | 99.3 | Plus |
CG10619-PA | 1605 | tup-RA | 1..373 | 9..381 | 1815 | 99.4 | Plus |
CG10619-PB | 1398 | tup-RB | 1..373 | 9..381 | 1815 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tup-RC | 2270 | CG10619-RC | 467..1332 | 9..874 | 4075 | 98 | Plus |
tup-RB | 3314 | CG10619-RB | 467..1332 | 9..874 | 4075 | 98 | Plus |
tup-RA | 3251 | CG10619-RA | 467..1332 | 9..874 | 4075 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18865468..18865659 | 339..148 | 960 | 100 | Minus |
2L | 23513712 | 2L | 18864095..18864285 | 657..467 | 955 | 100 | Minus |
2L | 23513712 | 2L | 18880657..18880795 | 147..9 | 665 | 98.6 | Minus |
2L | 23513712 | 2L | 18862180..18862303 | 778..655 | 620 | 100 | Minus |
2L | 23513712 | 2L | 18864392..18864525 | 469..336 | 475 | 90.3 | Minus |
2L | 23513712 | 2L | 18862023..18862122 | 874..775 | 470 | 98 | Minus |
Blast to na_te.dros performed 2014-11-28 19:53:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 2557..2604 | 50..96 | 120 | 75 | Plus |
MXO01337.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:30 Download gff for
MXO01337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10619-PB | 1..866 | 9..874 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:41 Download gff for
MXO01337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tup-RA | 467..1332 | 9..874 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:58 Download gff for
MXO01337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tup-RA | 467..1332 | 9..874 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:58 Download gff for
MXO01337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18862023..18862118 | 779..874 | 97 | <- | Minus |
2L | 18862180..18862300 | 658..778 | 100 | <- | Minus |
2L | 18864095..18864283 | 469..657 | 100 | <- | Minus |
2L | 18864393..18864523 | 338..468 | 90 | <- | Minus |
2L | 18865470..18865659 | 148..337 | 100 | <- | Minus |
2L | 18880657..18880795 | 9..147 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:41 Download gff for
MXO01337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18865470..18865659 | 148..337 | 100 | <- | Minus |
arm_2L | 18880657..18880795 | 9..147 | 98 | | Minus |
arm_2L | 18862023..18862118 | 779..874 | 97 | <- | Minus |
arm_2L | 18862180..18862300 | 658..778 | 100 | <- | Minus |
arm_2L | 18864095..18864283 | 469..657 | 100 | <- | Minus |
arm_2L | 18864393..18864523 | 338..468 | 90 | <- | Minus |