Clone MXO01337 Report

Search the DGRC for MXO01337

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:37
Vector:pMK33-CTAP-BD
Associated Gene/Transcripttup-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01337.3prime Sequence

844 bp (723 high quality bases) assembled on 2007-03-15

> MXO01337.3prime
ATGGTCTAGAAAGCTTGCCCCACTGCCCTGCATACTGTCATCGCTCTCCA
GGTAGGTGACGTAGGAGTCGGTGCTGTCCGGATGGTGGTGCGAGGTGATC
CCGGAGTCCAAACTGCTGCCTCCGGGCTGCTGGTTCGGCTGCTGGTTCTG
ATGGTTGTGCGGTCCGCCGGGGGGCGGGGGGTGCTGGTGGGGAGGTCCTT
GCGCCGGATGCGAGTGCGGATGCGGCGGCAGAATGGGCATCCCGTTCAGG
TCGTAGCCGTGCATCTGATTGACCAACTGCTGAAATGCGGGCGTGTGGGT
ATTGATCGCTCCATTGCTGTCGAGATCGGCGTGAAGGGCGAAGTCGCTTA
AGGCTTTCCATGGCGGTTGATATGTCTGTTCTTCCCCCCCCCGCAGATTC
AGTGGGGAGTCATGCAAAAAAGGGGAACTGGCGATCATGGGGATGCCCTG
CATGGCGCCGTAGCCCAGCTTGCGACCCTCCTTCTCCTGCTGCATTTGCA
GCTTCATCTGAATGGTCTTCTTCTTGTCCTTGCAGCGCTTGTTCTGGAAC
CATACTCGGATGACTCGCGGCGACAGGCTCGTCATCTCCACCAGCTGCTC
CTTCATGAGCGCATCAGGTCGCGGATTAGCATTGTAGCAGGTTCTGAGCG
TATGCAGCTGTTTCTCATTGAGCACGGTCCGAACCCGCGTGGGCTTGCCA
TCCGATGGCCCCGAGGGTCGCTTGTCCCTAATACTTTTGTGTGAGCCCGA
TTCGCTGCCAGAATCTGAAATTGAACCCAATTCGTTGGAATGGTTGTTAT
TGCTAAGGGTGGTGTTGTTGTTGTTAATACTGGCTAATATTGTT

MXO01337.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG10619-PB 1398 tup-RB 582..992 832..422 1955 99 Minus
CG10619-PA 1605 tup-RA 582..992 832..422 1955 99 Minus
CG10619-PB 1398 tup-RB 1036..1392 378..22 1785 100 Minus
CG10619-PA 1605 tup-RA 1036..1378 378..36 1715 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
tup-RB 3314 CG10619-RB 1037..1858 844..22 3835 97.8 Minus
tup-RC 2270 CG10619-RC 1037..1844 844..36 3765 97.8 Minus
tup-RA 3251 CG10619-RA 1037..1844 844..36 3765 97.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:08:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18860963..18861208 22..267 1230 100 Plus
2L 23513712 2L 18861682..18861899 265..482 895 94 Plus
2L 23513712 2L 18861955..18862122 480..647 840 100 Plus
2L 23513712 2L 18862180..18862303 644..767 620 100 Plus
2L 23513712 2L 18864095..18864173 765..844 290 93.8 Plus
Blast to na_te.dros performed 2014-11-28 22:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2368..2438 844..776 116 64.8 Minus

MXO01337.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:30 Download gff for MXO01337.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10619-PA 571..1384 29..844 97   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:22 Download gff for MXO01337.3prime
Subject Subject Range Query Range Percent Splice Strand
tup-RB 1037..1858 22..844 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:40 Download gff for MXO01337.3prime
Subject Subject Range Query Range Percent Splice Strand
tup-RB 1037..1858 22..844 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:40 Download gff for MXO01337.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 18860963..18861205 22..264 100 <- Plus
2L 18861682..18861897 265..480 93 <- Plus
2L 18861956..18862118 481..643 100 <- Plus
2L 18862180..18862300 644..764 100 <- Plus
2L 18864095..18864173 765..844 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:22 Download gff for MXO01337.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18861682..18861897 265..480 93 <- Plus
arm_2L 18861956..18862118 481..643 100 <- Plus
arm_2L 18862180..18862300 644..764 100 <- Plus
arm_2L 18864095..18864173 765..844 93   Plus
arm_2L 18860963..18861205 22..264 100 <- Plus

MXO01337.5prime Sequence

874 bp (717 high quality bases) assembled on 2007-03-15

> MXO01337.5prime
CAGTCGACATGGTAATGGCAGAGATCCGTGGCCATTTGGCTCACCAGCTA
CCGTTGCACAATCACAACCACAATCAAACTGGATTACAGCCATCGCTGGT
GATGAACCATCACCTGGATTTGGATTGCCATGGACACGATGTGATAAAAA
AACAACGCCTATCTCACTGCGTCGGATGTGGCGGCCAGATCCACGATCAG
TACATCTTGCGCGTTGCCCCCGATCTGGAGTGGCATGCGGCGTGTCTGAA
GTGCCAGGAGTGCAGGCAGTTCCTGGACGAAAGCTGTACGTGTTTTGTGC
GCGATGGCAAGACCTACTGCAAGCGTGATTATGTTAGGTTATTTGGTACA
AAATGTGATAAATGCGGCAACTCCTTCAGCATTTTTGATCCCCCCCCGCG
GGCCAAAACGAAAATCTTTCACATCAAGTGCTTTCGATGCTCCGCGTGTG
CGCGACAATTGCTGCCAGGCGATGAATTCGCGTTACGCGATGCCGGGGCT
TTGTACTGCAAGGAGGATCACGATGTGCTGGAGAAATCGTCGCAGAGCAG
CCTCACTTCTTCGTCGGTGGAGAGCAACAACAATATTAGCAGTAGTAACA
ACAACAACACCAACCTTAGCAATAACAACCATTCCAGCGAATTGGGTTCA
ATGTCAGATTCTGGCAGCGAATCGGGCTCACACAAAAGTATTAGGGACAA
GCGACCCTCGGGGCCATCGGATGGCAAGCCCACGCGGGTTCGGACCGTGC
TCAATGAGAAACAGCTGCATACGCTCAGAAACTGCTACAATGCTAATCCG
CGACCTGATGCGCTCATGAAAGAGCAGCTGGTGGAGATGACGAGCCTGTC
GCCGCGAGTCATCCGAGTATGGTT

MXO01337.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG10619-PA 1605 tup-RA 390..866 398..874 2310 99.3 Plus
CG10619-PB 1398 tup-RB 390..866 398..874 2310 99.3 Plus
CG10619-PA 1605 tup-RA 1..373 9..381 1815 99.4 Plus
CG10619-PB 1398 tup-RB 1..373 9..381 1815 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
tup-RC 2270 CG10619-RC 467..1332 9..874 4075 98 Plus
tup-RB 3314 CG10619-RB 467..1332 9..874 4075 98 Plus
tup-RA 3251 CG10619-RA 467..1332 9..874 4075 98 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18865468..18865659 339..148 960 100 Minus
2L 23513712 2L 18864095..18864285 657..467 955 100 Minus
2L 23513712 2L 18880657..18880795 147..9 665 98.6 Minus
2L 23513712 2L 18862180..18862303 778..655 620 100 Minus
2L 23513712 2L 18864392..18864525 469..336 475 90.3 Minus
2L 23513712 2L 18862023..18862122 874..775 470 98 Minus
Blast to na_te.dros performed 2014-11-28 19:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 2557..2604 50..96 120 75 Plus

MXO01337.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:30 Download gff for MXO01337.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10619-PB 1..866 9..874 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:41 Download gff for MXO01337.5prime
Subject Subject Range Query Range Percent Splice Strand
tup-RA 467..1332 9..874 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:58 Download gff for MXO01337.5prime
Subject Subject Range Query Range Percent Splice Strand
tup-RA 467..1332 9..874 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:58 Download gff for MXO01337.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18862023..18862118 779..874 97 <- Minus
2L 18862180..18862300 658..778 100 <- Minus
2L 18864095..18864283 469..657 100 <- Minus
2L 18864393..18864523 338..468 90 <- Minus
2L 18865470..18865659 148..337 100 <- Minus
2L 18880657..18880795 9..147 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:41 Download gff for MXO01337.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18865470..18865659 148..337 100 <- Minus
arm_2L 18880657..18880795 9..147 98   Minus
arm_2L 18862023..18862118 779..874 97 <- Minus
arm_2L 18862180..18862300 658..778 100 <- Minus
arm_2L 18864095..18864283 469..657 100 <- Minus
arm_2L 18864393..18864523 338..468 90 <- Minus