MXO01339.3prime Sequence
859 bp (784 high quality bases) assembled on 2007-03-15
> MXO01339.3prime
ATGGTCTAGAAAGCTTGCACCCGGGCAGTCGCTTGCTGGCCAGCTCCAAC
TGCAGCTTCTGCAGCGCCAGTGTCTTGTTGATCTCCACTAGGTCGCGACT
GTGCTTTGCCGCCTGCAACTGCACCTCCAGGATCTTCATGCGCATCATGT
GCTCCTTGCTCTGCATCTCCATGAACATGCGCAGCTCAAAGTTGTTGTTG
TTGCTGCTGCTGCTGTTGGCATTGGTGCTGACTGCCGTTCCCGGCATGGT
CAATCCATTGCTGCTGCCGGACCGCTCTAGGGCCTGCGAGTCCGAGGATG
CTGGCACTGATGGGGCCAGGACTGGTGCCTGATCCTCGCTGCCCAACATG
CTACCACTGCTGGTGCGCTGTCTCTTAGTTTTCCCCCCCCCGCTGTCCTC
GTCGTCCTCGTTGATAAAAATATTGTTGTTGTTGTTATTGTGCTGGTGAT
GCATGGCGACCTGGGCCTGTGCCTGGTGCTGGTGAATGGCGGCCGCTGCC
GCTGCTGCTGCACTGGGAAATTGGCCAGAACGGAGGGCATTCAGTGCCTC
CAGCGTGGCGGATATGTTGTTCATGTTGAAGTTGGCCTGGAAGCCGGACA
TGTCACCTCCTCCGGCCATATAGGCACCGCTCGAGTCCAGGACATTAGAT
GTGGAAATCGTGGCGGGACTCTCGGCCTCGTGGATCCCGTTGCGACTGAT
GCTGTGATTAGGCGACACACTGAGACGCTCGCCGCTGCCAAGGATGTCGC
TCTGGTTGAGGTGGTGATGGTTGAAGGTCTCGTTGAAGGTCTCGTTGTTC
TCCTCCTCCTTGATGCCACATCCCACAGTTCCTGCGGCGGGGTGCGGCTG
TCATCCATG
MXO01339.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5393-PB | 1470 | apt-RB | 672..1066 | 815..421 | 1975 | 100 | Minus |
CG5393-PD | 1452 | apt-RD | 654..1048 | 815..421 | 1975 | 100 | Minus |
CG5393-PE | 1410 | apt-RE | 612..1006 | 815..421 | 1975 | 100 | Minus |
CG5393-PC | 1452 | apt-RC | 654..1048 | 815..421 | 1975 | 100 | Minus |
CG5393-PA | 1452 | apt-RA | 654..1048 | 815..421 | 1975 | 100 | Minus |
CG5393-PB | 1470 | apt-RB | 1109..1464 | 378..23 | 1780 | 100 | Minus |
CG5393-PD | 1452 | apt-RD | 1091..1446 | 378..23 | 1780 | 100 | Minus |
CG5393-PE | 1410 | apt-RE | 1049..1404 | 378..23 | 1780 | 100 | Minus |
CG5393-PC | 1452 | apt-RC | 1091..1446 | 378..23 | 1780 | 100 | Minus |
CG5393-PA | 1452 | apt-RA | 1091..1446 | 378..23 | 1780 | 100 | Minus |
CG5393-PB | 1470 | apt-RB | 627..670 | 859..816 | 170 | 95.4 | Minus |
CG5393-PD | 1452 | apt-RD | 609..652 | 859..816 | 170 | 95.4 | Minus |
CG5393-PE | 1410 | apt-RE | 567..610 | 859..816 | 170 | 95.4 | Minus |
CG5393-PC | 1452 | apt-RC | 609..652 | 859..816 | 170 | 95.4 | Minus |
CG5393-PA | 1452 | apt-RA | 609..652 | 859..816 | 170 | 95.4 | Minus |
CG2278-PA | 1803 | CG2278-RA | 1710..1738 | 219..191 | 145 | 100 | Minus |
CG10543-PB | 2670 | CG10543-RB | 2217..2245 | 219..191 | 145 | 100 | Minus |
CG10543-PC | 3075 | CG10543-RC | 2622..2650 | 219..191 | 145 | 100 | Minus |
CG10543-PA | 4905 | CG10543-RA | 4452..4480 | 219..191 | 145 | 100 | Minus |
CG10107-PA | 5502 | CG10107-RA | 265..292 | 218..191 | 140 | 100 | Minus |
CG10107-PC | 5502 | CG10107-RC | 265..292 | 218..191 | 140 | 100 | Minus |
CG33541-PA | 561 | CG33541-RA | 184..211 | 218..191 | 140 | 100 | Minus |
CG33261-PI | 1704 | Trl-RI | 1402..1429 | 218..191 | 140 | 100 | Minus |
CG33261-PA | 1749 | Trl-RA | 1402..1429 | 218..191 | 140 | 100 | Minus |
CG33261-PF | 1749 | Trl-RF | 1402..1429 | 218..191 | 140 | 100 | Minus |
CG17888-PD | 1944 | Pdp1-RD | 126..153 | 218..191 | 140 | 100 | Minus |
CG17762-PD | 4413 | tomosyn-RD | 2158..2185 | 218..191 | 140 | 100 | Minus |
CG32296-PA | 4422 | Mrtf-RA | 2512..2539 | 218..191 | 140 | 100 | Minus |
CG6964-PA | 5901 | Gug-RA | 3370..3397 | 218..191 | 140 | 100 | Minus |
CG6964-PB | 5958 | Gug-RB | 3370..3397 | 218..191 | 140 | 100 | Minus |
CG6964-PD | 5958 | Gug-RD | 3370..3397 | 218..191 | 140 | 100 | Minus |
CG6964-PC | 5967 | Gug-RC | 3370..3397 | 218..191 | 140 | 100 | Minus |
CG10107-PA | 5502 | CG10107-RA | 243..269 | 219..193 | 135 | 100 | Minus |
CG10107-PC | 5502 | CG10107-RC | 243..269 | 219..193 | 135 | 100 | Minus |
CG5151-PA | 1482 | CG5151-RA | 372..398 | 218..192 | 135 | 100 | Minus |
CG5488-PA | 1938 | B-H2-RA | 918..944 | 218..192 | 135 | 100 | Minus |
CG5151-PB | 2088 | CG5151-RB | 978..1004 | 218..192 | 135 | 100 | Minus |
CG4374-PA | 2577 | CG4374-RA | 1356..1382 | 219..193 | 135 | 100 | Minus |
CG7391-PF | 2886 | Clk-RF | 2677..2703 | 218..192 | 135 | 100 | Minus |
CG7391-PB | 3072 | Clk-RB | 2863..2889 | 218..192 | 135 | 100 | Minus |
CG7391-PA | 3072 | Clk-RA | 2863..2889 | 218..192 | 135 | 100 | Minus |
CG7391-PC | 3084 | Clk-RC | 2875..2901 | 218..192 | 135 | 100 | Minus |
CG7391-PD | 3084 | Clk-RD | 2875..2901 | 218..192 | 135 | 100 | Minus |
CG32133-PA | 6885 | CG32133-RA | 4975..5001 | 218..192 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
apt-RF | 2655 | CG5393-RF | 813..1650 | 859..23 | 3910 | 97.9 | Minus |
apt-RA | 2827 | CG5393-RA | 985..1822 | 859..23 | 3910 | 97.9 | Minus |
apt-RC | 2783 | CG5393-RC | 941..1778 | 859..23 | 3910 | 97.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23597693..23598521 | 850..23 | 3840 | 97.8 | Minus |
Blast to na_te.dros performed 2014-11-28 22:02:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2655 | 510..191 | 214 | 56.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2477 | 317..147 | 172 | 61.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6797 | 270..191 | 167 | 71.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6847..6896 | 241..191 | 162 | 82.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2781..2915 | 243..106 | 158 | 61.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6776 | 243..191 | 154 | 79.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2288..2521 | 392..148 | 150 | 58.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6744..6923 | 376..194 | 149 | 57.8 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1082..1159 | 266..189 | 146 | 68.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6851 | 269..191 | 144 | 68.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2344..2391 | 239..191 | 143 | 79.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6779 | 239..191 | 143 | 79.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1528..1578 | 239..191 | 142 | 78.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2349 | 230..191 | 139 | 87.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6818 | 291..191 | 139 | 63.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1530..1581 | 243..191 | 136 | 75.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2949..2993 | 230..186 | 135 | 77.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2375 | 239..189 | 134 | 75.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2476..2523 | 239..191 | 134 | 77.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6821 | 239..191 | 134 | 77.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6864 | 342..196 | 133 | 61.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6833 | 269..191 | 133 | 67.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6761 | 230..191 | 128 | 80 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2403 | 266..191 | 126 | 65.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6755 | 226..191 | 126 | 83.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6782 | 239..191 | 125 | 75.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5637..5677 | 230..190 | 124 | 78 | Minus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3278..3318 | 231..191 | 124 | 78 | Minus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 949..1015 | 247..187 | 123 | 70.1 | Minus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3285..3333 | 230..181 | 121 | 74 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1061..1133 | 266..191 | 120 | 67.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2376 | 230..191 | 119 | 77.5 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1053..1106 | 245..191 | 119 | 70.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2415 | 243..191 | 117 | 70.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1501..1557 | 250..191 | 113 | 68.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2343 | 265..191 | 113 | 65.3 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1054..1088 | 225..191 | 112 | 80 | Minus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7939..7982 | 234..191 | 112 | 72.7 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 9383..9426 | 234..191 | 112 | 72.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6815..6864 | 243..193 | 108 | 70.6 | Minus |
MXO01339.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:31 Download gff for
MXO01339.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5393-PB | 627..1470 | 18..859 | 97 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:36 Download gff for
MXO01339.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
apt-RC | 941..1778 | 23..859 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:08 Download gff for
MXO01339.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
apt-RC | 941..1778 | 23..859 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:08 Download gff for
MXO01339.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23597693..23598521 | 23..850 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:36 Download gff for
MXO01339.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19485216..19486044 | 23..850 | 97 | | Minus |
MXO01339.5prime Sequence
883 bp (670 high quality bases) assembled on 2007-03-15
> MXO01339.5prime
CAGTCGACATGGTCAANAAACAGTACCCCGCCACCGATCTGGAGGCTTTT
ATGAAGATTGCCGCCAACTGGCAAAATTCCAATCACAACTTGCTGGAGGG
CGCCGACATAAAGACGGAAATGACACAGTACATGAACAGTCCTTCCATGA
ACATGTACAAGAAGAGGGAACGCACCCAGAACTGGAACCACCAGGAGAAG
AAATACCTACTCGATCTGTGTCGCAAGGACATGCGCATTATCGAGAACAA
GAGATTGGATGCCGGTCTGACCGCCGTGAAGAACAAGGCATGGAAGATTA
TCCACCAGAAGTTCTCCAATCAGTTTGGCACCGATCGCACCTGCAATCGC
CTGAAGGAACAGTGGCGTCGCATGAAGGCATGTATTTTCTCCCCCCCCCC
TGCACTACAATAATCGCCTGGCCAAAAAAAGAGCAGAGGTGGCCGATCGC
AAGAAGCCATCTCCGTTCACCTTCGAGGTGTGGGATTTCATGCAGGAGGC
GAAGAAGGCATGCAAATCGGAGGCCCTGGATGGCATTGATTACTCTAAGA
TTCCACTGGCCTTGGAGGAGGGTTTTGAGTATCGTGAGGATTACAAATTC
AATCCCGAAGACCACGACATGGATGACAGCCGCACACCGCCGCAGGAACT
GTGCGATGTGGACATCAAGGAGGAGGAGAACAACGAGACCTTCAACGAGA
CCTTCAACCATCACCACCTCAACCAGAGCGACATCCTTGGCAGCGGCGAG
CGTCTCAGTGTGTCGCCTAATCACAGCATCAGTCGCAACGGGATCCACGA
GGCCGAGAGTCCCGCCACGATTTTCACATCTAATGTCCTGAACTCGAGCG
GTGCCTATATGGCCGGAGGAGGTGACATGTCCG
MXO01339.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5393-PB | 1470 | apt-RB | 440..892 | 431..883 | 2215 | 99.5 | Plus |
CG5393-PD | 1452 | apt-RD | 422..874 | 431..883 | 2215 | 99.5 | Plus |
CG5393-PC | 1452 | apt-RC | 422..874 | 431..883 | 2215 | 99.5 | Plus |
CG5393-PA | 1452 | apt-RA | 422..874 | 431..883 | 2215 | 99.5 | Plus |
CG5393-PE | 1410 | apt-RE | 380..832 | 431..883 | 2215 | 99.5 | Plus |
CG5393-PB | 1470 | apt-RB | 40..394 | 30..384 | 1750 | 99.7 | Plus |
CG5393-PD | 1452 | apt-RD | 22..376 | 30..384 | 1750 | 99.7 | Plus |
CG5393-PC | 1452 | apt-RC | 22..376 | 30..384 | 1750 | 99.7 | Plus |
CG5393-PA | 1452 | apt-RA | 22..376 | 30..384 | 1750 | 99.7 | Plus |
CG5393-PE | 1410 | apt-RE | 1..334 | 51..384 | 1645 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
apt-RA | 2827 | CG5393-RA | 377..1250 | 9..883 | 3994 | 97.1 | Plus |
apt-RC | 2783 | CG5393-RC | 333..1206 | 9..883 | 3994 | 97.1 | Plus |
apt-RD | 2762 | CG5393-RD | 312..1185 | 9..883 | 3994 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23597059..23597320 | 117..378 | 1310 | 100 | Plus |
2R | 25286936 | 2R | 23597693..23597949 | 627..883 | 1255 | 99.2 | Plus |
2R | 25286936 | 2R | 23597403..23597630 | 399..626 | 1035 | 96.9 | Plus |
2R | 25286936 | 2R | 23596891..23596997 | 11..117 | 464 | 95.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:23:15 has no hits.
MXO01339.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:32 Download gff for
MXO01339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5393-PD | 1..874 | 9..883 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:30:38 Download gff for
MXO01339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
apt-RD | 349..1222 | 9..883 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:05 Download gff for
MXO01339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
apt-RD | 312..1185 | 9..883 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:05 Download gff for
MXO01339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23596889..23596997 | 8..117 | 94 | -> | Plus |
2R | 23597060..23597320 | 118..378 | 100 | == | Plus |
2R | 23597408..23597630 | 404..626 | 97 | -> | Plus |
2R | 23597693..23597949 | 627..883 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:30:38 Download gff for
MXO01339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19484412..19484520 | 8..117 | 94 | -> | Plus |
arm_2R | 19484583..19484843 | 118..378 | 100 | == | Plus |
arm_2R | 19484931..19485153 | 404..626 | 97 | -> | Plus |
arm_2R | 19485216..19485472 | 627..883 | 99 | | Plus |