Clone MXO01339 Report

Search the DGRC for MXO01339

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:39
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptapt-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01339.3prime Sequence

859 bp (784 high quality bases) assembled on 2007-03-15

> MXO01339.3prime
ATGGTCTAGAAAGCTTGCACCCGGGCAGTCGCTTGCTGGCCAGCTCCAAC
TGCAGCTTCTGCAGCGCCAGTGTCTTGTTGATCTCCACTAGGTCGCGACT
GTGCTTTGCCGCCTGCAACTGCACCTCCAGGATCTTCATGCGCATCATGT
GCTCCTTGCTCTGCATCTCCATGAACATGCGCAGCTCAAAGTTGTTGTTG
TTGCTGCTGCTGCTGTTGGCATTGGTGCTGACTGCCGTTCCCGGCATGGT
CAATCCATTGCTGCTGCCGGACCGCTCTAGGGCCTGCGAGTCCGAGGATG
CTGGCACTGATGGGGCCAGGACTGGTGCCTGATCCTCGCTGCCCAACATG
CTACCACTGCTGGTGCGCTGTCTCTTAGTTTTCCCCCCCCCGCTGTCCTC
GTCGTCCTCGTTGATAAAAATATTGTTGTTGTTGTTATTGTGCTGGTGAT
GCATGGCGACCTGGGCCTGTGCCTGGTGCTGGTGAATGGCGGCCGCTGCC
GCTGCTGCTGCACTGGGAAATTGGCCAGAACGGAGGGCATTCAGTGCCTC
CAGCGTGGCGGATATGTTGTTCATGTTGAAGTTGGCCTGGAAGCCGGACA
TGTCACCTCCTCCGGCCATATAGGCACCGCTCGAGTCCAGGACATTAGAT
GTGGAAATCGTGGCGGGACTCTCGGCCTCGTGGATCCCGTTGCGACTGAT
GCTGTGATTAGGCGACACACTGAGACGCTCGCCGCTGCCAAGGATGTCGC
TCTGGTTGAGGTGGTGATGGTTGAAGGTCTCGTTGAAGGTCTCGTTGTTC
TCCTCCTCCTTGATGCCACATCCCACAGTTCCTGCGGCGGGGTGCGGCTG
TCATCCATG

MXO01339.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5393-PB 1470 apt-RB 672..1066 815..421 1975 100 Minus
CG5393-PD 1452 apt-RD 654..1048 815..421 1975 100 Minus
CG5393-PE 1410 apt-RE 612..1006 815..421 1975 100 Minus
CG5393-PC 1452 apt-RC 654..1048 815..421 1975 100 Minus
CG5393-PA 1452 apt-RA 654..1048 815..421 1975 100 Minus
CG5393-PB 1470 apt-RB 1109..1464 378..23 1780 100 Minus
CG5393-PD 1452 apt-RD 1091..1446 378..23 1780 100 Minus
CG5393-PE 1410 apt-RE 1049..1404 378..23 1780 100 Minus
CG5393-PC 1452 apt-RC 1091..1446 378..23 1780 100 Minus
CG5393-PA 1452 apt-RA 1091..1446 378..23 1780 100 Minus
CG5393-PB 1470 apt-RB 627..670 859..816 170 95.4 Minus
CG5393-PD 1452 apt-RD 609..652 859..816 170 95.4 Minus
CG5393-PE 1410 apt-RE 567..610 859..816 170 95.4 Minus
CG5393-PC 1452 apt-RC 609..652 859..816 170 95.4 Minus
CG5393-PA 1452 apt-RA 609..652 859..816 170 95.4 Minus
CG2278-PA 1803 CG2278-RA 1710..1738 219..191 145 100 Minus
CG10543-PB 2670 CG10543-RB 2217..2245 219..191 145 100 Minus
CG10543-PC 3075 CG10543-RC 2622..2650 219..191 145 100 Minus
CG10543-PA 4905 CG10543-RA 4452..4480 219..191 145 100 Minus
CG10107-PA 5502 CG10107-RA 265..292 218..191 140 100 Minus
CG10107-PC 5502 CG10107-RC 265..292 218..191 140 100 Minus
CG33541-PA 561 CG33541-RA 184..211 218..191 140 100 Minus
CG33261-PI 1704 Trl-RI 1402..1429 218..191 140 100 Minus
CG33261-PA 1749 Trl-RA 1402..1429 218..191 140 100 Minus
CG33261-PF 1749 Trl-RF 1402..1429 218..191 140 100 Minus
CG17888-PD 1944 Pdp1-RD 126..153 218..191 140 100 Minus
CG17762-PD 4413 tomosyn-RD 2158..2185 218..191 140 100 Minus
CG32296-PA 4422 Mrtf-RA 2512..2539 218..191 140 100 Minus
CG6964-PA 5901 Gug-RA 3370..3397 218..191 140 100 Minus
CG6964-PB 5958 Gug-RB 3370..3397 218..191 140 100 Minus
CG6964-PD 5958 Gug-RD 3370..3397 218..191 140 100 Minus
CG6964-PC 5967 Gug-RC 3370..3397 218..191 140 100 Minus
CG10107-PA 5502 CG10107-RA 243..269 219..193 135 100 Minus
CG10107-PC 5502 CG10107-RC 243..269 219..193 135 100 Minus
CG5151-PA 1482 CG5151-RA 372..398 218..192 135 100 Minus
CG5488-PA 1938 B-H2-RA 918..944 218..192 135 100 Minus
CG5151-PB 2088 CG5151-RB 978..1004 218..192 135 100 Minus
CG4374-PA 2577 CG4374-RA 1356..1382 219..193 135 100 Minus
CG7391-PF 2886 Clk-RF 2677..2703 218..192 135 100 Minus
CG7391-PB 3072 Clk-RB 2863..2889 218..192 135 100 Minus
CG7391-PA 3072 Clk-RA 2863..2889 218..192 135 100 Minus
CG7391-PC 3084 Clk-RC 2875..2901 218..192 135 100 Minus
CG7391-PD 3084 Clk-RD 2875..2901 218..192 135 100 Minus
CG32133-PA 6885 CG32133-RA 4975..5001 218..192 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
apt-RF 2655 CG5393-RF 813..1650 859..23 3910 97.9 Minus
apt-RA 2827 CG5393-RA 985..1822 859..23 3910 97.9 Minus
apt-RC 2783 CG5393-RC 941..1778 859..23 3910 97.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23597693..23598521 850..23 3840 97.8 Minus
Blast to na_te.dros performed 2014-11-28 22:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2343..2655 510..191 214 56.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2477 317..147 172 61.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6797 270..191 167 71.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6847..6896 241..191 162 82.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2781..2915 243..106 158 61.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6776 243..191 154 79.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2288..2521 392..148 150 58.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6744..6923 376..194 149 57.8 Minus
roo 9092 roo DM_ROO 9092bp 1082..1159 266..189 146 68.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6851 269..191 144 68.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2344..2391 239..191 143 79.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6779 239..191 143 79.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1528..1578 239..191 142 78.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2313..2349 230..191 139 87.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6818 291..191 139 63.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1530..1581 243..191 136 75.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2949..2993 230..186 135 77.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2323..2375 239..189 134 75.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2476..2523 239..191 134 77.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6774..6821 239..191 134 77.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6864 342..196 133 61.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6833 269..191 133 67.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6761 230..191 128 80 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2403 266..191 126 65.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6755 226..191 126 83.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6782 239..191 125 75.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 5637..5677 230..190 124 78 Minus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3278..3318 231..191 124 78 Minus
gypsy11 4428 gypsy11 GYPSY11 4428bp 949..1015 247..187 123 70.1 Minus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3285..3333 230..181 121 74 Minus
roo 9092 roo DM_ROO 9092bp 1061..1133 266..191 120 67.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2337..2376 230..191 119 77.5 Minus
roo 9092 roo DM_ROO 9092bp 1053..1106 245..191 119 70.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2361..2415 243..191 117 70.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1501..1557 250..191 113 68.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2273..2343 265..191 113 65.3 Minus
roo 9092 roo DM_ROO 9092bp 1054..1088 225..191 112 80 Minus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7939..7982 234..191 112 72.7 Minus
TART-C 11124 TART-C TARTC 11124bp 9383..9426 234..191 112 72.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6815..6864 243..193 108 70.6 Minus

MXO01339.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:31 Download gff for MXO01339.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5393-PB 627..1470 18..859 97   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:36 Download gff for MXO01339.3prime
Subject Subject Range Query Range Percent Splice Strand
apt-RC 941..1778 23..859 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:08 Download gff for MXO01339.3prime
Subject Subject Range Query Range Percent Splice Strand
apt-RC 941..1778 23..859 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:08 Download gff for MXO01339.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23597693..23598521 23..850 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:36 Download gff for MXO01339.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19485216..19486044 23..850 97   Minus

MXO01339.5prime Sequence

883 bp (670 high quality bases) assembled on 2007-03-15

> MXO01339.5prime
CAGTCGACATGGTCAANAAACAGTACCCCGCCACCGATCTGGAGGCTTTT
ATGAAGATTGCCGCCAACTGGCAAAATTCCAATCACAACTTGCTGGAGGG
CGCCGACATAAAGACGGAAATGACACAGTACATGAACAGTCCTTCCATGA
ACATGTACAAGAAGAGGGAACGCACCCAGAACTGGAACCACCAGGAGAAG
AAATACCTACTCGATCTGTGTCGCAAGGACATGCGCATTATCGAGAACAA
GAGATTGGATGCCGGTCTGACCGCCGTGAAGAACAAGGCATGGAAGATTA
TCCACCAGAAGTTCTCCAATCAGTTTGGCACCGATCGCACCTGCAATCGC
CTGAAGGAACAGTGGCGTCGCATGAAGGCATGTATTTTCTCCCCCCCCCC
TGCACTACAATAATCGCCTGGCCAAAAAAAGAGCAGAGGTGGCCGATCGC
AAGAAGCCATCTCCGTTCACCTTCGAGGTGTGGGATTTCATGCAGGAGGC
GAAGAAGGCATGCAAATCGGAGGCCCTGGATGGCATTGATTACTCTAAGA
TTCCACTGGCCTTGGAGGAGGGTTTTGAGTATCGTGAGGATTACAAATTC
AATCCCGAAGACCACGACATGGATGACAGCCGCACACCGCCGCAGGAACT
GTGCGATGTGGACATCAAGGAGGAGGAGAACAACGAGACCTTCAACGAGA
CCTTCAACCATCACCACCTCAACCAGAGCGACATCCTTGGCAGCGGCGAG
CGTCTCAGTGTGTCGCCTAATCACAGCATCAGTCGCAACGGGATCCACGA
GGCCGAGAGTCCCGCCACGATTTTCACATCTAATGTCCTGAACTCGAGCG
GTGCCTATATGGCCGGAGGAGGTGACATGTCCG

MXO01339.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5393-PB 1470 apt-RB 440..892 431..883 2215 99.5 Plus
CG5393-PD 1452 apt-RD 422..874 431..883 2215 99.5 Plus
CG5393-PC 1452 apt-RC 422..874 431..883 2215 99.5 Plus
CG5393-PA 1452 apt-RA 422..874 431..883 2215 99.5 Plus
CG5393-PE 1410 apt-RE 380..832 431..883 2215 99.5 Plus
CG5393-PB 1470 apt-RB 40..394 30..384 1750 99.7 Plus
CG5393-PD 1452 apt-RD 22..376 30..384 1750 99.7 Plus
CG5393-PC 1452 apt-RC 22..376 30..384 1750 99.7 Plus
CG5393-PA 1452 apt-RA 22..376 30..384 1750 99.7 Plus
CG5393-PE 1410 apt-RE 1..334 51..384 1645 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:16
Subject Length Description Subject Range Query Range Score Percent Strand
apt-RA 2827 CG5393-RA 377..1250 9..883 3994 97.1 Plus
apt-RC 2783 CG5393-RC 333..1206 9..883 3994 97.1 Plus
apt-RD 2762 CG5393-RD 312..1185 9..883 3994 97.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23597059..23597320 117..378 1310 100 Plus
2R 25286936 2R 23597693..23597949 627..883 1255 99.2 Plus
2R 25286936 2R 23597403..23597630 399..626 1035 96.9 Plus
2R 25286936 2R 23596891..23596997 11..117 464 95.3 Plus
Blast to na_te.dros performed on 2014-11-28 21:23:15 has no hits.

MXO01339.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:32 Download gff for MXO01339.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5393-PD 1..874 9..883 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:30:38 Download gff for MXO01339.5prime
Subject Subject Range Query Range Percent Splice Strand
apt-RD 349..1222 9..883 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:05 Download gff for MXO01339.5prime
Subject Subject Range Query Range Percent Splice Strand
apt-RD 312..1185 9..883 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:05 Download gff for MXO01339.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23596889..23596997 8..117 94 -> Plus
2R 23597060..23597320 118..378 100 == Plus
2R 23597408..23597630 404..626 97 -> Plus
2R 23597693..23597949 627..883 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:30:38 Download gff for MXO01339.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19484412..19484520 8..117 94 -> Plus
arm_2R 19484583..19484843 118..378 100 == Plus
arm_2R 19484931..19485153 404..626 97 -> Plus
arm_2R 19485216..19485472 627..883 99   Plus