Clone MXO01340 Report

Search the DGRC for MXO01340

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:40
Vector:pMK33-CTAP-BD
Associated Gene/Transcripther-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01340.3prime Sequence

766 bp (695 high quality bases) assembled on 2007-03-15

> MXO01340.3prime
ATGGTCTAGAAAGCTTGCAGTTTGACTTAACGTGCCCTGTTTAGAGTACA
TGTCCTTGATTATCTGCATGCGAGTCATTCGAGTCGCGCACAGCCAGGAG
TCCTTAATTTGAAATGCCTCGAACTGCTTGCGATCTTCCTTGAAGGGTTT
GTAGTAAATGTCATAGATGATGCGCAGGATGCGTTGCACATTCTCCTGCG
ACGGCTTCTTTGAGTGCTTTGCAAATGTTTGGTTCTTTTGCATCTTTGTG
TACTTGCCATCATCCCACCAATCTGGAAAATCTGTATCTGCATCGCCAGC
TTTAAGGTCCTTCTTGAGTTCCGCTTTGTTACTTATGTGATGTACAGCAT
CCGGCGTACTCCAACTCCAAGCCAGATCTTTCTTCTCCCCCCCCTTTATT
TTAACTGGTTCCTCTCCAAAAAAGATTGGCACAAGAAACTCATCCTGCTG
ATCTTCTTCGGCAAGGGACATGGCCAACTCATCGTCTAATTCGTCCATTT
GCTGCTGGACAGAAATTGAAGTGCTCTTTATGGGCAGCTCCAATTTTGTT
GGAGCTCCCGGCGGTGGATCTATTGACTGGAACCATCGCAACTGGCCATC
AACGTTGACAGCGATGACGTGCTTATCCCGGATGTCTCCATGGAGAATCT
GCGGGTTGCTAATGGTGATGATGGGCGGCTGCTCCTCCTCCTGCAGTTCC
TCGTAAACAAATTCCAAACTTTCCTCGTCGTATTTCATACTGCCTACCAG
GGCTTCTTTTAAAGGA

MXO01340.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG4694-PA 1464 her-RA 1102..1461 378..19 1750 99.4 Minus
CG4694-PA 1464 her-RA 714..1055 766..425 1710 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
her-RB 2378 CG4694-RB 912..1659 766..19 3425 97.2 Minus
her-RA 2070 CG4694-RA 912..1659 766..19 3425 97.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16678643..16678972 348..19 1620 99.4 Minus
2L 23513712 2L 16678318..16678582 612..348 1040 92.8 Minus
2L 23513712 2L 16678096..16678250 766..612 775 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:12:52 has no hits.

MXO01340.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:32 Download gff for MXO01340.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4694-PA 715..1464 16..765 96   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:47 Download gff for MXO01340.3prime
Subject Subject Range Query Range Percent Splice Strand
her-RA 913..1659 19..765 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:33 Download gff for MXO01340.3prime
Subject Subject Range Query Range Percent Splice Strand
her-RA 913..1659 19..765 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:33 Download gff for MXO01340.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16678097..16678249 613..765 100 -> Minus
2L 16678318..16678581 349..612 92 -> Minus
2L 16678643..16678972 19..348 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:47 Download gff for MXO01340.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16678097..16678249 613..765 100 -> Minus
arm_2L 16678318..16678581 349..612 92 -> Minus
arm_2L 16678643..16678972 19..348 99   Minus

MXO01340.5prime Sequence

847 bp (750 high quality bases) assembled on 2007-03-15

> MXO01340.5prime
CAGTCGACATGCTTAGTGCGGATCGGCATTCGGTGGAGGAAGAATATGGA
TCGTGCTCGGCCTGGAAATTCCGTTGCAGCGTGGACAGGTGCCCCTACAG
GACGAACAGACCCTACAATCTGGCGCGTCATGAGGAGTCCCACATTGGTA
TTACGCAGTCCAAGCTATACGGATGCCCCGTTTGCGTTTACAACACCGAC
AAGGCGTCGAACCTGAAGCGGCACGTGTCTATCAAACATCCTGGGTGCAA
AAAGCGCCCTCCGGAAGCGCAGCACAAGGATCGCAATGCCAAGTTGCAGT
GCCTGGTGATGGGATGCAGATACGAGACAAATCTTCCATACGACCTCAAG
CGCCACTTGATGGTGCACAACAATCCGGAGAAGATTTTTCCCCCCCCCCC
CTGCTCCCTTTGCACCTACAAATACAACAGAAAGGCCAATCTCAAGCGGC
ACCACGAGCTACGCCATTCGGGCATAGAGGAGGCCATTCAAACTGCGGAG
GAACTGCGCCAGGAGATGCTGCTGGAGAAGCAAATGCTGAAGGAACATAA
GCTAAAATATCAGATCACAGAGAAACAGGATTTGAAGAATCTAAAGTTGA
AGGACCAAAAGCAGAAGGTGCAAATGCTGAGGGATCAGCAACCGAAACAA
AGGCAAAAGAAAGAACAGTTGCTGGAGGACCAGAGTCCTGTGCTGAATAA
GCAGCTGGAGCACGGAAATATTCCTTTAAAAGAAGCCCTGGTAGGCAGTA
TGAAATACGACGAGGAAAGTTTGGAATTTGTTTACGAGGAACTGCAGGAG
GAGGAGCAGCCGCCCATCATCACCATTAGCAACCCGCAGATTCTCCA

MXO01340.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4694-PA 1464 her-RA 422..839 430..847 2090 100 Plus
CG4694-PA 1464 her-RA 1..376 9..384 1830 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
her-RB 2378 CG4694-RB 199..1037 9..847 3850 97.3 Plus
her-RA 2070 CG4694-RA 199..1037 9..847 3850 97.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16677383..16678221 9..847 3850 97.3 Plus
Blast to na_te.dros performed on 2014-11-28 18:40:18 has no hits.

MXO01340.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:32 Download gff for MXO01340.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4694-PA 1..838 9..846 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:32 Download gff for MXO01340.5prime
Subject Subject Range Query Range Percent Splice Strand
her-RA 199..1036 9..846 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:27 Download gff for MXO01340.5prime
Subject Subject Range Query Range Percent Splice Strand
her-RA 199..1036 9..846 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:27 Download gff for MXO01340.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16677383..16678220 9..846 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:32 Download gff for MXO01340.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16677383..16678220 9..846 97   Plus