MXO01340.3prime Sequence
766 bp (695 high quality bases) assembled on 2007-03-15
> MXO01340.3prime
ATGGTCTAGAAAGCTTGCAGTTTGACTTAACGTGCCCTGTTTAGAGTACA
TGTCCTTGATTATCTGCATGCGAGTCATTCGAGTCGCGCACAGCCAGGAG
TCCTTAATTTGAAATGCCTCGAACTGCTTGCGATCTTCCTTGAAGGGTTT
GTAGTAAATGTCATAGATGATGCGCAGGATGCGTTGCACATTCTCCTGCG
ACGGCTTCTTTGAGTGCTTTGCAAATGTTTGGTTCTTTTGCATCTTTGTG
TACTTGCCATCATCCCACCAATCTGGAAAATCTGTATCTGCATCGCCAGC
TTTAAGGTCCTTCTTGAGTTCCGCTTTGTTACTTATGTGATGTACAGCAT
CCGGCGTACTCCAACTCCAAGCCAGATCTTTCTTCTCCCCCCCCTTTATT
TTAACTGGTTCCTCTCCAAAAAAGATTGGCACAAGAAACTCATCCTGCTG
ATCTTCTTCGGCAAGGGACATGGCCAACTCATCGTCTAATTCGTCCATTT
GCTGCTGGACAGAAATTGAAGTGCTCTTTATGGGCAGCTCCAATTTTGTT
GGAGCTCCCGGCGGTGGATCTATTGACTGGAACCATCGCAACTGGCCATC
AACGTTGACAGCGATGACGTGCTTATCCCGGATGTCTCCATGGAGAATCT
GCGGGTTGCTAATGGTGATGATGGGCGGCTGCTCCTCCTCCTGCAGTTCC
TCGTAAACAAATTCCAAACTTTCCTCGTCGTATTTCATACTGCCTACCAG
GGCTTCTTTTAAAGGA
MXO01340.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4694-PA | 1464 | her-RA | 1102..1461 | 378..19 | 1750 | 99.4 | Minus |
CG4694-PA | 1464 | her-RA | 714..1055 | 766..425 | 1710 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
her-RB | 2378 | CG4694-RB | 912..1659 | 766..19 | 3425 | 97.2 | Minus |
her-RA | 2070 | CG4694-RA | 912..1659 | 766..19 | 3425 | 97.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16678643..16678972 | 348..19 | 1620 | 99.4 | Minus |
2L | 23513712 | 2L | 16678318..16678582 | 612..348 | 1040 | 92.8 | Minus |
2L | 23513712 | 2L | 16678096..16678250 | 766..612 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:12:52 has no hits.
MXO01340.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:32 Download gff for
MXO01340.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4694-PA | 715..1464 | 16..765 | 96 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:47 Download gff for
MXO01340.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
her-RA | 913..1659 | 19..765 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:33 Download gff for
MXO01340.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
her-RA | 913..1659 | 19..765 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:33 Download gff for
MXO01340.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16678097..16678249 | 613..765 | 100 | -> | Minus |
2L | 16678318..16678581 | 349..612 | 92 | -> | Minus |
2L | 16678643..16678972 | 19..348 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:47 Download gff for
MXO01340.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16678097..16678249 | 613..765 | 100 | -> | Minus |
arm_2L | 16678318..16678581 | 349..612 | 92 | -> | Minus |
arm_2L | 16678643..16678972 | 19..348 | 99 | | Minus |
MXO01340.5prime Sequence
847 bp (750 high quality bases) assembled on 2007-03-15
> MXO01340.5prime
CAGTCGACATGCTTAGTGCGGATCGGCATTCGGTGGAGGAAGAATATGGA
TCGTGCTCGGCCTGGAAATTCCGTTGCAGCGTGGACAGGTGCCCCTACAG
GACGAACAGACCCTACAATCTGGCGCGTCATGAGGAGTCCCACATTGGTA
TTACGCAGTCCAAGCTATACGGATGCCCCGTTTGCGTTTACAACACCGAC
AAGGCGTCGAACCTGAAGCGGCACGTGTCTATCAAACATCCTGGGTGCAA
AAAGCGCCCTCCGGAAGCGCAGCACAAGGATCGCAATGCCAAGTTGCAGT
GCCTGGTGATGGGATGCAGATACGAGACAAATCTTCCATACGACCTCAAG
CGCCACTTGATGGTGCACAACAATCCGGAGAAGATTTTTCCCCCCCCCCC
CTGCTCCCTTTGCACCTACAAATACAACAGAAAGGCCAATCTCAAGCGGC
ACCACGAGCTACGCCATTCGGGCATAGAGGAGGCCATTCAAACTGCGGAG
GAACTGCGCCAGGAGATGCTGCTGGAGAAGCAAATGCTGAAGGAACATAA
GCTAAAATATCAGATCACAGAGAAACAGGATTTGAAGAATCTAAAGTTGA
AGGACCAAAAGCAGAAGGTGCAAATGCTGAGGGATCAGCAACCGAAACAA
AGGCAAAAGAAAGAACAGTTGCTGGAGGACCAGAGTCCTGTGCTGAATAA
GCAGCTGGAGCACGGAAATATTCCTTTAAAAGAAGCCCTGGTAGGCAGTA
TGAAATACGACGAGGAAAGTTTGGAATTTGTTTACGAGGAACTGCAGGAG
GAGGAGCAGCCGCCCATCATCACCATTAGCAACCCGCAGATTCTCCA
MXO01340.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4694-PA | 1464 | her-RA | 422..839 | 430..847 | 2090 | 100 | Plus |
CG4694-PA | 1464 | her-RA | 1..376 | 9..384 | 1830 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
her-RB | 2378 | CG4694-RB | 199..1037 | 9..847 | 3850 | 97.3 | Plus |
her-RA | 2070 | CG4694-RA | 199..1037 | 9..847 | 3850 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16677383..16678221 | 9..847 | 3850 | 97.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:40:18 has no hits.
MXO01340.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:32 Download gff for
MXO01340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4694-PA | 1..838 | 9..846 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:32 Download gff for
MXO01340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
her-RA | 199..1036 | 9..846 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:27 Download gff for
MXO01340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
her-RA | 199..1036 | 9..846 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:27 Download gff for
MXO01340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16677383..16678220 | 9..846 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:32 Download gff for
MXO01340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16677383..16678220 | 9..846 | 97 | | Plus |