MXO01342.3prime Sequence
745 bp (744 high quality bases) assembled on 2007-03-15
> MXO01342.3prime
ATGGTCTAGAAAGCTTGCTTCAATCTTGTGGAACTCCTCCATGCATAGCT
TGCAGCTCCAAGAACCCTCTGGTGGAGTCACAAGCGGTGGTGACAGGCAG
TACATATGGTATCCCCGGTCACAATCGTCACAAAATAAAAGTTGATCGTC
ATTATCAGAGGTCCCACAGATGGAGCAGTACTTGCATTCAATGCATTGCC
AACGATAACGTTTTACCGATATAATCATATTTGCCGTGAACTGCAGACAC
GATGGATGACCGGAACGACCACAGTCCGAGCACGATACTAGCTCTTCGGG
CATATTGGTTTTTTTATTTTCTCGTTGATTTCCCAGACAAAAGTCACAAT
AAGGTGATGGTTGCGCTATGTCACGTTCTTTTTTTTCCCCCCCCCTTATT
ANNAGTAGTAAATATAAAAAAAAAAGGGGGTGTTTGNANNGGATGNGNAT
TGNAAANATTTGAGGTTGTNAGGNNNGNGTTTATGGNAANNATTGTTGNT
AGGGGAATTGAGTNATTGGAAGNTNNAGNATNGNTTGAAGTNTTATNGTA
NGAAGAAGATATGTTTGTTGGNAGTATGAGTNNTGANTGTGAATTGTNGT
NATTTATGGGAATAGGNGAAGNTGAGTTGGAATGAGATGNATAGAGNNNA
GTGGTAGNGAAAGNAGTTGNAGTANATGGTGNATGTGNGAAAGNGGNGGN
AGTTGNNGNTGNGGNTGGGGATGTATTTGNANTATTTNNANNGGN
MXO01342.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2682-PA | 1494 | d4-RA | 1131..1488 | 379..22 | 1765 | 99.7 | Minus |
| CG2682-PC | 1488 | d4-RC | 1125..1482 | 379..22 | 1765 | 99.7 | Minus |
| CG2682-PB | 1020 | d4-RB | 657..1014 | 379..22 | 1765 | 99.7 | Minus |
| CG2682-PA | 1494 | d4-RA | 865..976 | 646..535 | 282 | 87.5 | Minus |
| CG2682-PC | 1488 | d4-RC | 859..970 | 646..535 | 282 | 87.5 | Minus |
| CG2682-PB | 1020 | d4-RB | 391..502 | 646..535 | 282 | 87.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| d4-RD | 1764 | CG2682-RD | 973..1687 | 737..22 | 2384 | 86.9 | Minus |
| d4-RB | 1850 | CG2682-RB | 1059..1773 | 737..22 | 2384 | 86.9 | Minus |
| d4-RC | 1761 | CG2682-RC | 970..1684 | 737..22 | 2384 | 86.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5295174..5295888 | 737..22 | 2359 | 86.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:02:34 has no hits.
MXO01342.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:33 Download gff for
MXO01342.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2682-PB | 657..1020 | 15..379 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:38 Download gff for
MXO01342.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| d4-RC | 1327..1693 | 12..379 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:10 Download gff for
MXO01342.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| d4-RC | 1327..1693 | 12..379 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:10 Download gff for
MXO01342.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5295531..5295897 | 12..379 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:38 Download gff for
MXO01342.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1183036..1183402 | 12..379 | 98 | | Minus |
MXO01342.5prime Sequence
659 bp (658 high quality bases) assembled on 2007-03-15
> MXO01342.5prime
TAGTGGAAATGGTTTNNAAATCTGCGCACAAAAAAAGTTTGGTAGTAAAN
ATTGGNAATTTTGAAAAAATTNAGAATTTTTTAAATGANAAGGAAAAGTA
NACCGAGATTGTAGAAAANAGNGAGAATTTNAANATTGGTGTATGGATTG
AAGGTGGATTTGGNATGGNATTCTTNGATGGAAAGAGAGGTGTNGAAAAG
AAANATTGTTTTTTTTTTATGAAAAAAAAANAGGGAATGGNAGGTNTTNG
ANATGGTTAGATATANATTTATNNATNGTNTGGGTGGNGAAAANNAAAAN
GTNAGTATTTATTTAATTAGAATAAAAGTTTTTTATTTTATNAGTATNGN
GAGNANAATTTTGAGGATTGAAAAAATAAAATGTTTTTTCCCCCCCCCCC
CCTANNTTGGTNTGGTGTTGAAAAAAAAAAAGAGGGTGATTTAGTTGAAA
GNGNAGNNATTGTTGTTATGGATGGNAATTNNATGGGAGNATNAGGAGAT
AATGATAGTAAGGATTNANATGNAAANGTNGAAAAAGAATGGTTNNANGA
TGAAATGGANANATNATATTTTNATNATGGNGATGAATTTGAGGATGATT
TTGATTNAGATAANGATTTTGATGAGTNTTANANNAGNNGGGGNAAANGN
AAAAAGTGT
MXO01342.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2682-PC | 1488 | d4-RC | 475..623 | 483..631 | 309 | 85.2 | Plus |
| CG2682-PA | 1494 | d4-RA | 475..623 | 483..631 | 309 | 85.2 | Plus |
| CG2682-PB | 1020 | d4-RB | 1..149 | 483..631 | 309 | 85.2 | Plus |
| CG2682-PC | 1488 | d4-RC | 10..122 | 18..130 | 232 | 86.7 | Plus |
| CG2682-PA | 1494 | d4-RA | 10..122 | 18..130 | 232 | 86.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| d4-RD | 1764 | CG2682-RD | 635..853 | 441..659 | 601 | 80.8 | Plus |
| d4-RB | 1850 | CG2682-RB | 718..936 | 441..659 | 601 | 80.8 | Plus |
| d4-RC | 1761 | CG2682-RC | 635..853 | 441..659 | 601 | 80.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5294799..5294999 | 459..659 | 570 | 81.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:02:38 has no hits.
MXO01342.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 19:15:34 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-05 00:42:41 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 22:57:11 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 22:57:11 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 00:42:41 has no hits.
