MXO01343.3prime Sequence
904 bp (798 high quality bases) assembled on 2007-03-15
> MXO01343.3prime
ATGGTCTAGAAAGCTTGCAACACCACTCTTAGAGTACTTCTTCCAGTAAC
GCTTGACATCGTCGTGGCCATTCTTTTGCACCACCATTGTGCGAGTTCGC
TCATTTTGCCACACCAGCATGTGGATCGACTGGGCGTAGTCTCGTAGCGT
TACGAAATCTGTATGCGAGAGGAACTGATTGTACAGCACGCCTTCGGTGT
AGGTGAAGCGATTTCGCTCTAATTCCCACAGCTTAATTTGATCAACGACT
GTGGGTGGCAGGCAGGATTTAGAGTGAATGGCTGACTCGACCATGCGCAT
ATTGGGATGCGCATACTGCTCCAGATACGAGACAATCTGCTCTGCCGTGA
TACCGCCACGCAACGCCTGGCGCACTGAATCTCGCCCCCCCACGCCCACG
ACGAGATTGGGAAAGCAAAAGAGAAGCTCCGTGAACAGACCTAACACGGC
TACCTGGAGCGGAGAATCAGTGTAGGCATACACTCGGTAGTTCGTCTCCA
CCACAATGTAGCCACAGTCCTGAGTGGCCTCCTCATCCATGGCCACAGAT
GCAGTCGCAGCCGCCTCCTTGCTTGTCACATTCAGAGCCAAACGTGTGGG
ATAGAAGCGTCCCTCCTTACGCTTACGTTGGAAGACCAGTCCAAACTCCC
GTAGATGCTGCAGGAATGTCAGCATCTGACTGTTCATGCCCTCGGAACTG
TAATCCCTGCCCAGCGTTGAAAAACTGAGCTGGAACAACATGGACAAGCA
TTCCGGCAGGCTGATTCCTCTTTCTTCGCACGTGTCCAGGTACTGTAGCA
TAAAATGCCACACCTGAGCTCGCGTGTCCAGCAGCAAGAACTGAAAGCCC
TGCCGGGTTATTGTGATACCGTCTCGTTCATCACGTTTCATGAAATTGGC
GTGC
MXO01343.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7764-PA | 1500 | Tfb2-RA | 612..1096 | 904..420 | 2375 | 99.5 | Minus |
| CG7764-PA | 1500 | Tfb2-RA | 1135..1497 | 381..19 | 1815 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mrn-RA | 1714 | CG7764-RA | 643..1528 | 904..19 | 4250 | 98.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15578955..15579840 | 19..904 | 4250 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:31:43 has no hits.
MXO01343.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:34 Download gff for
MXO01343.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7764-PA | 612..1500 | 18..904 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:12 Download gff for
MXO01343.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrn-RA | 643..1532 | 13..904 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:31 Download gff for
MXO01343.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrn-RA | 643..1532 | 13..904 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:31 Download gff for
MXO01343.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15578951..15579840 | 13..904 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:12 Download gff for
MXO01343.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15572051..15572940 | 13..904 | 98 | | Plus |
MXO01343.5prime Sequence
781 bp (696 high quality bases) assembled on 2007-03-15
> MXO01343.5prime
CAGTCGACATGGCCGACACGAAATCCCGTAGTGGTCGGCATTCGGCTGCC
GGGGGAAGTGGAAACGCCGTCCTGTCGCCCTTGGGGCAGGGTCCTGCGAA
CTTGGAGTGTAAGGACTTTCAGGAGTATCTGCGCACCCGCCAAACGCCAG
AGTCGCTGGAGAAGCTGTACAACTATCCGCCCATTTGTTTGGCCGTTTTT
CGGGAGCTTCCAGAGATAGCCCGGCAGTTTATCATAAGGATACTGTTCGT
GGATCAGCCTGTGCCACAAGCGGTGGTCACATCATGGGGTGCCCAACGTT
GTGCCAAGGAGCAAGCCGAGGCAACCATCTGCCTGACGGCTTTGAACGTC
TGGCGGGTCACAGCCATTCCGGGTGGCCTTTTTTTTTCCCCCCCCCCCCC
CACCTTCAAGAAAAGCATAAAAAAAGAGGTGCTGGGCGGCGGAAAACCTT
GGCCTATGACCAACACGCTGGATAAGGACTCGAAGCCCAGGGACATTGCT
TTTCTGGATACATACGCCATGTCCCGCTGGCGTTGCGTGTTGCACTACAT
GGTCGGCACCGGAAATCGCAATGGCACCGATGCGGAGGCCATTAGTCCGG
ACGCCGTTCGGATTCTGCTGCACGCCAATCTCATGAAACGTGATGAACGA
GACGGTATCACAATAACCCGGCAGGGCTTTCAGTTCCTGCTGCTGGACAC
GCGAGCTCAGGTGTGGCATTTTATGCTACAGTACCTGTACACGTGCGAAG
AAAGAGGAATCAGCCTGCCGGAATGCTTGTC
MXO01343.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7764-PA | 1500 | Tfb2-RA | 1..373 | 9..381 | 1815 | 99.4 | Plus |
| CG7764-PA | 1500 | Tfb2-RA | 422..773 | 430..781 | 1735 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mrn-RA | 1714 | CG7764-RA | 27..804 | 4..781 | 3530 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15579679..15580152 | 781..308 | 2040 | 95.4 | Minus |
| 3L | 28110227 | 3L | 15580207..15580511 | 308..4 | 1495 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:07:56 has no hits.
MXO01343.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:35 Download gff for
MXO01343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7764-PA | 1..773 | 9..781 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:35 Download gff for
MXO01343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrn-RA | 23..804 | 1..781 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:43 Download gff for
MXO01343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrn-RA | 23..804 | 1..781 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:43 Download gff for
MXO01343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15579679..15580152 | 308..781 | 95 | <- | Minus |
| 3L | 15580208..15580512 | 1..307 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:35 Download gff for
MXO01343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15572779..15573252 | 308..781 | 95 | <- | Minus |
| arm_3L | 15573308..15573612 | 1..307 | 98 | | Minus |
