Clone MXO01344 Report

Search the DGRC for MXO01344

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:44
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG2712-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01344.3prime Sequence

825 bp (729 high quality bases) assembled on 2007-03-15

> MXO01344.3prime
ATGGTCTAGAAAGCTTGCGGCCTCCACATTCTCGTCCTGCTCCTCCAGTT
GGACACCCACTTCATGCTCGGCCCGCCTCCGCTGTCTGCCCGCCTTGTGC
GACTGGCGATGGATGGCGAGTGAGATGCGGCGCTTGAAGGACTTGCCGCA
CTGCTCACAGCCGAACGGTCGCTCGCTGCTGTGGACGAGCATGTGGCGGT
TGAGCTCGGATGTGCTGCCGAAGCTGCGCTTCTGGCACACCGGGCACGGG
TGGGGCTTCTCCTGGCTGTGGCAGCGCTTGTGGGCAATCAGATTGCTCGA
GTAGCGGAAGCGACGGCCGCAAATGTCGCAGCCGTGCGGCTTCTCGCCCG
TGTGGGTGAGCATGTGCTTCTTGTAGCCCGATTTCTCCCCCCCCCTCTTG
CCGCAGATGCTGCACTCAAATGGCTTGATTCCGCTGTGGATTAGAAGGTG
TGTGCGCAGCGAGGACGCCTGCCGGTAGACCTTGAAGCAGGTGGGGCACC
TGTTCGGATTGTTACGATCGTGCAGCGTGACATGGCCGTCGCGGGCGTTT
CGCGTCTTAAAGGACTCTCCGCAGATTGTGCAAACGTAGGGCGTGGCCGT
GCCATGTAGCTGCATATGGTACTTGAAGGAGTTGTTGGTGCTTAGTTGCT
TGCCACAGATTTTACACTGTAGGGAGGGATTGAGGGGTTTCCAAGGCCGG
CTTCCACTGGGCAAAGTTTTCTGCGTCGCCGAAGTCTGTGCTGATTTCTC
CACAATCTCGTAGACATCTTCGCCAGCTTTGGCCTGGCAAACGGGCTCCA
CTTGGAGGCACTCTTCAATGCAGTG

MXO01344.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG2712-PA 1506 CG2712-RA 697..1128 825..394 2085 99.3 Minus
CG2712-PA 1506 CG2712-RA 1141..1500 381..22 1800 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG2712-RA 1804 CG2712-RA 793..1606 825..12 3860 98.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2733556..2734204 660..12 3065 98.2 Minus
X 23542271 X 2733321..2733485 825..661 795 98.8 Minus
Blast to na_te.dros performed on 2014-11-28 21:05:42 has no hits.

MXO01344.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:35 Download gff for MXO01344.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2712-PA 697..1506 16..825 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:09 Download gff for MXO01344.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2712-RA 793..1606 12..825 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:19 Download gff for MXO01344.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2712-RA 793..1606 12..825 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:19 Download gff for MXO01344.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2733321..2733485 661..825 98 -> Minus
X 2733556..2734204 12..660 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:09 Download gff for MXO01344.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2627354..2627518 661..825 98 -> Minus
arm_X 2627589..2628237 12..660 98   Minus

MXO01344.5prime Sequence

815 bp (279 high quality bases) assembled on 2007-03-15

> MXO01344.5prime
CAATCGACATGACGACCATGTCGCCCCCGTCCCCCATGGACGCCTTGTGC
CGCGTGTGCCACACAGCATCGCCGCGCTGCCTGCCGCTCTTCAAACCGCT
CGACGATCCAATTTCCGGCAAACCAGCGACGCTGGCCAGCATTTTAAGCT
ACTGCAGCGGTCTGGAGATCCTAGAGGCGGAGCTCTTCCTGCCCCACCAC
ATCTGCCCGGACTGCGTGGCCAAGTTGCGGCTCTCGCTGGAATTCAAGCG
GAGTGTCCATCGCATGGACAGAATTCTGCGGAAAAGTCATGCGGACTTTT
GCCGCAACAAAAAGATCAGCGCGGTGAATACTATGGCCAGGCTGTCAACC
GAGATTCCGGAGGATTTTGTACTCGTGCTCGATGATTTCCCCCCCCCCGA
CTATCCAGCAGAAACGATACAAAAAAAGGAGCAACTCCTGGTCGTATAAT
CAGATGAGGCGGAGAGCCGGCTGGAAGCGCCAATTGTACAGGAGGAGAGG
CTGGATATTGCACTGGAACAGCACGAAGACAATCTCTGCGAGATTGTCAA
CGATCCGGATCCGGAGCAACGTAGGAGCAGGTTAGAAAGATCCGAGCCAG
CGCTGCAATGTCCCATTTGCGGCAAACAACTGGCTAGGAAGCGGACCTTT
CAGTACCACATGAGGCTACATGGCCAGCCAAAAATTCGCCAAGAAGACAA
CGACCACTGCATTGAAGAGTGCCTCCAAGTGGAGCCCGTTTTGCAGGCCA
AAGCTGGCGAAGATGTCTACGAGATTGTGGAGAAATCAACACAGACTTCG
GCGACGCAGACAACT

MXO01344.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG2712-PA 1506 CG2712-RA 419..802 427..810 1820 98.9 Plus
CG2712-PA 1506 CG2712-RA 1..377 9..385 1760 98.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG2712-RA 1804 CG2712-RA 96..903 8..815 3635 96.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2732564..2733170 8..614 2660 95.9 Plus
X 23542271 X 2733231..2733431 615..815 975 99 Plus
Blast to na_te.dros performed on 2014-11-28 20:12:16 has no hits.

MXO01344.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:35 Download gff for MXO01344.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2712-PA 1..807 9..815 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:47 Download gff for MXO01344.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2712-RA 91..903 1..815 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:44 Download gff for MXO01344.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2712-RA 91..903 1..815 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:44 Download gff for MXO01344.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2733231..2733431 615..815 99   Plus
X 2732559..2733170 1..614 95 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:47 Download gff for MXO01344.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2626592..2627203 1..614 95 -> Plus
arm_X 2627264..2627464 615..815 99   Plus