Clone MXO01345 Report

Search the DGRC for MXO01345

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:45
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptSide-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01345.3prime Sequence

857 bp (803 high quality bases) assembled on 2007-03-15

> MXO01345.3prime
ATGGTCTAGAAAGCTTGCCCAGGGTCGCCACATGCTCTCATCTTGCCCAG
CTGCTGCTGCAGCAGCTGCCGCCTGGGCCATGTAGTGATACTCCTCCTCC
TGGCGTTGCCTTAGAGCCTGACGAGCGGCGTTGCTTGTCTGGGGTCGCGG
ACTGGTCGCCGGAGCCTCGTTCTCATTGGAACCGATGCCACTCTCGGATC
TTGGTGAGGATTGCTGCGTGGCGGGCATGGACTTCAGTTCCGACATCGAG
ACGCCGGAACTGACAGACGCTGCCACCGAGGCAGGTCTCTCTTGGTGCAC
CGTTGGCGTTCCGGCACCGGAAGTAGCCATTGCCGCAACTGAGGCTCCTG
CTGAAGCGGCCACAGCCATGCTGTTGGCATAAGCCGCTGCTGCGGCAGCG
ACATGGGCAGCCTCCAAGCCTCCCGGAAAACTGGGACTCAACTTGCCGGC
CAAATGTGGTTGAACCCGTTGCAACTCTATCAACCGCTCAAAATCCGTTC
GGGTAGCAATCGGATCCACCAGCGGCTGGGCACTAAGGCCAAGGGCCGCT
GCCAGCTGGACATAGTGGGGCGGCAGGACCAGGACTCCGTTGGCGGACTC
TGGTTGCTGCTGCACGTGCGCCTTAAGCTGTTGCTTGTACTGCTCCAGGA
CATTGGCGCACACCTTGTTGCGATCCTCCTCGTAGCTCAGCTCGCTGGGA
GCGACGGCATCTACATGCGGCGACGTCTGGCCTTGTGTCTGGCTTTGCAC
CTGTATTGGTATCGGAGTTTGCGCCTGCGCCTGGAGTCCACGATTGTTGT
TCTCATCCTGNGGTGCTGGCGTGACGGGCACCGTCCTCTGCTCANCGGCT
ACCATTT

MXO01345.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10446-PA 1524 Side-RA 683..1521 857..19 4132 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
Side-RA 2188 CG10446-RA 1030..1868 857..19 4158 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19029622..19030460 857..19 4158 99.6 Minus
Blast to na_te.dros performed 2014-11-28 21:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..6847 648..598 111 68.6 Minus

MXO01345.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:36 Download gff for MXO01345.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10446-PA 683..1524 16..857 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:17 Download gff for MXO01345.3prime
Subject Subject Range Query Range Percent Splice Strand
Side-RA 1030..1873 13..857 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:26 Download gff for MXO01345.3prime
Subject Subject Range Query Range Percent Splice Strand
Side-RA 1030..1873 13..857 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:26 Download gff for MXO01345.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19029622..19030465 13..857 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:17 Download gff for MXO01345.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19029622..19030465 13..857 99   Minus

MXO01345.5prime Sequence

868 bp (686 high quality bases) assembled on 2007-03-15

> MXO01345.5prime
CAGTCGACATGACAGCAAAACGTGATAAGGATTACTCAAAAAATAAATCA
GCACCTGGCATCGGATTCACCGCCGCCGGCTCAACTAATGGCAGCGGCAT
AAAGTCCATCGGGCTGGTGAGCTCAACGCAGAATGTGACTTCGTCGCAGG
ACATCAGCAAGCGGACAAACAAACCACTCATGGAGAAGCGCCGGCGGGCG
CGAATCAACCAGAGCCTGGCCATCCTGAAGGCCCTCATCCTCGAGTCCAC
CAAGACCCAAAATGCCAAGAACGGCGAGGGCCAGGCGAAGCACACCAAGC
TGGAGAAGGCGGACATCCTGGAGCTAACCGTTCGCCACTTTCAGCGGCAT
CGCAATCTCGACGATCCCACGGTTAACAAATACAGAGCTGGTTACACCGA
CTGCGCTCGCGAGGTGGCTCGTTACCTGACCACCCCGGAACCGCCGCCCA
TGGGCACCATGCCCACCTTGGCGGAGCCCGGCTCCAAGGCGCGACTGCTG
CGCCACCTGGACCAGTGCATAGCCGAGATCGACGTGGAGATCTGTCCCCA
TTCGACGGCCGCGTTTGCCGAAAGCCCCAGCAGTAGCAGTTGCTTCGACC
TGAATCACGGGAAGAAGTCGCAGCCCGAGGAGCATTCGCTGGACTACAGC
AGCCAGGATTCGAATCCAGTGGACTACAGCAAGGGTCTGAAAATGGTAGC
CGCTGAGCAGAGGACGCTGCCCGTCACGCCAGCACCCCAGGATGAGAACA
ACAATCGTGGACTCCAGGCGCAGGCGCAAACTCCGATACCAATACAGGTG
CAAAGCCAGACACAAGGCCAGACGTCGCCGCATGTAGATGCCGTCGCTCC
CAGCGAGCTGAGCTACGA

MXO01345.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10446-PA 1524 Side-RA 1..860 9..868 4250 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
Side-RA 2188 CG10446-RA 348..1207 9..868 4270 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19029301..19029799 370..868 2465 99.6 Plus
2L 23513712 2L 19028800..19029112 57..369 1565 100 Plus
2L 23513712 2L 19028057..19028106 9..58 250 100 Plus
Blast to na_te.dros performed on 2014-11-28 21:23:24 has no hits.

MXO01345.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:36 Download gff for MXO01345.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10446-PA 1..859 9..867 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:30:45 Download gff for MXO01345.5prime
Subject Subject Range Query Range Percent Splice Strand
Side-RA 343..1206 2..867 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:11 Download gff for MXO01345.5prime
Subject Subject Range Query Range Percent Splice Strand
Side-RA 343..1206 2..867 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:11 Download gff for MXO01345.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19028052..19028105 2..57 92 -> Plus
2L 19028801..19029112 58..369 100 -> Plus
2L 19029301..19029798 370..867 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:30:45 Download gff for MXO01345.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19028052..19028105 2..57 92 -> Plus
arm_2L 19028801..19029112 58..369 100 -> Plus
arm_2L 19029301..19029798 370..867 99   Plus