MXO01345.3prime Sequence
857 bp (803 high quality bases) assembled on 2007-03-15
> MXO01345.3prime
ATGGTCTAGAAAGCTTGCCCAGGGTCGCCACATGCTCTCATCTTGCCCAG
CTGCTGCTGCAGCAGCTGCCGCCTGGGCCATGTAGTGATACTCCTCCTCC
TGGCGTTGCCTTAGAGCCTGACGAGCGGCGTTGCTTGTCTGGGGTCGCGG
ACTGGTCGCCGGAGCCTCGTTCTCATTGGAACCGATGCCACTCTCGGATC
TTGGTGAGGATTGCTGCGTGGCGGGCATGGACTTCAGTTCCGACATCGAG
ACGCCGGAACTGACAGACGCTGCCACCGAGGCAGGTCTCTCTTGGTGCAC
CGTTGGCGTTCCGGCACCGGAAGTAGCCATTGCCGCAACTGAGGCTCCTG
CTGAAGCGGCCACAGCCATGCTGTTGGCATAAGCCGCTGCTGCGGCAGCG
ACATGGGCAGCCTCCAAGCCTCCCGGAAAACTGGGACTCAACTTGCCGGC
CAAATGTGGTTGAACCCGTTGCAACTCTATCAACCGCTCAAAATCCGTTC
GGGTAGCAATCGGATCCACCAGCGGCTGGGCACTAAGGCCAAGGGCCGCT
GCCAGCTGGACATAGTGGGGCGGCAGGACCAGGACTCCGTTGGCGGACTC
TGGTTGCTGCTGCACGTGCGCCTTAAGCTGTTGCTTGTACTGCTCCAGGA
CATTGGCGCACACCTTGTTGCGATCCTCCTCGTAGCTCAGCTCGCTGGGA
GCGACGGCATCTACATGCGGCGACGTCTGGCCTTGTGTCTGGCTTTGCAC
CTGTATTGGTATCGGAGTTTGCGCCTGCGCCTGGAGTCCACGATTGTTGT
TCTCATCCTGNGGTGCTGGCGTGACGGGCACCGTCCTCTGCTCANCGGCT
ACCATTT
MXO01345.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10446-PA | 1524 | Side-RA | 683..1521 | 857..19 | 4132 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Side-RA | 2188 | CG10446-RA | 1030..1868 | 857..19 | 4158 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19029622..19030460 | 857..19 | 4158 | 99.6 | Minus |
Blast to na_te.dros performed 2014-11-28 21:43:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6847 | 648..598 | 111 | 68.6 | Minus |
MXO01345.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:36 Download gff for
MXO01345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10446-PA | 683..1524 | 16..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:17 Download gff for
MXO01345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Side-RA | 1030..1873 | 13..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:26 Download gff for
MXO01345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Side-RA | 1030..1873 | 13..857 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:26 Download gff for
MXO01345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19029622..19030465 | 13..857 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:17 Download gff for
MXO01345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19029622..19030465 | 13..857 | 99 | | Minus |
MXO01345.5prime Sequence
868 bp (686 high quality bases) assembled on 2007-03-15
> MXO01345.5prime
CAGTCGACATGACAGCAAAACGTGATAAGGATTACTCAAAAAATAAATCA
GCACCTGGCATCGGATTCACCGCCGCCGGCTCAACTAATGGCAGCGGCAT
AAAGTCCATCGGGCTGGTGAGCTCAACGCAGAATGTGACTTCGTCGCAGG
ACATCAGCAAGCGGACAAACAAACCACTCATGGAGAAGCGCCGGCGGGCG
CGAATCAACCAGAGCCTGGCCATCCTGAAGGCCCTCATCCTCGAGTCCAC
CAAGACCCAAAATGCCAAGAACGGCGAGGGCCAGGCGAAGCACACCAAGC
TGGAGAAGGCGGACATCCTGGAGCTAACCGTTCGCCACTTTCAGCGGCAT
CGCAATCTCGACGATCCCACGGTTAACAAATACAGAGCTGGTTACACCGA
CTGCGCTCGCGAGGTGGCTCGTTACCTGACCACCCCGGAACCGCCGCCCA
TGGGCACCATGCCCACCTTGGCGGAGCCCGGCTCCAAGGCGCGACTGCTG
CGCCACCTGGACCAGTGCATAGCCGAGATCGACGTGGAGATCTGTCCCCA
TTCGACGGCCGCGTTTGCCGAAAGCCCCAGCAGTAGCAGTTGCTTCGACC
TGAATCACGGGAAGAAGTCGCAGCCCGAGGAGCATTCGCTGGACTACAGC
AGCCAGGATTCGAATCCAGTGGACTACAGCAAGGGTCTGAAAATGGTAGC
CGCTGAGCAGAGGACGCTGCCCGTCACGCCAGCACCCCAGGATGAGAACA
ACAATCGTGGACTCCAGGCGCAGGCGCAAACTCCGATACCAATACAGGTG
CAAAGCCAGACACAAGGCCAGACGTCGCCGCATGTAGATGCCGTCGCTCC
CAGCGAGCTGAGCTACGA
MXO01345.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10446-PA | 1524 | Side-RA | 1..860 | 9..868 | 4250 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Side-RA | 2188 | CG10446-RA | 348..1207 | 9..868 | 4270 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19029301..19029799 | 370..868 | 2465 | 99.6 | Plus |
2L | 23513712 | 2L | 19028800..19029112 | 57..369 | 1565 | 100 | Plus |
2L | 23513712 | 2L | 19028057..19028106 | 9..58 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:23:24 has no hits.
MXO01345.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:36 Download gff for
MXO01345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10446-PA | 1..859 | 9..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:30:45 Download gff for
MXO01345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Side-RA | 343..1206 | 2..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:11 Download gff for
MXO01345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Side-RA | 343..1206 | 2..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:11 Download gff for
MXO01345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19028052..19028105 | 2..57 | 92 | -> | Plus |
2L | 19028801..19029112 | 58..369 | 100 | -> | Plus |
2L | 19029301..19029798 | 370..867 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:30:45 Download gff for
MXO01345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19028052..19028105 | 2..57 | 92 | -> | Plus |
arm_2L | 19028801..19029112 | 58..369 | 100 | -> | Plus |
arm_2L | 19029301..19029798 | 370..867 | 99 | | Plus |