MXO01346.3prime Sequence
860 bp (752 high quality bases) assembled on 2007-03-15
> MXO01346.3prime
ATGGTCTAGAAAGCTTGCGACCTGATCGATTTTTAAAGCATCCAAAGTGG
TGCCATCGGCATGTGCTTTTTGAGCGTAGTAGCCATCGTAGGAGCTTTGC
GCCTTGTCAACCTCCTGCTGATGCTGCAACAGTTGCAGTTGCTCGTAGGC
AGCCTCCTGAACCTTGCGGCGCTCCTCCTCCGCCAGTCGCTTTACTTCGT
TCTCTTCAAACTGCTGCGCCTGGAGTTCAGCGGATGCCGCTGCTCGCTCC
GCCGCTGCCTCCTGGTACTCATCGTAGGAGTGCAGGCTGCGGTCACTACT
TTCAAGCTTGTGCAGCGACGATAGCTGCTCCTTGGCCGCCTCCGCAATTT
CGCGCCGCTTCGCATCCGCCTGGCGCTTCGCCTCTCGCCCGCTGCGTTCC
TGCTCTTCCAGCTCCTCGCGAGCGGCATAAAACTTGGGCGAAATGACGGG
TGGACGGTTCTCGTGGGTGCGCTGGTGGCGCTTCAGCGCCGTCTCCTGGC
GGAAATGGGTGCCGCAGGTCTTGCACTCAAAGGGTTTCTCGCCCGTATGA
ATCCACTCGTGATGCCTCAACGTTTGAGCCTTTGCGAATCTTTTGGGGCA
AAAGCGGCAGGCAAAATCTTTGACCTTTTCGTGGATGATCTTATAGTGCC
GCTTCATGTTTCCGATATTGTTGAATCCCTGACCACAACCGGGGCAGATA
TGTTTGCCCTCCTTCTTGGTAAAGTTCACCTGCGGCGACCACGACGGCAC
TGAAACAGAGGGTATGGGGTTCACAGCAGTGCCAGCCAACTGCGCCAGAT
CCACTCGTTGTACACGGCGTGGATCTTTGGGAATTGTGGCCACGGATTCG
GCGCACACCT
MXO01346.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10274-PA | 1545 | CG10274-RA | 701..1538 | 860..23 | 4115 | 99.6 | Minus |
| CG10270-PA | 2325 | D19B-RA | 1708..1760 | 744..692 | 165 | 92.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10274-RB | 3034 | CG10274-RB | 1810..2651 | 860..19 | 4150 | 99.5 | Minus |
| D19A-RA | 3233 | CG10269-RA | 2002..2313 | 792..481 | 660 | 80.8 | Minus |
| D19B-RA | 2685 | CG10270-RA | 1822..2078 | 749..493 | 370 | 77.7 | Minus |
| D19A-RA | 3233 | CG10269-RA | 2429..2679 | 269..19 | 235 | 73.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6179060..6179901 | 19..860 | 4150 | 99.5 | Plus |
| 3L | 28110227 | 3L | 6186750..6187061 | 481..792 | 660 | 80.8 | Plus |
| 3L | 28110227 | 3L | 6182783..6183039 | 493..749 | 370 | 76.3 | Plus |
| 3L | 28110227 | 3L | 6191484..6191682 | 683..485 | 260 | 75.4 | Minus |
| 3L | 28110227 | 3L | 6186384..6186634 | 19..269 | 235 | 72.9 | Plus |
| 3L | 28110227 | 3L | 6182523..6182650 | 140..267 | 190 | 76.6 | Plus |
Blast to na_te.dros performed 2014-11-28 23:20:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3267..3310 | 159..116 | 112 | 72.7 | Minus |
MXO01346.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:36 Download gff for
MXO01346.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10274-PA | 701..1545 | 16..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:59 Download gff for
MXO01346.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10274-RA | 1864..2713 | 10..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:25 Download gff for
MXO01346.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10274-RB | 1810..2659 | 10..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:25 Download gff for
MXO01346.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6179052..6179901 | 10..860 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:59 Download gff for
MXO01346.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6172152..6173001 | 10..860 | 99 | | Plus |
MXO01346.5prime Sequence
848 bp (839 high quality bases) assembled on 2007-03-15
> MXO01346.5prime
CAGTCGACATGAAGAAGATGCACGGCCCCACCAAGGCAGCGGCGCCCCCA
CGGGATTACCCTTGCACCGAGTGCGAGAAGGTATTCCGCTGTCCCATGGC
GCTCAAGAAGCACATGTACAAGCACGACGGCAAGGAGTTGCCTTTCCCCT
GTAACATCTGTGGCAAAAGGTTCGTAATCAATAGTGCTCTAAAGGATCAT
CTGATGCGGCATGCGGGCATTAAGAACTACGTGTGTCCGTACTGTGGCGT
GGGAAAAACCACCAGGCAGGAATGGAACACACACATACTGACGCATACCC
AGGAGAAGAAGTTCAAGTGCCACATATGCGAGCACGCATCGCACAATAAG
CAGAGCCTGGCCAACCACATTAAGATCGTGCACGATTATATCCCCCCCCA
TGCGTGTCAATACTGTGGAAAGACAATTGGCAAGTCACACGCCTGCAAGA
TCCACGAGATGACGCACACGGGGGAAAAGCGCTGTGAGTGCAAGGTTTGT
GGAAAGAAGTTTCTCTATCCTAAGAGTCTGACCAAGCACTTGAAGACTCA
TGAGAAGCGTGTGCTTCGTGCTATTGAGACCTACCGCCAGCGGCAGGTGG
AAATGGGCGAGACGCCTGGTGAACAGTTCGACAATCCACCCGCGCCACCA
GTTGAGGGCATATCCATTGAGCCGATCATGTCCCGAAACGCTGCCGACGA
ATTGCTTAAGGTGTGCGCCGAATCCGTGGCCACCATTCCCAAAGATCCAC
GCCGTGTACAACGAGTGGATCTGGCGCAGTTGGCTGGCACTGCTGTGAAC
CCCATACCCTCTGTTTCAGTGCCGTCGTGGTCGCCGCAGGTGAACTTT
MXO01346.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10274-PA | 1545 | CG10274-RA | 392..840 | 400..848 | 2195 | 99.5 | Plus |
| CG10274-PA | 1545 | CG10274-RA | 1..377 | 9..385 | 1835 | 99.4 | Plus |
| CG10270-PA | 2325 | D19B-RA | 1045..1107 | 63..125 | 165 | 90.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:13:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10274-RB | 3034 | CG10274-RB | 1108..1949 | 7..848 | 4015 | 98.5 | Plus |
| D19A-RA | 3233 | CG10269-RA | 1217..1766 | 7..556 | 800 | 77 | Plus |
| D19B-RA | 2685 | CG10270-RA | 1153..1662 | 52..561 | 705 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:13:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6180179..6180668 | 496..7 | 2255 | 97.3 | Minus |
| 3L | 28110227 | 3L | 6179762..6180117 | 848..493 | 1780 | 100 | Minus |
| 3L | 28110227 | 3L | 6187297..6187846 | 556..7 | 785 | 76.2 | Minus |
| 3L | 28110227 | 3L | 6183199..6183708 | 561..52 | 705 | 75.9 | Minus |
| 3L | 28110227 | 3L | 6190735..6191126 | 105..496 | 460 | 74.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:13:05 has no hits.
MXO01346.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:37 Download gff for
MXO01346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10274-PA | 1..840 | 9..848 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:51 Download gff for
MXO01346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10274-RA | 1157..2003 | 1..848 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:40 Download gff for
MXO01346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10274-RB | 1103..1949 | 1..848 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:40 Download gff for
MXO01346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6179762..6180115 | 495..848 | 100 | <- | Minus |
| 3L | 6180181..6180673 | 1..494 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:51 Download gff for
MXO01346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6172862..6173215 | 495..848 | 100 | <- | Minus |
| arm_3L | 6173281..6173773 | 1..494 | 96 | | Minus |
