MXO01347.3prime Sequence
837 bp (804 high quality bases) assembled on 2007-03-15
> MXO01347.3prime
ATGGTCTAGAAAGCTTGCCTCCCGCTGCGGCTGTTGCTGCTGCGGTATGA
AGACCTGATCGCCCACAATGTGTATGACGTTCTGCATGCCCTGCTGTCGT
GCCGCTTGCTGTTGCTGCTGCTGCCCAGTGCCGCCCCCGCCGCCGCCCTC
ATGTTTGATGTATGCCTGTCCACCACCCGCTAATGTTGCTGTCAAGTGCT
GCTGGTGTTGCTGCTGCAGTTGCTGCTGTTGCTGCTGCTGGGGCAGCACA
CCTTGGGCCAGGATGGCCGGCGCCCCCGCGGCCTGCGGTGCATTCGATAT
CACTCTCGTTGGCGTCGTACCAGATGATTGTCCTCCTGCTGATCCTGCTC
CGCCTGCTCCATCACTGCCCACTGTGTTGTCTTCCTCTCCCCCGGTGTTC
ATCTCCATGCTGGAGTCTAGGGTTGTATCGTTACCGGACTTACTTTTCTT
CTCCTTCTTCACGCCGGGTTTGGCAAAATGCCGCAGCTCGAGATGGCGCC
GCAGGTTCCGGGATTGACGAATGACAGCATAGCAAATGGGGCAAGTAGCA
GGTTGTTCAGATTGTGATCGTGAACGTGGTTTCTCTGTTCCGGGCGGATG
TTTAGCGCGTTTTGCCTTTGGCGTGGATAGGACGCCGCTTGTATTGCCGC
CAGATGAGCCAGTGGCTCCTTGTGCTGGTGTTATCTCGCCAGTTGCCGCA
TTAGCCGACGTTACCGGTATCATGTTGTTGGGGTCCATGGTCACAATAGT
CTCTACCTTTTGTCCTTCGCTCTTGATGATCGGTGTGGATGATAGCAGTT
GGCCCTCGGCTCCATTTTCGCCAAGCACCTGCTGCAC
MXO01347.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33261-PD | 1560 | Trl-RD | 739..1182 | 837..394 | 2220 | 100 | Minus |
| CG33261-PC | 1560 | Trl-RC | 739..1182 | 837..394 | 2220 | 100 | Minus |
| CG33261-PB | 1560 | Trl-RB | 739..1182 | 837..394 | 2220 | 100 | Minus |
| CG33261-PE | 1560 | Trl-RE | 739..1182 | 837..394 | 2220 | 100 | Minus |
| CG33261-PG | 1431 | Trl-RG | 610..1053 | 837..394 | 2220 | 100 | Minus |
| CG33261-PH | 1560 | Trl-RH | 739..1182 | 837..394 | 2220 | 100 | Minus |
| CG33261-PA | 1749 | Trl-RA | 739..1132 | 837..444 | 1970 | 100 | Minus |
| CG33261-PF | 1749 | Trl-RF | 739..1132 | 837..444 | 1970 | 100 | Minus |
| CG33261-PI | 1704 | Trl-RI | 739..1132 | 837..444 | 1970 | 100 | Minus |
| CG33261-PD | 1560 | Trl-RD | 1195..1552 | 381..24 | 1765 | 99.7 | Minus |
| CG33261-PC | 1560 | Trl-RC | 1195..1552 | 381..24 | 1765 | 99.7 | Minus |
| CG33261-PB | 1560 | Trl-RB | 1195..1552 | 381..24 | 1765 | 99.7 | Minus |
| CG33261-PE | 1560 | Trl-RE | 1195..1552 | 381..24 | 1765 | 99.7 | Minus |
| CG33261-PG | 1431 | Trl-RG | 1066..1423 | 381..24 | 1765 | 99.7 | Minus |
| CG33261-PH | 1560 | Trl-RH | 1195..1552 | 381..24 | 1765 | 99.7 | Minus |
| CG11491-PG | 1992 | br-RG | 1397..1433 | 248..212 | 135 | 94.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trl-RH | 1911 | CG33261-RH | 1029..1842 | 837..24 | 3980 | 99.3 | Minus |
| Trl-RE | 2156 | CG33261-RE | 1274..2087 | 837..24 | 3980 | 99.3 | Minus |
| Trl-RB | 4441 | CG33261-RB | 1095..1908 | 837..24 | 3980 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14752914..14753471 | 24..581 | 2700 | 98.9 | Plus |
| 3L | 28110227 | 3L | 14753631..14753886 | 582..837 | 1280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:44:08 has no hits.
MXO01347.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:37 Download gff for
MXO01347.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33261-PE | 739..1560 | 18..837 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:23 Download gff for
MXO01347.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trl-RE | 1274..2092 | 19..837 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:31 Download gff for
MXO01347.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trl-RB | 1095..1913 | 19..837 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:31 Download gff for
MXO01347.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14753631..14753886 | 582..837 | 100 | | Plus |
| 3L | 14752909..14753471 | 19..581 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:23 Download gff for
MXO01347.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14746009..14746571 | 19..581 | 98 | <- | Plus |
| arm_3L | 14746731..14746986 | 582..837 | 100 | | Plus |
MXO01347.5prime Sequence
877 bp (692 high quality bases) assembled on 2007-03-15
> MXO01347.5prime
CAGTCGACATGTCGCTGCCAATGACCCCGCTGTATTCGCTCACCTGGGGC
GATTACGGCACCAGCCTCGTATCGGCAATCCAATTGTTGCGCTGCCATGG
CCACCTCGTCGATTGCACGTTGGCCGCCGGCGGGCGGAGTTTTCCCGCCC
ACAAGATAGTCCTGTGCGCCGCCTCCCCCTTTCTGCTGGACTTGCTAAAG
AATACACCATGCAAGCATCCAGTGGTTATGTTGGCTGGCGTCAATGCGAA
CGATCTGGAGGCGCTGCTGGAGTTTGTGTACCGCGGAGAGGTGAGCGTGG
ATCACGCCCAGCTGCCGTCGCTACTGCATGTTGCCCAGTGCCTGAACATC
CAGGGACTGGCACCGCAGACGGTTACCAATGTTTTTTCCCCCCCCCCCTC
GATACAACTGCAGCACATAAATAAAAAACATCACGACCAAGACCAACTGA
TTGCCACGATCGCCACGGCTCCACAGCAAACGGTTCATGCCCAGGTGGTG
GAGGACATCCATCATCAGGGCCAGATTCTCCAGGCAACGACCCAGACCAA
CGCAGCAGGACAACAGCAGACCATTGTGACAACCGACGCGGCTAAACATG
ACCAGGCAGTGATTCAGGCTTTTCTTCCGGCACGCAAACGCAAACCACGC
GTAAAGAAAATGTCACCTACGGCACCGAAAATAAGCAAAGTTGAAAGAAT
GGATACGATTATGGGCACACCGACCTCTTCACACGGCTCTGGATCCGTGC
AGCAGGTGCTTGGCGAAAATGGAGCCGAGGGCCAACTGCTATCATCCACA
CCGATCATCAAGAGCGAAGGACAAAAGGTAGAGACTATTGTGACCATGGG
ACCCCAACAACATGATACCGGTAACGT
MXO01347.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33261-PA | 1749 | Trl-RA | 419..841 | 427..849 | 2090 | 99.7 | Plus |
| CG33261-PD | 1560 | Trl-RD | 419..841 | 427..849 | 2090 | 99.7 | Plus |
| CG33261-PC | 1560 | Trl-RC | 419..841 | 427..849 | 2090 | 99.7 | Plus |
| CG33261-PB | 1560 | Trl-RB | 419..841 | 427..849 | 2090 | 99.7 | Plus |
| CG33261-PE | 1560 | Trl-RE | 419..841 | 427..849 | 2090 | 99.7 | Plus |
| CG33261-PF | 1749 | Trl-RF | 419..841 | 427..849 | 2090 | 99.7 | Plus |
| CG33261-PH | 1560 | Trl-RH | 419..841 | 427..849 | 2090 | 99.7 | Plus |
| CG33261-PI | 1704 | Trl-RI | 419..841 | 427..849 | 2090 | 99.7 | Plus |
| CG33261-PG | 1431 | Trl-RG | 290..712 | 427..849 | 2090 | 99.7 | Plus |
| CG33261-PA | 1749 | Trl-RA | 20..371 | 28..379 | 1685 | 99.1 | Plus |
| CG33261-PD | 1560 | Trl-RD | 20..371 | 28..379 | 1685 | 99.1 | Plus |
| CG33261-PC | 1560 | Trl-RC | 20..371 | 28..379 | 1685 | 99.1 | Plus |
| CG33261-PB | 1560 | Trl-RB | 20..371 | 28..379 | 1685 | 99.1 | Plus |
| CG33261-PE | 1560 | Trl-RE | 20..371 | 28..379 | 1685 | 99.1 | Plus |
| CG33261-PF | 1749 | Trl-RF | 20..371 | 28..379 | 1685 | 99.1 | Plus |
| CG33261-PH | 1560 | Trl-RH | 20..371 | 28..379 | 1685 | 99.1 | Plus |
| CG33261-PI | 1704 | Trl-RI | 20..371 | 28..379 | 1685 | 99.1 | Plus |
| CG33261-PG | 1431 | Trl-RG | 20..192 | 28..200 | 840 | 99.4 | Plus |
| CG33261-PG | 1431 | Trl-RG | 195..242 | 332..379 | 240 | 100 | Plus |
| CG33261-PA | 1749 | Trl-RA | 840..868 | 849..877 | 145 | 100 | Plus |
| CG33261-PD | 1560 | Trl-RD | 840..868 | 849..877 | 145 | 100 | Plus |
| CG33261-PC | 1560 | Trl-RC | 840..868 | 849..877 | 145 | 100 | Plus |
| CG33261-PB | 1560 | Trl-RB | 840..868 | 849..877 | 145 | 100 | Plus |
| CG33261-PE | 1560 | Trl-RE | 840..868 | 849..877 | 145 | 100 | Plus |
| CG33261-PF | 1749 | Trl-RF | 840..868 | 849..877 | 145 | 100 | Plus |
| CG33261-PH | 1560 | Trl-RH | 840..868 | 849..877 | 145 | 100 | Plus |
| CG33261-PI | 1704 | Trl-RI | 840..868 | 849..877 | 145 | 100 | Plus |
| CG33261-PG | 1431 | Trl-RG | 711..739 | 849..877 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trl-RK | 3145 | CG33261-RK | 357..1224 | 9..877 | 3975 | 97.2 | Plus |
| Trl-RJ | 3814 | CG33261-RJ | 242..1109 | 9..877 | 3975 | 97.2 | Plus |
| Trl-RI | 3806 | CG33261-RI | 357..1224 | 9..877 | 3975 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14754085..14754552 | 666..199 | 2070 | 96.2 | Minus |
| 3L | 28110227 | 3L | 14753757..14753966 | 877..667 | 990 | 99.1 | Minus |
| 3L | 28110227 | 3L | 14756904..14757095 | 200..9 | 900 | 97.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:23:30 has no hits.
MXO01347.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:38 Download gff for
MXO01347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33261-PH | 1..868 | 9..877 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:30:49 Download gff for
MXO01347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trl-RK | 357..1224 | 9..877 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:14 Download gff for
MXO01347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trl-RI | 357..1224 | 9..877 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:14 Download gff for
MXO01347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14753757..14753966 | 667..877 | 99 | <- | Minus |
| 3L | 14754085..14754550 | 201..666 | 96 | <- | Minus |
| 3L | 14756904..14757095 | 9..200 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:30:49 Download gff for
MXO01347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14746857..14747066 | 667..877 | 99 | <- | Minus |
| arm_3L | 14747185..14747650 | 201..666 | 96 | <- | Minus |
| arm_3L | 14750004..14750195 | 9..200 | 97 | | Minus |
