Clone MXO01348 Report

Search the DGRC for MXO01348

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:48
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG14655-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01348.3prime Sequence

783 bp (751 high quality bases) assembled on 2007-03-15

> MXO01348.3prime
ATGGTCTAGAAAGCTTGCCGTGGCGTCCATCAAAAAGCGCTGGAAGACTT
CGCCATCGGAACTAGGTAGCTCTGTTTGTTGCGGTGAGTAGATTCTCAAG
TTCTGGAGTTGCTGCAGCGGAGAGCCATTCCCGCTGAAGTGTACCACCGC
AACCGGCTGTAGGGATATGAGCTGTCCCTCCTCCCGCGGCTCCACACCAC
AGATGCCCAGCTTTTGGCACTGCTCAACGACAATGTCGTCGATTGACTGC
GAAAGCAGTGCCTCCTGCTCAGGATCCACAATGGAGCTGCTGTTGATGGC
AGCTATTTCGGCGCTCGCTGGTGAAGGCTGAGTATGCGAGTCGTTGCCCT
CCAGGAACGCCTTTATCAGCTGCTCCGGTGTCTGGGCCTCCTCGGTGGGA
CATCGATGGGTCCTTTGACTGACCTTGTACCTGAACGTCTTTTGGCAGAG
CTCGCACTTGTAGGGCATCACTCCCGTGTGGATGCGCGTGTGGACAAGGA
AAGAGACTCGCTGCCGGAAACACTTGCCGCAGACTTCGCACTTGAAGGGC
TTTTCGCCGCTGTGAATCCTCTGGTGGTTATGCAGCGTAGACAGTTCCTT
GAAGGCGCGTCCACAAACCCCGCAGACATGGGGCTTTACCTCGCTGTGGT
AGAGCAAATGCTTGTGGTACGACTGCTGGAAGGTGAAGGTCCTGGCGCAG
ATCTCGCATGTGTACGGCATCTCGCCGGTGTGGAGCCGCTTGTGCTTCTT
CAGAAAGTACTTGGTGGTGAAGGACTTGCTGCA

MXO01348.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG14655-PA 1578 CG14655-RA 811..1575 783..19 3825 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG14655-RA 2137 CG14655-RA 1039..1803 783..19 3825 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4777831..4778340 19..528 2550 100 Plus
3R 32079331 3R 4778509..4778765 527..783 1285 100 Plus
Blast to na_te.dros performed on 2014-11-28 21:05:54 has no hits.

MXO01348.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:38 Download gff for MXO01348.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14655-PA 812..1578 18..782 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:18 Download gff for MXO01348.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14655-RA 1040..1808 11..782 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:27 Download gff for MXO01348.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14655-RA 1040..1808 11..782 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:27 Download gff for MXO01348.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4777826..4778339 11..527 99 <- Plus
3R 4778510..4778764 528..782 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:18 Download gff for MXO01348.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 603548..604061 11..527 99 <- Plus
arm_3R 604232..604486 528..782 100   Plus

MXO01348.5prime Sequence

833 bp (735 high quality bases) assembled on 2007-03-15

> MXO01348.5prime
CAGTCGACATGTGTTCCACCTCGGTGCTGTGTCCGCTCTGCGCGGTGCCC
AGTTTCGGCAGTATTGACGCACTGCAGCAGAGGCTGATCAAGGCGGCCAA
CGGCCCACTGGCCTGTCCCTTTGCCAACTGCAAGGAGCTCTTCCTGGGGC
TGGACAAGCTCACCATCCACCTGTTCTCGCACACAAGTCTGATGGCTCAG
GAGGGAAACGAGAGTCCAGCGAATGGCCAACCCGCCTCGTCCCGGGGCTT
CCTTGCCGCAGCTCCTCCCAAACGGAGGGCCAAGCGAACCAGGTCCAAGC
CCGTCGTCCCAACCCCACCGCCTGTGCGGACCACCCCGCCCGCCCACTGC
GACATTTGCGAGTTCAGTTTCCGGAATACCGAGTTGATGCACCCGCCCGT
CCGCTTAGTCCACGAAAATGCGGAGGGAGAACCCAAGCAAAAGGAACCCC
AACAGAAGGAACCGGACCAGGAGCCCTACAAGTGCCATCTCTGCTCCAAG
ACGTTCCGAATGAAGGGCTCCCTTCGAATCCACCTGAAAGTAGTGCACAT
GATGGGCGTGCCCTGCTCCAATCCCAATCCAAATCCTAATCCCAGTCCTA
CACCCGCTTCTACCACCAGTGCAGTTACTGCCACGCCCAAGCTGAGCATT
TGCGATCGCATTCGACACACAGAGCCTGGAGCCCTTGGCAACGGAAATAA
CTCCACGTGCACCGCATCCCAGCCATACGCGCTGAGTGGGGCGCTGAGCA
TGCTCCAGCAGTCCCCCAGTTCGCCGGAGTCGGGCACGGCCACCCCGAAG
CTGTGGGAGTGCGATGTGTGCAGCAAGTCCTTC

MXO01348.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG14655-PA 1578 CG14655-RA 390..825 398..833 2180 100 Plus
CG14655-PA 1578 CG14655-RA 1..375 9..383 1875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG14655-RA 2137 CG14655-RA 225..1053 5..833 4040 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4779618..4780078 465..5 2200 98.5 Minus
3R 32079331 3R 4778751..4779120 833..464 1850 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:53:46 has no hits.

MXO01348.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:39 Download gff for MXO01348.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14655-PA 1..825 9..833 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:56 Download gff for MXO01348.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14655-RA 221..1053 1..833 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:09 Download gff for MXO01348.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14655-RA 221..1053 1..833 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:09 Download gff for MXO01348.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4778751..4779119 465..833 100 <- Minus
3R 4779619..4780082 1..464 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:56 Download gff for MXO01348.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 604473..604841 465..833 100 <- Minus
arm_3R 605341..605804 1..464 98   Minus