MXO01349.3prime Sequence
712 bp (589 high quality bases) assembled on 2007-03-15
> MXO01349.3prime
ATGGTCTAGAAAGCTTGCCTGATGAGCCGCTCCCATCCTCTGGCCGTACA
TGGCGTATGGCGAGTAGTAGGGTCCCAGAGCAGCTGCCGCAGCCGCCGCG
GCAGGATTGAATGCTCCAGCGGCGCCGAAGGGCGAAGGTCCTCCAGCCAA
GGCGCCTGGTGGTGGCTTGGCGTATGGATGATACCTCGCCGCTGCCGCAG
CCGCTGACATGGGACTCAGTGGTGGTGTTGGATAGCCAGCTCGGAGAGCC
GATGGCGGAAATAGGGTTCCCAGCAGGGATTGAGCCTGCGATTGGGCCAA
GGCCGCCGCAGCAGCCGCCGGATCGGAGAGATTGCCCGTATGGGTGCGCA
GGTGGGAGAAGAGCTCGTCGGAGGTCTGGTTTCTCTCGCCGCACCAGGCA
TCGCCCACCACCCAACTGAAAACGTAGGGTGCCGAACGGGCTGCCGCCGC
GTTTGCCGCAGCAGCGGCCGCTGCCTGCGAGTATGGATGAGCTGGTGGCA
GTCCGGCGGCACTGGCCATGGCCAGGCCGTATTTCTGATGCTCGCACTGG
GTGCATCCGGCGGGGCAGGGGGCACCCATGAGCATTTGTTGCGTGTGCGC
CGAGTAGGGACATCCCTGGCAATACGGATCCTTGCAGACTGGCACTATAG
CCTCGCCGCCAGCTGGTGTCTTGATGCGCTGATAACTTATGTACGGATTG
GGCTGTCCCGCT
MXO01349.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4491-PA | 1614 | noc-RA | 1251..1611 | 379..19 | 1805 | 100 | Minus |
CG4491-PA | 1614 | noc-RA | 922..1234 | 708..396 | 1515 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
noc-RB | 2673 | CG4491-RB | 1305..1998 | 712..19 | 3335 | 98.7 | Minus |
noc-RA | 2859 | CG4491-RA | 1305..1998 | 712..19 | 3335 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14492465..14493158 | 712..19 | 3335 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:08:02 has no hits.
MXO01349.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:39 Download gff for
MXO01349.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4491-PA | 918..1614 | 15..712 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:38 Download gff for
MXO01349.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
noc-RA | 1305..2008 | 8..712 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:47 Download gff for
MXO01349.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
noc-RA | 1305..2008 | 8..712 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:47 Download gff for
MXO01349.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14492465..14493168 | 8..712 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:38 Download gff for
MXO01349.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14492465..14493168 | 8..712 | 98 | | Minus |
MXO01349.5prime Sequence
802 bp (721 high quality bases) assembled on 2007-03-15
> MXO01349.5prime
CAGTCGACATGGTTGTCTTGGAAGGAGGCGGCGGCGTTGTTACCATCGGT
AACAACCAGTACCTTCAACCGGATTATCTGGCCCCATTGCCAACGACGAT
GGACGCCAAAAAGAGTCCCTTGGCTCTGCTCGCACAGACTTGCTCCCAAA
TTGGAGCGGATTCGTCGGCAGTGAAACCCCTGCTGGCAATGGACAAGAAC
AAGACAAAGCCCGGAGCATGCTCCTCGTCGTCGAACTCGTCGAGTTCCTC
GGGCAGTGCTGAGATCTCGGCAGCCAAGTCACCCTCCGGCCAGGCCAAAT
CGCCCAAGTCGAGCACTCCAATCAGCTCGACGGCAACCAGCGCAAGTCTG
AGTAATACCAGCACCGGTGAAATCAAACTGGCCTTCATGCCCTCCCACAC
CAATGTGCTGAGCCACCAGAACCAAAACTCCTTCAAGAGCAGCTCTTCGC
TGGATGCGGAACCCACGCGTCCCAGCTCTAAGAACTCCTCATCCGCCCAG
GAGCGTGTGCCATCGCGCAGCAAATCAAATGCCACGCCCACAGATGGCGG
CAAGGCGGAGATTTCCGCGCACGATTCCTCATCCAGCCGAAAGACTGTCT
CCCCGTCGGGATCGTCGCAACGCGGCGCCAGTCCCATTGTGCGCTCCGGC
ATGGAGGTGCTGAACAATGCCAACGGAACCGCCCAGCATCCCAAGGAAAT
GAGCAGCATGGCTGCGGCGGCAGCAGCAGCAACAGCGGCTTACAAGGCCG
CCGGACCCTATGGGCTGAATCCCCTGTCCGCCCTGTGCTGCCCGCCCGGA
AT
MXO01349.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4491-PA | 1614 | noc-RA | 1..794 | 9..802 | 3820 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
noc-RB | 2673 | CG4491-RB | 388..1181 | 9..802 | 3880 | 99.2 | Plus |
noc-RA | 2859 | CG4491-RA | 388..1181 | 9..802 | 3880 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14491637..14492341 | 98..802 | 3435 | 99.1 | Plus |
2L | 23513712 | 2L | 14491246..14491335 | 9..98 | 450 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:33:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 1440..1507 | 134..201 | 114 | 68.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2375 | 669..741 | 108 | 63 | Plus |
MXO01349.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:39 Download gff for
MXO01349.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4491-PA | 1..794 | 9..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:28:41 Download gff for
MXO01349.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
noc-RA | 380..1181 | 1..802 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:17:01 Download gff for
MXO01349.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
noc-RA | 380..1181 | 1..802 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:17:01 Download gff for
MXO01349.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14491238..14491335 | 1..98 | 95 | -> | Plus |
2L | 14491638..14492341 | 99..802 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:28:41 Download gff for
MXO01349.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14491238..14491335 | 1..98 | 95 | -> | Plus |
arm_2L | 14491638..14492341 | 99..802 | 99 | | Plus |