Clone MXO01349 Report

Search the DGRC for MXO01349

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:49
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptnoc-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01349.3prime Sequence

712 bp (589 high quality bases) assembled on 2007-03-15

> MXO01349.3prime
ATGGTCTAGAAAGCTTGCCTGATGAGCCGCTCCCATCCTCTGGCCGTACA
TGGCGTATGGCGAGTAGTAGGGTCCCAGAGCAGCTGCCGCAGCCGCCGCG
GCAGGATTGAATGCTCCAGCGGCGCCGAAGGGCGAAGGTCCTCCAGCCAA
GGCGCCTGGTGGTGGCTTGGCGTATGGATGATACCTCGCCGCTGCCGCAG
CCGCTGACATGGGACTCAGTGGTGGTGTTGGATAGCCAGCTCGGAGAGCC
GATGGCGGAAATAGGGTTCCCAGCAGGGATTGAGCCTGCGATTGGGCCAA
GGCCGCCGCAGCAGCCGCCGGATCGGAGAGATTGCCCGTATGGGTGCGCA
GGTGGGAGAAGAGCTCGTCGGAGGTCTGGTTTCTCTCGCCGCACCAGGCA
TCGCCCACCACCCAACTGAAAACGTAGGGTGCCGAACGGGCTGCCGCCGC
GTTTGCCGCAGCAGCGGCCGCTGCCTGCGAGTATGGATGAGCTGGTGGCA
GTCCGGCGGCACTGGCCATGGCCAGGCCGTATTTCTGATGCTCGCACTGG
GTGCATCCGGCGGGGCAGGGGGCACCCATGAGCATTTGTTGCGTGTGCGC
CGAGTAGGGACATCCCTGGCAATACGGATCCTTGCAGACTGGCACTATAG
CCTCGCCGCCAGCTGGTGTCTTGATGCGCTGATAACTTATGTACGGATTG
GGCTGTCCCGCT

MXO01349.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4491-PA 1614 noc-RA 1251..1611 379..19 1805 100 Minus
CG4491-PA 1614 noc-RA 922..1234 708..396 1515 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:03
Subject Length Description Subject Range Query Range Score Percent Strand
noc-RB 2673 CG4491-RB 1305..1998 712..19 3335 98.7 Minus
noc-RA 2859 CG4491-RA 1305..1998 712..19 3335 98.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14492465..14493158 712..19 3335 98.7 Minus
Blast to na_te.dros performed on 2014-11-28 19:08:02 has no hits.

MXO01349.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:39 Download gff for MXO01349.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4491-PA 918..1614 15..712 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:38 Download gff for MXO01349.3prime
Subject Subject Range Query Range Percent Splice Strand
noc-RA 1305..2008 8..712 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:47 Download gff for MXO01349.3prime
Subject Subject Range Query Range Percent Splice Strand
noc-RA 1305..2008 8..712 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:47 Download gff for MXO01349.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 14492465..14493168 8..712 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:38 Download gff for MXO01349.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14492465..14493168 8..712 98   Minus

MXO01349.5prime Sequence

802 bp (721 high quality bases) assembled on 2007-03-15

> MXO01349.5prime
CAGTCGACATGGTTGTCTTGGAAGGAGGCGGCGGCGTTGTTACCATCGGT
AACAACCAGTACCTTCAACCGGATTATCTGGCCCCATTGCCAACGACGAT
GGACGCCAAAAAGAGTCCCTTGGCTCTGCTCGCACAGACTTGCTCCCAAA
TTGGAGCGGATTCGTCGGCAGTGAAACCCCTGCTGGCAATGGACAAGAAC
AAGACAAAGCCCGGAGCATGCTCCTCGTCGTCGAACTCGTCGAGTTCCTC
GGGCAGTGCTGAGATCTCGGCAGCCAAGTCACCCTCCGGCCAGGCCAAAT
CGCCCAAGTCGAGCACTCCAATCAGCTCGACGGCAACCAGCGCAAGTCTG
AGTAATACCAGCACCGGTGAAATCAAACTGGCCTTCATGCCCTCCCACAC
CAATGTGCTGAGCCACCAGAACCAAAACTCCTTCAAGAGCAGCTCTTCGC
TGGATGCGGAACCCACGCGTCCCAGCTCTAAGAACTCCTCATCCGCCCAG
GAGCGTGTGCCATCGCGCAGCAAATCAAATGCCACGCCCACAGATGGCGG
CAAGGCGGAGATTTCCGCGCACGATTCCTCATCCAGCCGAAAGACTGTCT
CCCCGTCGGGATCGTCGCAACGCGGCGCCAGTCCCATTGTGCGCTCCGGC
ATGGAGGTGCTGAACAATGCCAACGGAACCGCCCAGCATCCCAAGGAAAT
GAGCAGCATGGCTGCGGCGGCAGCAGCAGCAACAGCGGCTTACAAGGCCG
CCGGACCCTATGGGCTGAATCCCCTGTCCGCCCTGTGCTGCCCGCCCGGA
AT

MXO01349.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4491-PA 1614 noc-RA 1..794 9..802 3820 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:43
Subject Length Description Subject Range Query Range Score Percent Strand
noc-RB 2673 CG4491-RB 388..1181 9..802 3880 99.2 Plus
noc-RA 2859 CG4491-RA 388..1181 9..802 3880 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14491637..14492341 98..802 3435 99.1 Plus
2L 23513712 2L 14491246..14491335 9..98 450 100 Plus
Blast to na_te.dros performed 2014-11-28 23:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 1440..1507 134..201 114 68.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2375 669..741 108 63 Plus

MXO01349.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:39 Download gff for MXO01349.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4491-PA 1..794 9..802 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:28:41 Download gff for MXO01349.5prime
Subject Subject Range Query Range Percent Splice Strand
noc-RA 380..1181 1..802 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:17:01 Download gff for MXO01349.5prime
Subject Subject Range Query Range Percent Splice Strand
noc-RA 380..1181 1..802 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:17:01 Download gff for MXO01349.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 14491238..14491335 1..98 95 -> Plus
2L 14491638..14492341 99..802 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:28:41 Download gff for MXO01349.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14491238..14491335 1..98 95 -> Plus
arm_2L 14491638..14492341 99..802 99   Plus