Clone Sequence Records
MXO01350.3prime Sequence
833 bp (774 high quality bases) assembled on 2007-03-15
> MXO01350.3prime
ATGGTCTAGAAAGCTTGCATTATATTCGGCTTTGATGATTTTCTGATTTT
TTCCGAACGGATTTTCGTAGACCCTTTCGATCTCATAATGGCTCATTTTA
TTGCGATGGACGGTCAGGAGAGCTCCACTTTTGAATTTCTGTTCGCAGAC
ACCGCATTTGTAGCACATAGCCGGGACATCCGGTTTGGGGAGATTTTCCA
GTCTCTGTTGCAATTGGTTTTCGGGAATGCGTTGCAGGCGCATACGCTCT
ATATCCTCCGAACGGCGCTGGTTGACCCTAGCATTTACATAAGGATCAGC
AGCAAAATTTGCCTCTACTTCATTGCCCGGAATCACAGCAATCAGATGTC
CCTTTCGGTTACGATGGATATTCAGGTGCTAACCCCCCCCAAAGCTCTCG
CCGCACACTCCACACTGATATGGTCGCTCGCCCGTGTGGCGCCGCATATG
GATCTTAAGGTCGTTGGACTGCACAAAGCTCTTGCTGCACATTTTGCAGG
AGTACGGCCTTTGACCCGTGTGCAATCGCATGTGTCGCGCCAGCTTGTTC
TGCGAAATAAACTTCTTGGAGCAGATCTTGCACTCACTGGGACGCTCGCC
GGTGTGCTGACGCATGTGAAGACTAAGATCTTGGCTGCGCGGAAAGGCCT
TCTCGCATTGATCGCACTTGTACGGATTATCGCCCGTATGTCGCCGAATG
TGGATGGTAAGGCTAGATACGGGAAAGCTCAGGCCACAGTGCGGACAGTC
TCGCCGCTTAGCTATGCGTTTTCGGGCGGAATTGTCCGTCGTTTCTTCGG
GGTCCAATGCGATTGCGTCGGGATGGAATGCCT
MXO01350.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3281-PA | 1617 | CG3281-RA | 800..1614 | 833..19 | 3950 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3281-RA | 1870 | CG3281-RA | 893..1707 | 833..19 | 4000 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11961046..11961860 | 19..833 | 4000 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:29:45 has no hits.
MXO01350.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:40 Download gff for
MXO01350.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3281-PA | 800..1617 | 15..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:27 Download gff for
MXO01350.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3281-RA | 893..1710 | 15..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:41 Download gff for
MXO01350.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3281-RA | 893..1710 | 15..833 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:41 Download gff for
MXO01350.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11961042..11961860 | 15..833 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:27 Download gff for
MXO01350.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7786764..7787582 | 15..833 | 99 | | Plus |
MXO01350.5prime Sequence
882 bp (805 high quality bases) assembled on 2007-03-15
> MXO01350.5prime
CAGTCGACATGGACACACCGGAGATCCACGTAAATATAAGCTCGCAGACT
TGCCGCGTCTGCCTGGAGACGCACGAGACCAATCTGTATGTCCACGATGA
AATCAAATACAACGACCTTAAGTTGGAGCTCTGGCAGTTGTTGGAGGCAG
TTTCCAAATTGAAGTGGACATGGACGGACCCAAATCTGCCTATGCATCTG
TGTCAAAATTGCGCCCGCCGGCTGATCGGCGCCTATGAGTTCATCGTCGA
AGTGGAAAACGCCCATGAAACTTTACAGAATCTCTTCGAGCAACAGGAAG
TTGCTGCCAAGCCGGATGAAGTTCATGTGGATGTCGTGGAGCTTATAGAC
CAAGACGATGTGGTCAGTATGGCACAATACCTGTCTTCTCCCCCCCCCGA
ACAGCACGTGGAAATGGAGGAGAAGTATGGAGACCAAGACTGTTCAGCTT
TTACTTCAGATGTGGGCGAAGAGCCACTCTATGCGAGCGAGGATCGTGAT
GATGAGCCTGAAGACTCCTTTCAGCTGAAGCCTCGGCCAGATGAAATAGA
AAACAGAGAATTGTCGCGACCTTCCCAGCTGGGCAGTCGTTTGAACCATT
CGGCGAACTTCATCTACAAGTGCGCCGTCTGTCCGCGTGTCTTTGCCAAA
AGTGAATCTCTGACTCGTCATTTTTCCCAAGCCCACAAACTGACAGCGGA
CGTGGCCGCCATGAAGCTGGCCAACGAGAGCTGCGGCACCGGTCTGCTAA
CCTGTGAGCACTGTCCGCGGACATTCAAGCGTCAGGACACACTCCGGCGA
CACATGCAGGCATTCCATCCCGACGCAATCGCATTGGAACCCGAAGAAAC
GACGGACAATTCCCGCCCGAAAACGCATAGCT
MXO01350.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3281-PA | 1617 | CG3281-RA | 389..855 | 397..863 | 2335 | 100 | Plus |
| CG3281-PA | 1617 | CG3281-RA | 1..377 | 9..385 | 1885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3281-RA | 1870 | CG3281-RA | 93..966 | 8..882 | 4215 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11961787..11962505 | 882..163 | 3415 | 98.6 | Minus |
| 3R | 32079331 | 3R | 11962557..11962713 | 164..8 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:02:42 has no hits.
MXO01350.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:40 Download gff for
MXO01350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3281-PA | 1..873 | 9..882 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:43 Download gff for
MXO01350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3281-RA | 93..966 | 8..882 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:12 Download gff for
MXO01350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3281-RA | 93..966 | 8..882 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:12 Download gff for
MXO01350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11961787..11962503 | 165..882 | 98 | <- | Minus |
| 3R | 11962557..11962713 | 8..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:43 Download gff for
MXO01350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7787509..7788225 | 165..882 | 98 | <- | Minus |
| arm_3R | 7788279..7788435 | 8..164 | 100 | | Minus |
