MXO01351.3prime Sequence
830 bp (766 high quality bases) assembled on 2007-03-15
> MXO01351.3prime
ATGGTCTAGAAAGCTTGCTACGCTGACCAGCTTGGACGGCTCGGCGGTGG
GCGTGGGCAGCTCCAGCGGGTGCTTGTTCGTGGAGGAGCTGTTCGGGACG
AGGGGTCCGGAGACGGGCGTTAGCCCAGTGCCGCCGTCCATCAGGGAGTC
AAAGTTGAAGGTGCCGGTCGAGGGCGTCTGGATGGGCACGCCCTGGATCT
GCGTGGGCCCACCCGCCTTGTTGTTGGCCATGGTGAGGTGCATCTGGCCC
AGTGGACGCTGGAAGGCCAACGTGTTGGGCCGCTCCTTAGGCACCTTGTT
ATGCGCATTCAGCGTGGGAGAGTTCTTGTTGTTGCCGATGCTGTTGATGT
TGTTGATGCTGCTGCCGTTGGAGGTCATTTTTTCCCCCCTCCCGAATCCG
CCGGGCGCCGTGCTCAAGATCGGCGTCTGCAGAGATCCCGACGAGGCGCC
GGTGGGTGTTAATATCGTGGACAAGTGAACGTGCGGCATCGTGGACATGG
GCGGCAAGGTGATGCGCTTGCTGGGCGGTGGACCGTCCTGGTCCAGGCTG
GATCCTGAGTCGATGGCGCCATCGAGTGGCTCGTCCTTGATGTGCATCAG
CAGGCTATCGATGTTCGCCGCCGGCTTGAGATCCAAGGGTGAATTGCTCC
TCCCGGTGGAGTTCAGCGTGGCGTCCATGCCGGTGATCGTGCCGTTGCTG
CTGTCGTTGCTGTTGTGGTTGTGGTGGCTGCTCGCGCCGCTGCCGCTGCT
CCCGGCGCTCAGGAGTCCGGCCGGGGCAATCAGACCGTTGCAGGTGACCA
CGCTCAGCATGTCCGAGCGAATCTTTTGGC
MXO01351.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33956-PD | 2169 | kay-RD | 1355..1793 | 830..392 | 1945 | 97.7 | Minus |
| CG33956-PA | 1788 | kay-RA | 974..1412 | 830..392 | 1945 | 97.7 | Minus |
| CG33956-PB | 1641 | kay-RB | 827..1265 | 830..392 | 1945 | 97.7 | Minus |
| CG33956-PE | 1854 | kay-RE | 1040..1478 | 830..392 | 1945 | 97.7 | Minus |
| CG33956-PD | 2169 | kay-RD | 1808..2163 | 377..22 | 1605 | 98 | Minus |
| CG33956-PA | 1788 | kay-RA | 1427..1782 | 377..22 | 1605 | 98 | Minus |
| CG33956-PB | 1641 | kay-RB | 1280..1635 | 377..22 | 1605 | 98 | Minus |
| CG33956-PE | 1854 | kay-RE | 1493..1848 | 377..22 | 1605 | 98 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kay-RG | 3738 | CG33956-RG | 1835..2643 | 830..22 | 3625 | 96.5 | Minus |
| kay-RF | 4574 | CG33956-RF | 2671..3479 | 830..22 | 3625 | 96.5 | Minus |
| kay-RB | 3194 | CG33956-RB | 1291..2099 | 830..22 | 3625 | 96.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29792210..29793018 | 830..22 | 3625 | 96.5 | Minus |
Blast to na_te.dros performed 2014-11-28 22:02:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2353..2468 | 759..644 | 193 | 62.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2907..3024 | 754..646 | 164 | 64.4 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1073..1161 | 754..669 | 159 | 66.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2409 | 370..322 | 155 | 79.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2472..2528 | 370..314 | 150 | 73.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2419..2478 | 381..322 | 147 | 71.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1578 | 361..322 | 146 | 85 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1505..1564 | 736..678 | 144 | 73.3 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1140 | 755..678 | 136 | 68.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2869..2974 | 759..659 | 132 | 61.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2582..2662 | 767..690 | 127 | 65.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2764..2848 | 732..645 | 126 | 63.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1489..1551 | 383..322 | 123 | 68.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1531..1589 | 750..695 | 116 | 71.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2841 | 721..667 | 113 | 67.3 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 1555..1589 | 355..321 | 112 | 80 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6861..6909 | 375..327 | 110 | 69.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2759..2832 | 752..679 | 109 | 60.8 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3596..3622 | 716..690 | 108 | 88.9 | Minus |
MXO01351.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:41 Download gff for
MXO01351.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33956-PB | 827..1641 | 15..830 | 96 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:45 Download gff for
MXO01351.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kay-RB | 1291..2105 | 15..830 | 96 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:14 Download gff for
MXO01351.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kay-RB | 1291..2105 | 15..830 | 96 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:14 Download gff for
MXO01351.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29792210..29793024 | 15..830 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:45 Download gff for
MXO01351.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25617932..25618746 | 15..830 | 96 | | Minus |
MXO01351.5prime Sequence
699 bp (626 high quality bases) assembled on 2007-03-15
> MXO01351.5prime
CAGTCGACATGACGCTGGACAGCTACCACATCTTCAACGATGAGTACTTG
TTCAACATGCCGCTGTCGCCGCTGCCAAAAGTGCTCGGCAACTTTGAGAC
CGGCCAGAGTGTTCTCACACTGACGACGCCCACGTTGACGCCGACCACCA
CGCGCAACATCGAGGACACACTGGGCCACTTGCTCTCGGACACGCAGACC
GATCGTGTGGCTGGTTGCGCGGGATTCGCAGTGCCAAAGGTGCTACCCAA
CGCCATTGATGTCCTGGGCATGGGTATTCCCACCGGTGTTTCGTCGCTCC
CACTTCAGCAGACATTCGATTTGAGCCTGGGGCAGGGCAGCGAGTCCGAG
GACTCCAACGCTTCGTACAACGATACGCAGATGATTTACCCCCCCCCCAC
GACCGATACTTCAAGTGCCCATAAAGACAGCACCTCGTACCAAGCTGGCC
ACATCATGGCGGGCAGCGTGAACGGCGGCGGTGTCAACAACTTCTCCAAT
GTCCTGGCCGCCGTGAGCTCTAGCCGCGGATCGGCGTCGGTGGGCAGCAG
CAACGCGAATACCTCAAATACGCCGGCTCGTCGTGGCGGCGGCAGACGCC
CCAACCGGTCGACGAACATGACCCCGGAGGAGGAGCAGAAGCGGGCCGTG
CGCCGGGAGCGGAACAAACAGGCGGCGGCCCGTTGCCGCAAGAGGCGCG
MXO01351.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33956-PB | 1641 | kay-RB | 1..376 | 9..384 | 1805 | 99.2 | Plus |
| CG33956-PE | 1854 | kay-RE | 288..589 | 83..384 | 1460 | 99.3 | Plus |
| CG33956-PD | 2169 | kay-RD | 604..904 | 84..384 | 1455 | 99.3 | Plus |
| CG33956-PA | 1788 | kay-RA | 223..523 | 84..384 | 1455 | 99.3 | Plus |
| CG33956-PB | 1641 | kay-RB | 390..691 | 398..699 | 1435 | 99 | Plus |
| CG33956-PE | 1854 | kay-RE | 603..904 | 398..699 | 1435 | 99 | Plus |
| CG33956-PD | 2169 | kay-RD | 918..1219 | 398..699 | 1435 | 99 | Plus |
| CG33956-PA | 1788 | kay-RA | 537..838 | 398..699 | 1435 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kay-RB | 3194 | CG33956-RB | 465..1155 | 9..699 | 3200 | 97.5 | Plus |
| kay-RF | 4574 | CG33956-RF | 1919..2535 | 83..699 | 2845 | 97.4 | Plus |
| kay-RG | 3738 | CG33956-RG | 1084..1699 | 84..699 | 2840 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29791392..29791693 | 83..384 | 1480 | 99.3 | Plus |
| 3R | 32079331 | 3R | 29791787..29792074 | 412..699 | 1395 | 99 | Plus |
| 3R | 32079331 | 3R | 29783073..29783147 | 9..83 | 360 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:29:56 has no hits.
MXO01351.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:41 Download gff for
MXO01351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33956-PB | 1..691 | 9..699 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:34 Download gff for
MXO01351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kay-RB | 458..1155 | 1..699 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:47 Download gff for
MXO01351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kay-RB | 458..1155 | 1..699 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:47 Download gff for
MXO01351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29783066..29783147 | 1..83 | 93 | -> | Plus |
| 3R | 29791393..29791720 | 84..411 | 96 | -> | Plus |
| 3R | 29791787..29792074 | 412..699 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:34 Download gff for
MXO01351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25608788..25608869 | 1..83 | 93 | -> | Plus |
| arm_3R | 25617115..25617442 | 84..411 | 96 | -> | Plus |
| arm_3R | 25617509..25617796 | 412..699 | 98 | | Plus |
