Clone Sequence Records
MXO01352.3prime Sequence
795 bp (762 high quality bases) assembled on 2007-03-15
> MXO01352.3prime
ATGGTCTAGAAAGCTTGCAAGACCCATATTATCCAAGCGCAGACGTCCAT
CGTGTTCTGTGAGGTAGAGGGTGTCGGCTAAACATTGCTCTGTGATCAGC
TCCTCCACGCGATCGTGCATCCCCTTGGCTTTGTGCTCGACGAGCACCTC
GGGATACTTGAAGGCGGGTCCGAAGTTTACGCTGACCGTTGCACTTTTGT
GGATCGAGATGGCCGGGAAATAGCTGCCGGCATAAATGTCTTCGAATGCC
ACACCCTGCGATTGACCGTTCTTAAAGAACTCGATGCGGCTGCCCTGCAG
GATGTGCAGATTTTTCAGGGTTTCTGTGATCTTGTCCTTATCCTCGTAGT
ACAGATGAGACTTGAACTTGACCAGGGGCCTATCTCTCCCCCGCGTTGGG
CAGATAGTCGAGCGACGCCTCCTCTGGCAGCTCTATGAGGAATCCCAATG
TATCGCCCTCCACATAGGCATCACTGTAGTGTTTGCCATGGCTCTCGGTA
AACTTGGTGCCCTTGCGAGATCTCCAGGAGTAACCGAACTTGTCGTATCC
CAATGGAGCCTGCAAGTTGCCGTACTCCCGGCCCCAGCCAAGTCGCGTGG
CAGCTCCGTCGGGCATCTCTTCGATGGTGACCTCAAAGTACCAGCATCCC
CGGTTCACAGAGTGTGTGGCTCGGACCATGCAGTAACCACGTTCGCCCGT
CACCGCCAACCGATCCTCGCTTATTTTCAGCTGTGGTGCCCGATCATGCA
GCGCCAGGAGCACAGAATGTGGCACCAGGATGCGGTAGAGCCAGC
MXO01352.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6677-PA | 1872 | ash2-RA | 1094..1494 | 795..395 | 2005 | 100 | Minus |
| CG6677-PB | 1053 | ash2-RB | 275..675 | 795..395 | 2005 | 100 | Minus |
| CG6677-PC | 1671 | ash2-RC | 893..1293 | 795..395 | 2005 | 100 | Minus |
| CG6677-PA | 1872 | ash2-RA | 1508..1869 | 380..19 | 1810 | 100 | Minus |
| CG6677-PB | 1053 | ash2-RB | 689..1050 | 380..19 | 1810 | 100 | Minus |
| CG6677-PC | 1671 | ash2-RC | 1307..1668 | 380..19 | 1810 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ash2-RE | 1271 | CG6677-RE | 319..1094 | 795..19 | 3755 | 99 | Minus |
| ash2-RC | 1949 | CG6677-RC | 997..1772 | 795..19 | 3755 | 99 | Minus |
| ash2-RB | 1413 | CG6677-RB | 461..1236 | 795..19 | 3755 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24652310..24652575 | 660..395 | 1330 | 100 | Minus |
| 3R | 32079331 | 3R | 24652781..24653039 | 379..121 | 1295 | 100 | Minus |
| 3R | 32079331 | 3R | 24652107..24652241 | 795..661 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 24653097..24653199 | 121..19 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:08:09 has no hits.
MXO01352.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:41 Download gff for
MXO01352.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6677-PC | 893..1671 | 18..795 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:40 Download gff for
MXO01352.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ash2-RB | 461..1236 | 19..795 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:50 Download gff for
MXO01352.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ash2-RB | 461..1236 | 19..795 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:50 Download gff for
MXO01352.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24653098..24653199 | 19..120 | 100 | | Minus |
| 3R | 24652310..24652590 | 379..660 | 97 | -> | Minus |
| 3R | 24652782..24653039 | 121..378 | 100 | -> | Minus |
| 3R | 24652107..24652241 | 661..795 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:40 Download gff for
MXO01352.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20477829..20477963 | 661..795 | 100 | -> | Minus |
| arm_3R | 20478032..20478312 | 379..660 | 97 | -> | Minus |
| arm_3R | 20478504..20478761 | 121..378 | 100 | -> | Minus |
| arm_3R | 20478820..20478921 | 19..120 | 100 | | Minus |
MXO01352.5prime Sequence
717 bp (716 high quality bases) assembled on 2007-03-15
> MXO01352.5prime
CAGTCGACATGGAGGACAGCCAAATGCATTCAATCTCAACGACAGAGTCC
AGCTCCGAGGTGAACTTCACTGCGGAGGAGGATAAATCGCAGGAAACGCG
TTCCGCAGCCGGCGTTTGTTACTGCGGCAAGGAGCGCAATCTCAATATTG
TGGAGCTGCTGTGTGCCACCTGTTCAGGCTGGGTGCACGAGATCTGAGTT
TCCTACCAGCTTGGTAAGGGTAAACTTCTGCCCTTCATCACCAACTATGT
GTTCGTCTGTAAAAATTGCTCTGCCAGCGGATTGGAGAGCTTTCGCAAGA
GCCAGGCTACCATATCCCAGATGTGCCACTGTGTTTTTGCCAACATGCAG
CAGGCGGCTTCCAGGGACGGACGTCGCCAGATTTTTTTTTCCCCCCCCAA
GGAGATCATACCGTACATCGAAAAAAAGAGGGAGGCCATGACCACCATGC
CACGCAGACTCACCCAGTCCTGGTACAGCACCGTCCAGCGATCTTTGGTC
AAGGATGTGCAGACCCTGTTCACCTACGAGGAGCATGCGGAACATGGCGC
CATGTACGGACTATTCCATCAGGATCTGCGAATCATCAAGCCCAACTACG
AGAGCATGAGCAAGAGCGGCGCCCTGCGACTCACCGACGATGGATATACT
CAAGCTTCCCTCTCCAAAAACAATCGACAGAAAAGGAAATTTCCCGGCAC
GGATTCGGGTCCCACGG
MXO01352.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6677-PA | 1872 | ash2-RA | 623..910 | 430..717 | 1440 | 100 | Plus |
| CG6677-PC | 1671 | ash2-RC | 422..709 | 430..717 | 1440 | 100 | Plus |
| CG6677-PA | 1872 | ash2-RA | 233..526 | 40..333 | 1395 | 98.9 | Plus |
| CG6677-PC | 1671 | ash2-RC | 32..325 | 40..333 | 1395 | 98.9 | Plus |
| CG6677-PB | 1053 | ash2-RB | 29..91 | 655..717 | 315 | 100 | Plus |
| CG6677-PA | 1872 | ash2-RA | 530..576 | 337..383 | 235 | 100 | Plus |
| CG6677-PC | 1671 | ash2-RC | 329..375 | 337..383 | 235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ash2-RC | 1949 | CG6677-RC | 105..813 | 9..717 | 3140 | 96.2 | Plus |
| ash2-RE | 1271 | CG6677-RE | 73..135 | 655..717 | 315 | 100 | Plus |
| ash2-RB | 1413 | CG6677-RB | 215..277 | 655..717 | 315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24650650..24650994 | 310..654 | 1455 | 94.8 | Plus |
| 3R | 32079331 | 3R | 24650404..24650589 | 124..309 | 885 | 98.4 | Plus |
| 3R | 32079331 | 3R | 24650229..24650344 | 9..124 | 490 | 94.8 | Plus |
| 3R | 32079331 | 3R | 24651859..24651923 | 653..717 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:08:41 has no hits.
MXO01352.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:42 Download gff for
MXO01352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6677-PC | 1..709 | 9..717 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:45 Download gff for
MXO01352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ash2-RC | 98..813 | 1..717 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:24 Download gff for
MXO01352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ash2-RC | 98..813 | 1..717 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:24 Download gff for
MXO01352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24650222..24650344 | 1..124 | 92 | -> | Plus |
| 3R | 24650405..24650589 | 125..309 | 98 | -> | Plus |
| 3R | 24650650..24650994 | 310..654 | 94 | -> | Plus |
| 3R | 24651861..24651923 | 655..717 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:45 Download gff for
MXO01352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20475944..20476066 | 1..124 | 92 | -> | Plus |
| arm_3R | 20476127..20476311 | 125..309 | 98 | -> | Plus |
| arm_3R | 20476372..20476716 | 310..654 | 94 | -> | Plus |
| arm_3R | 20477583..20477645 | 655..717 | 100 | | Plus |
