Clone MXO01353 Report

Search the DGRC for MXO01353

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:53
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG1832-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01353.3prime Sequence

838 bp (789 high quality bases) assembled on 2007-03-15

> MXO01353.3prime
ATGGTCTAGAAAGCTTGCTACCCCACCGATAATCACTTCCTGTTGGGCCT
CATCCTCCATGTCAGGAATCTCCTGCTTATGCACTATCATCCCATCGCTG
CTGGTCTGGCGAGGAGCAGTTTGGCCGTACTTTTGGTGTATGCCGCGGTG
ACGCTTGAGTGCAAAACGATCAGCGAATGCTGCAGAGCAAATCTCGCACT
TGTAGGGTTTTTCTCCGGAGTGCACCTTTGCGTGGTTCTTAAGGTGCGCC
GCCTGAGAAAAGGCCGATCCACAAATTTCACACTTGTATGGCTTTTCGCC
CGTGTGAATGCGCCTATGATTCCAAAGATTAGCGTGGCGCGCAAATCCTT
TGTCGCAAACACCGCACACATAGGGCCGCTCTTCTCCCCCCCCCCGTTCA
TGGTTCTTGAGGTGTGAAAAAAGAGAAAACTGCATGCCGCAGGTTTGGCA
TTTATAGGGTTTCTCGCCTGTATGAATGCGCGCGTGGTTTTTCAAATATA
CGGCTTTAGCAAAGGCCAATCCACAGATGCTGCACTTGTAGTTTTTTTCA
CCGCTGTGCAGCTTTTTATGGGACCACAGACTTGAGTAACGTGAAAACAG
ACCACCACATATATTACAACTGAAGGGTTTGGACGGATTTTCAGTTTTAA
CAGTAACTGATTGCTTTACCGATCCGCCCACCCCGCTGTGTGAAGCATGG
GAGTGCTGCCCCACTAGCACCACGCCGGAGCCATTGCATTTCTGGCATTT
GGTCATCTGCTGGGAATTTCGTTTTTTCACAGGATGATGGCCAGACCCAC
TGCTCGCCTCTCGCTTTGGCGTTGTACCGCCAGTCTGT

MXO01353.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1832-PA 1686 CG1832-RA 864..1277 838..425 2070 100 Minus
CG1832-PA 1686 CG1832-RA 1321..1680 381..22 1775 99.7 Minus
CG1832-PB 1701 CG1832-RB 1336..1695 381..22 1775 99.7 Minus
CG1832-PB 1701 CG1832-RB 1077..1292 640..425 1080 100 Minus
CG1832-PB 1701 CG1832-RB 864..1061 838..641 990 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
Clamp-RA 2636 CG1832-RA 1228..2044 838..22 3830 97.9 Minus
Clamp-RB 2897 CG1832-RB 1228..2059 838..22 3670 96.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22166558..22166991 22..455 1900 95.9 Plus
2L 23513712 2L 22167303..22167500 641..838 990 100 Plus
2L 23513712 2L 22167050..22167238 452..640 945 100 Plus
Blast to na_te.dros performed on 2014-11-28 21:06:06 has no hits.

MXO01353.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:42 Download gff for MXO01353.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1832-PA 864..1686 18..838 97   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:27 Download gff for MXO01353.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1832-RA 1228..2047 19..838 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:34 Download gff for MXO01353.3prime
Subject Subject Range Query Range Percent Splice Strand
Clamp-RA 1228..2047 19..838 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:34 Download gff for MXO01353.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 22166555..22166987 19..451 95 <- Plus
2L 22167050..22167238 452..640 100 <- Plus
2L 22167303..22167500 641..838 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:27 Download gff for MXO01353.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22166555..22166987 19..451 95 <- Plus
arm_2L 22167050..22167238 452..640 100 <- Plus
arm_2L 22167303..22167500 641..838 100   Plus

MXO01353.5prime Sequence

815 bp (720 high quality bases) assembled on 2007-03-15

> MXO01353.5prime
CAGTCGACATGGAAGACCTTACCAAAACCATTATCTTCACAAATGCCATT
AATGGGCAACCGGCCACAATTCAATACCAGACGGCGGATGGCACCATTCT
TAAACAGCCCAAAATAGAGGGCCAAAAAACGGAGCAGCAGCCTACCTTCT
ATTACACGACAAATGGCAATGGCGGTACCGTCAATCTCGCACAGCTGGCC
ACCACAGACGACAATAAGACGTGTTATATAGCCCAGCCCGTGGGCGGATA
CAATTACGCCCTGGTCAACGGAATGCCTCTCAATCAGGGTGCAGCTCTTG
GCATCGCCACGGTAGACGCACAAGGCCGCATCCAGATTGTCAATCAAAAT
AAGCCAATTGCAGCTAACACCATATCCAACATAAGCTTTATTTGTCCCCC
CCCCCCCAGATATGTTCCCTCATTTGGAACAAAAAAATGCTCATAAGCGG
ATGCATACAGACGGGGAACAGCAGCAACAACAGCAACATAACGCCCAAGC
GGGCGGCGATTCTATTGCCGTGGTCAGCGCGCAGGGGCTTGTGCAGGCAC
AGAACATTATTGGAAATGGTCAGATGGGCCAGATACAGATTGTGTCTTCT
GACACGCTGGAGCCGGTTCAGCAATCTGTAATGCAGCAGCAGCAACATGA
GTCAAAGGCAAGCAAGTGCATAAATTGTGGAAGCTCTATGCTGCAGCAGT
CCAAACGCAAAGGTCCAAAGCAGGTGCGCTGCGAGTCCTGCATGCAGGCT
GAACAAACAGCGCAACAACAACAGCAGCTCTTCGTCGCCCAAGACGGTCA
AATGGCGCATCCCGT

MXO01353.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG1832-PA 1686 CG1832-RA 427..806 436..815 1900 100 Plus
CG1832-PB 1701 CG1832-RB 427..806 436..815 1900 100 Plus
CG1832-PA 1686 CG1832-RA 1..382 9..390 1885 99.7 Plus
CG1832-PB 1701 CG1832-RB 1..382 9..390 1885 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
Clamp-RB 2897 CG1832-RB 364..1170 8..815 3745 97.6 Plus
Clamp-RA 2636 CG1832-RA 364..1170 8..815 3745 97.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22167635..22168026 798..407 1870 98.5 Minus
2L 23513712 2L 22168120..22168320 365..165 1005 100 Minus
2L 23513712 2L 22168379..22168536 165..8 775 99.4 Minus
Blast to na_te.dros performed 2014-11-28 21:44:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7931..7982 435..487 109 72.2 Plus
TART-C 11124 TART-C TARTC 11124bp 9375..9426 435..487 109 72.2 Plus
roo 9092 roo DM_ROO 9092bp 1056..1134 413..488 108 63.3 Plus

MXO01353.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:43 Download gff for MXO01353.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1832-PB 1..806 9..815 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:30 Download gff for MXO01353.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1832-RA 364..1170 8..815 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:39 Download gff for MXO01353.5prime
Subject Subject Range Query Range Percent Splice Strand
Clamp-RA 364..1170 8..815 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:39 Download gff for MXO01353.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 22168380..22168536 8..164 99   Minus
2L 22167558..22167576 797..815 100 <- Minus
2L 22167637..22168066 366..796 95 <- Minus
2L 22168120..22168320 165..365 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:30 Download gff for MXO01353.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22168120..22168320 165..365 100 <- Minus
arm_2L 22167558..22167576 797..815 100 <- Minus
arm_2L 22167637..22168066 366..796 95 <- Minus
arm_2L 22168380..22168536 8..164 99   Minus