MXO01353.3prime Sequence
838 bp (789 high quality bases) assembled on 2007-03-15
> MXO01353.3prime
ATGGTCTAGAAAGCTTGCTACCCCACCGATAATCACTTCCTGTTGGGCCT
CATCCTCCATGTCAGGAATCTCCTGCTTATGCACTATCATCCCATCGCTG
CTGGTCTGGCGAGGAGCAGTTTGGCCGTACTTTTGGTGTATGCCGCGGTG
ACGCTTGAGTGCAAAACGATCAGCGAATGCTGCAGAGCAAATCTCGCACT
TGTAGGGTTTTTCTCCGGAGTGCACCTTTGCGTGGTTCTTAAGGTGCGCC
GCCTGAGAAAAGGCCGATCCACAAATTTCACACTTGTATGGCTTTTCGCC
CGTGTGAATGCGCCTATGATTCCAAAGATTAGCGTGGCGCGCAAATCCTT
TGTCGCAAACACCGCACACATAGGGCCGCTCTTCTCCCCCCCCCCGTTCA
TGGTTCTTGAGGTGTGAAAAAAGAGAAAACTGCATGCCGCAGGTTTGGCA
TTTATAGGGTTTCTCGCCTGTATGAATGCGCGCGTGGTTTTTCAAATATA
CGGCTTTAGCAAAGGCCAATCCACAGATGCTGCACTTGTAGTTTTTTTCA
CCGCTGTGCAGCTTTTTATGGGACCACAGACTTGAGTAACGTGAAAACAG
ACCACCACATATATTACAACTGAAGGGTTTGGACGGATTTTCAGTTTTAA
CAGTAACTGATTGCTTTACCGATCCGCCCACCCCGCTGTGTGAAGCATGG
GAGTGCTGCCCCACTAGCACCACGCCGGAGCCATTGCATTTCTGGCATTT
GGTCATCTGCTGGGAATTTCGTTTTTTCACAGGATGATGGCCAGACCCAC
TGCTCGCCTCTCGCTTTGGCGTTGTACCGCCAGTCTGT
MXO01353.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1832-PA | 1686 | CG1832-RA | 864..1277 | 838..425 | 2070 | 100 | Minus |
CG1832-PA | 1686 | CG1832-RA | 1321..1680 | 381..22 | 1775 | 99.7 | Minus |
CG1832-PB | 1701 | CG1832-RB | 1336..1695 | 381..22 | 1775 | 99.7 | Minus |
CG1832-PB | 1701 | CG1832-RB | 1077..1292 | 640..425 | 1080 | 100 | Minus |
CG1832-PB | 1701 | CG1832-RB | 864..1061 | 838..641 | 990 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Clamp-RA | 2636 | CG1832-RA | 1228..2044 | 838..22 | 3830 | 97.9 | Minus |
Clamp-RB | 2897 | CG1832-RB | 1228..2059 | 838..22 | 3670 | 96.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22166558..22166991 | 22..455 | 1900 | 95.9 | Plus |
2L | 23513712 | 2L | 22167303..22167500 | 641..838 | 990 | 100 | Plus |
2L | 23513712 | 2L | 22167050..22167238 | 452..640 | 945 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:06:06 has no hits.
MXO01353.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:42 Download gff for
MXO01353.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1832-PA | 864..1686 | 18..838 | 97 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:27 Download gff for
MXO01353.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1832-RA | 1228..2047 | 19..838 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:34 Download gff for
MXO01353.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clamp-RA | 1228..2047 | 19..838 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:34 Download gff for
MXO01353.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22166555..22166987 | 19..451 | 95 | <- | Plus |
2L | 22167050..22167238 | 452..640 | 100 | <- | Plus |
2L | 22167303..22167500 | 641..838 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:27 Download gff for
MXO01353.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22166555..22166987 | 19..451 | 95 | <- | Plus |
arm_2L | 22167050..22167238 | 452..640 | 100 | <- | Plus |
arm_2L | 22167303..22167500 | 641..838 | 100 | | Plus |
MXO01353.5prime Sequence
815 bp (720 high quality bases) assembled on 2007-03-15
> MXO01353.5prime
CAGTCGACATGGAAGACCTTACCAAAACCATTATCTTCACAAATGCCATT
AATGGGCAACCGGCCACAATTCAATACCAGACGGCGGATGGCACCATTCT
TAAACAGCCCAAAATAGAGGGCCAAAAAACGGAGCAGCAGCCTACCTTCT
ATTACACGACAAATGGCAATGGCGGTACCGTCAATCTCGCACAGCTGGCC
ACCACAGACGACAATAAGACGTGTTATATAGCCCAGCCCGTGGGCGGATA
CAATTACGCCCTGGTCAACGGAATGCCTCTCAATCAGGGTGCAGCTCTTG
GCATCGCCACGGTAGACGCACAAGGCCGCATCCAGATTGTCAATCAAAAT
AAGCCAATTGCAGCTAACACCATATCCAACATAAGCTTTATTTGTCCCCC
CCCCCCCAGATATGTTCCCTCATTTGGAACAAAAAAATGCTCATAAGCGG
ATGCATACAGACGGGGAACAGCAGCAACAACAGCAACATAACGCCCAAGC
GGGCGGCGATTCTATTGCCGTGGTCAGCGCGCAGGGGCTTGTGCAGGCAC
AGAACATTATTGGAAATGGTCAGATGGGCCAGATACAGATTGTGTCTTCT
GACACGCTGGAGCCGGTTCAGCAATCTGTAATGCAGCAGCAGCAACATGA
GTCAAAGGCAAGCAAGTGCATAAATTGTGGAAGCTCTATGCTGCAGCAGT
CCAAACGCAAAGGTCCAAAGCAGGTGCGCTGCGAGTCCTGCATGCAGGCT
GAACAAACAGCGCAACAACAACAGCAGCTCTTCGTCGCCCAAGACGGTCA
AATGGCGCATCCCGT
MXO01353.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1832-PA | 1686 | CG1832-RA | 427..806 | 436..815 | 1900 | 100 | Plus |
CG1832-PB | 1701 | CG1832-RB | 427..806 | 436..815 | 1900 | 100 | Plus |
CG1832-PA | 1686 | CG1832-RA | 1..382 | 9..390 | 1885 | 99.7 | Plus |
CG1832-PB | 1701 | CG1832-RB | 1..382 | 9..390 | 1885 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Clamp-RB | 2897 | CG1832-RB | 364..1170 | 8..815 | 3745 | 97.6 | Plus |
Clamp-RA | 2636 | CG1832-RA | 364..1170 | 8..815 | 3745 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22167635..22168026 | 798..407 | 1870 | 98.5 | Minus |
2L | 23513712 | 2L | 22168120..22168320 | 365..165 | 1005 | 100 | Minus |
2L | 23513712 | 2L | 22168379..22168536 | 165..8 | 775 | 99.4 | Minus |
Blast to na_te.dros performed 2014-11-28 21:44:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7931..7982 | 435..487 | 109 | 72.2 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 9375..9426 | 435..487 | 109 | 72.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1056..1134 | 413..488 | 108 | 63.3 | Plus |
MXO01353.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:43 Download gff for
MXO01353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1832-PB | 1..806 | 9..815 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:30 Download gff for
MXO01353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1832-RA | 364..1170 | 8..815 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:39 Download gff for
MXO01353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clamp-RA | 364..1170 | 8..815 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:39 Download gff for
MXO01353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22168380..22168536 | 8..164 | 99 | | Minus |
2L | 22167558..22167576 | 797..815 | 100 | <- | Minus |
2L | 22167637..22168066 | 366..796 | 95 | <- | Minus |
2L | 22168120..22168320 | 165..365 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:30 Download gff for
MXO01353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22168120..22168320 | 165..365 | 100 | <- | Minus |
arm_2L | 22167558..22167576 | 797..815 | 100 | <- | Minus |
arm_2L | 22167637..22168066 | 366..796 | 95 | <- | Minus |
arm_2L | 22168380..22168536 | 8..164 | 99 | | Minus |