Clone MXO01354 Report

Search the DGRC for MXO01354

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:54
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG12219-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01354.3prime Sequence

875 bp (788 high quality bases) assembled on 2007-03-15

> MXO01354.3prime
ATGGTCTAGAAAGCTTGCGACTGCGGCCGCAGGACCCGGCTGAGCCTGTG
CCTGTGACGGGTTGGTGTGCTGCATCTGCTCCTGGACGCCAGCCTTGGCC
GCCGAGCGCGTGGCTCGCGATCTCTCCCATTCCGCTTTGTGCTTGCGCTT
AGTGTGATGGTACATATTCGACTTGGAGCGGAATTCCGTGGGACAGAAGG
CGCAGGTGTGCAGCTTGACGCCCGTGTGCGTGGCAAAGTGCTCCTCCAAA
TATCGCTTCATCTTGAAGCTTTTGCCGCACACATCGCATGCGTACTTGGG
CTTGCTCAGGCAGCGATGATTCTGGCCTTGAAGCTCACCGCAATTGGGAC
AAATGATCGAAACGGGTGCCGCATGGATGTTTTCCTCCCCCCCACCCGCC
GGTCGTTTATCCGTCTCAAAAGGAGGGTGGTTGCCATAGGGATGCGCCAT
CATTGTCCCAGTTGTCGTTGTCGTCGTTGTTGTGGCACTGCTCGTTCCTA
CGGCCGCCGCTGCAGCCGCCGTTGCCGACATGACAGCAAAGAGTTGTTCC
TGATGTTGCTGTTGCAAAAGGCTCGCACACAGACGCTGCTGCAGGCTATC
CGGTTGTCCTGGCGGATTGCCCGTTAGCGAAGCGGCTGCCACGACAGCAG
CGGCTACCGCATTATAATTGGCCAGTATGAGCTCGTTCTCCTTGAGCCTT
TTCTGCGGCGAATCCTCGTCGCTAACATCGCTGCCCTCCGTGTGCTGGAC
CTTTTTGGGCGAGTGCGTCTTTCGGCGACTGGATCGATTGCTTGAGCCCC
GACTACCGGATGGCGGTGTCTTGGTTATGGTGAGGTTCATGGCCTCGCTG
GGTTGACTCTTGATTACCGACAGCG

MXO01354.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG12219-PA 1689 CG12219-RA 830..1309 875..396 2300 99.1 Minus
CG12219-PA 1689 CG12219-RA 1326..1683 379..22 1740 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12219-RA 2018 CG12219-RA 916..1769 875..22 4030 98.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6299863..6300304 434..875 2195 99.8 Plus
X 23542271 X 6299303..6299526 22..245 1120 100 Plus
X 23542271 X 6299607..6299798 243..434 735 92.2 Plus
Blast to na_te.dros performed on 2014-11-28 20:31:56 has no hits.

MXO01354.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:43 Download gff for MXO01354.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12219-PA 830..1689 18..875 97   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:18 Download gff for MXO01354.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12219-RA 916..1772 19..875 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:39 Download gff for MXO01354.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12219-RA 916..1772 19..875 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:39 Download gff for MXO01354.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6299300..6299524 19..243 99 <- Plus
X 6299608..6299797 244..433 92 <- Plus
X 6299863..6300304 434..875 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:18 Download gff for MXO01354.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6193333..6193557 19..243 99 <- Plus
arm_X 6193641..6193830 244..433 92 <- Plus
arm_X 6193896..6194337 434..875 99   Plus

MXO01354.5prime Sequence

729 bp (728 high quality bases) assembled on 2007-03-15

> MXO01354.5prime
CAGTCGACATGATCTGTCGCCTGTGCCTGAACGCGCTCGACGAGCAGAGC
GCGGTGCTACTGTTCGACGGCGCCGGCGGAGCCAGTGCGCCCGCACCGGA
TGACGAGGACGACGGCAAGGCGATGCCAGAGAGCTACCTGGTCCAACTGA
TCTCGATTCACTTGTACCTCTGCCTCTCCCGCGACGACGCCATCTCCACC
TGCATCTGCACCGAGTGCTGCTCGCAACTGGAGAGCTTCCACAACTTCTG
GAAGCTGGTGGAGCTAAAGCAGACGACGCTGTGCAGCCAGTTTTTGGCTA
TCGATTGTGATGTCAACTGGTCGGAGGATGGTTGCGAAACGCAGTTGGAT
GCGCAACCGCAATTGCTACTGGAGCCGGCGGTTTTTCCCCCCCCCCCCCC
CTCCCACAACGGCGAATAAATAAAAAAGAATGTTCTGCGAGAAGTCATTT
AAGATGCGCCGCTACCTGGAGGAGCACATAGCCACCCACACCGGCGACCG
ACCCATTGCGTGTCCCTACTGCGAAATGGCCTTCCGCTGCCGTTCGAATA
TGTACACCCATGTGAAGAGCAAGCACACCACGCAGTGGCTAAAGGCTCGC
GAAGAGCGGGATGCGGCCAAGTCGAATCAGAATCACACGACGCCGGAGGA
GACCGCTCCAGCAGTTTTAGTTCCTGTCCCTGCTCCTGCTCCTGCTCTTG
CTTCCGCTCCTGCATCTTCTGCTTCTCCT

MXO01354.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG12219-PA 1689 CG12219-RA 1..373 9..381 1790 99.1 Plus
CG12219-PA 1689 CG12219-RA 421..720 430..729 1500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG12219-RA 2018 CG12219-RA 87..806 9..729 3190 96.3 Plus
CG2889-RB 2098 CG2889-RB 435..524 183..272 180 80 Plus
CG2889-RA 2173 CG2889-RA 510..599 183..272 180 80 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6300414..6300968 729..174 2355 95.3 Minus
X 23542271 X 6301035..6301199 173..9 810 99.4 Minus
X 23542271 X 10475211..10475300 183..272 180 80 Plus
Blast to na_te.dros performed 2014-11-28 20:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 669..725 653..712 113 68.3 Plus

MXO01354.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:44 Download gff for MXO01354.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12219-PA 1..720 9..729 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:48 Download gff for MXO01354.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12219-RA 87..806 9..729 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:25 Download gff for MXO01354.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12219-RA 87..806 9..729 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:25 Download gff for MXO01354.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6300414..6300968 174..729 95 <- Minus
X 6301035..6301199 9..173 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:48 Download gff for MXO01354.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6194447..6195001 174..729 95 <- Minus
arm_X 6195068..6195232 9..173 99   Minus