MXO01354.3prime Sequence
875 bp (788 high quality bases) assembled on 2007-03-15
> MXO01354.3prime
ATGGTCTAGAAAGCTTGCGACTGCGGCCGCAGGACCCGGCTGAGCCTGTG
CCTGTGACGGGTTGGTGTGCTGCATCTGCTCCTGGACGCCAGCCTTGGCC
GCCGAGCGCGTGGCTCGCGATCTCTCCCATTCCGCTTTGTGCTTGCGCTT
AGTGTGATGGTACATATTCGACTTGGAGCGGAATTCCGTGGGACAGAAGG
CGCAGGTGTGCAGCTTGACGCCCGTGTGCGTGGCAAAGTGCTCCTCCAAA
TATCGCTTCATCTTGAAGCTTTTGCCGCACACATCGCATGCGTACTTGGG
CTTGCTCAGGCAGCGATGATTCTGGCCTTGAAGCTCACCGCAATTGGGAC
AAATGATCGAAACGGGTGCCGCATGGATGTTTTCCTCCCCCCCACCCGCC
GGTCGTTTATCCGTCTCAAAAGGAGGGTGGTTGCCATAGGGATGCGCCAT
CATTGTCCCAGTTGTCGTTGTCGTCGTTGTTGTGGCACTGCTCGTTCCTA
CGGCCGCCGCTGCAGCCGCCGTTGCCGACATGACAGCAAAGAGTTGTTCC
TGATGTTGCTGTTGCAAAAGGCTCGCACACAGACGCTGCTGCAGGCTATC
CGGTTGTCCTGGCGGATTGCCCGTTAGCGAAGCGGCTGCCACGACAGCAG
CGGCTACCGCATTATAATTGGCCAGTATGAGCTCGTTCTCCTTGAGCCTT
TTCTGCGGCGAATCCTCGTCGCTAACATCGCTGCCCTCCGTGTGCTGGAC
CTTTTTGGGCGAGTGCGTCTTTCGGCGACTGGATCGATTGCTTGAGCCCC
GACTACCGGATGGCGGTGTCTTGGTTATGGTGAGGTTCATGGCCTCGCTG
GGTTGACTCTTGATTACCGACAGCG
MXO01354.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12219-PA | 1689 | CG12219-RA | 830..1309 | 875..396 | 2300 | 99.1 | Minus |
CG12219-PA | 1689 | CG12219-RA | 1326..1683 | 379..22 | 1740 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12219-RA | 2018 | CG12219-RA | 916..1769 | 875..22 | 4030 | 98.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6299863..6300304 | 434..875 | 2195 | 99.8 | Plus |
X | 23542271 | X | 6299303..6299526 | 22..245 | 1120 | 100 | Plus |
X | 23542271 | X | 6299607..6299798 | 243..434 | 735 | 92.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:31:56 has no hits.
MXO01354.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:43 Download gff for
MXO01354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12219-PA | 830..1689 | 18..875 | 97 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:18 Download gff for
MXO01354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12219-RA | 916..1772 | 19..875 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:39 Download gff for
MXO01354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12219-RA | 916..1772 | 19..875 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:39 Download gff for
MXO01354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6299300..6299524 | 19..243 | 99 | <- | Plus |
X | 6299608..6299797 | 244..433 | 92 | <- | Plus |
X | 6299863..6300304 | 434..875 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:18 Download gff for
MXO01354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6193333..6193557 | 19..243 | 99 | <- | Plus |
arm_X | 6193641..6193830 | 244..433 | 92 | <- | Plus |
arm_X | 6193896..6194337 | 434..875 | 99 | | Plus |
MXO01354.5prime Sequence
729 bp (728 high quality bases) assembled on 2007-03-15
> MXO01354.5prime
CAGTCGACATGATCTGTCGCCTGTGCCTGAACGCGCTCGACGAGCAGAGC
GCGGTGCTACTGTTCGACGGCGCCGGCGGAGCCAGTGCGCCCGCACCGGA
TGACGAGGACGACGGCAAGGCGATGCCAGAGAGCTACCTGGTCCAACTGA
TCTCGATTCACTTGTACCTCTGCCTCTCCCGCGACGACGCCATCTCCACC
TGCATCTGCACCGAGTGCTGCTCGCAACTGGAGAGCTTCCACAACTTCTG
GAAGCTGGTGGAGCTAAAGCAGACGACGCTGTGCAGCCAGTTTTTGGCTA
TCGATTGTGATGTCAACTGGTCGGAGGATGGTTGCGAAACGCAGTTGGAT
GCGCAACCGCAATTGCTACTGGAGCCGGCGGTTTTTCCCCCCCCCCCCCC
CTCCCACAACGGCGAATAAATAAAAAAGAATGTTCTGCGAGAAGTCATTT
AAGATGCGCCGCTACCTGGAGGAGCACATAGCCACCCACACCGGCGACCG
ACCCATTGCGTGTCCCTACTGCGAAATGGCCTTCCGCTGCCGTTCGAATA
TGTACACCCATGTGAAGAGCAAGCACACCACGCAGTGGCTAAAGGCTCGC
GAAGAGCGGGATGCGGCCAAGTCGAATCAGAATCACACGACGCCGGAGGA
GACCGCTCCAGCAGTTTTAGTTCCTGTCCCTGCTCCTGCTCCTGCTCTTG
CTTCCGCTCCTGCATCTTCTGCTTCTCCT
MXO01354.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12219-PA | 1689 | CG12219-RA | 1..373 | 9..381 | 1790 | 99.1 | Plus |
CG12219-PA | 1689 | CG12219-RA | 421..720 | 430..729 | 1500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12219-RA | 2018 | CG12219-RA | 87..806 | 9..729 | 3190 | 96.3 | Plus |
CG2889-RB | 2098 | CG2889-RB | 435..524 | 183..272 | 180 | 80 | Plus |
CG2889-RA | 2173 | CG2889-RA | 510..599 | 183..272 | 180 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6300414..6300968 | 729..174 | 2355 | 95.3 | Minus |
X | 23542271 | X | 6301035..6301199 | 173..9 | 810 | 99.4 | Minus |
X | 23542271 | X | 10475211..10475300 | 183..272 | 180 | 80 | Plus |
Blast to na_te.dros performed 2014-11-28 20:08:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 669..725 | 653..712 | 113 | 68.3 | Plus |
MXO01354.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:44 Download gff for
MXO01354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12219-PA | 1..720 | 9..729 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:48 Download gff for
MXO01354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12219-RA | 87..806 | 9..729 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:25 Download gff for
MXO01354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12219-RA | 87..806 | 9..729 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:25 Download gff for
MXO01354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6300414..6300968 | 174..729 | 95 | <- | Minus |
X | 6301035..6301199 | 9..173 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:48 Download gff for
MXO01354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6194447..6195001 | 174..729 | 95 | <- | Minus |
arm_X | 6195068..6195232 | 9..173 | 99 | | Minus |