MXO01355.3prime Sequence
697 bp (635 high quality bases) assembled on 2007-03-15
> MXO01355.3prime
ATGGTCTAGAAAGCTTGCGACGGAAATCGGCGCATTCGTGGCCGCCGGCG
ATTGCTGTTGCGGCTGCTGTTGGTGGTGCTGATGGTGATGATGGTGGTGG
TGACCCATGTGGTGATGACCCAGATGATGGTGCTGCTCCTGATGGTGGTG
GCTCAGGGTCAGATGATGATGCTGCTCCTGCTGGTGTTGCTGCTGCAGCT
GGTGATGGTGGTTGTATTGCTGGTGCTGTGTCTTCAGCAGCATGGAGCGG
TACATTTCGGAGAGGAGACTCCACATGGGCGGCGAGTCCTTGGCCAGATC
CACGGGTGATCCCGCCGGCAGGAAGGCGGTGGGCGGTGCCTGGCTGGTGG
CAGCGGCAGCCGCTGCGGCGGCAAACTTCTTTTTCCCCCCCACGCGCAGA
TGATGATGCTCCTCGAGATAAAGAACGGGCAGTGGGAGCATTTGCCGCCG
GCTGGTCATGTAGGCACTGTCGCTATCCGGGTCCAGATCCATTTTGATGC
TCGTCTGTGGTGGATTGGCGCTAGCGCTGGCGGAGGAACTAGAGGCGGAG
GAGGCGGCTGCCGTGGAACAGGCGGAGCTGGAGGCGGTGCTGTCGTGACG
CTTACGCTTGCCCAGCAACTGATCCATGGAGAAGGCATCGCTGGGCGAGC
GCTTCTCACGCTCCAGCTCATGCTCCTGTTCGGGTTCGTGCTCCTTG
MXO01355.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9908-PA | 1707 | disco-RA | 1347..1704 | 376..19 | 1790 | 100 | Minus |
| CG9908-PB | 1707 | disco-RB | 1347..1704 | 376..19 | 1790 | 100 | Minus |
| CG9908-PA | 1707 | disco-RA | 1026..1301 | 697..422 | 1380 | 100 | Minus |
| CG9908-PB | 1707 | disco-RB | 1026..1301 | 697..422 | 1380 | 100 | Minus |
| CG15470-PA | 1038 | CG15470-RA | 715..749 | 204..170 | 150 | 97.1 | Minus |
| CG15772-PA | 780 | CG15772-RA | 250..287 | 204..167 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| disco-RB | 3067 | CG9908-RB | 1588..2266 | 697..19 | 3215 | 98.2 | Minus |
| disco-RA | 3247 | CG9908-RA | 1592..2270 | 697..19 | 3215 | 98.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16211575..16212253 | 19..697 | 3215 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:44:33 has no hits.
MXO01355.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:44 Download gff for
MXO01355.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9908-PB | 1026..1707 | 15..697 | 97 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:36 Download gff for
MXO01355.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| disco-RA | 1587..2268 | 15..697 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:44 Download gff for
MXO01355.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| disco-RA | 1592..2273 | 15..697 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:44 Download gff for
MXO01355.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16211572..16212253 | 15..697 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:36 Download gff for
MXO01355.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16105605..16106286 | 15..697 | 97 | | Plus |
MXO01355.5prime Sequence
413 bp (413 high quality bases) assembled on 2007-03-15
> MXO01355.5prime
CAGTCGACATGGAGCACATAATGAACCCGTTCATGTCACCGGCTTATCTG
CTGGGCCATGGCCCACATTCCCACCAGCATGTGCACTCCCATCTACCGTC
ACACCCGCAGCCAAATGCCGCCTCTCCGGCCAGCTCACCCGGCGGATCCA
GTGGCTCTGGATCGGGATCGGCAGCGGGATCGGGCACTGGATCAGGTTCA
TCCTTAAAGCCTCGTCGCTGGGGCTCACCGCCCATCAATCTGGCCGGTCA
GTTTATCAATCCAGCCACGGGAAAGAAACGAGTACAGTGCTCCATTTGCT
TCAAGACCTTCTGCGACAAGGGCGCCCTTAATATTCACTTTTCGGCCGTG
CATCTTCGCGAGATGCACAAGTGCACGGTGGATTTTTTCTCCCCCCCCCC
CAGTTCGAGGCGT
MXO01355.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9908-PA | 1707 | disco-RA | 1..374 | 9..382 | 1820 | 99.4 | Plus |
| CG9908-PB | 1707 | disco-RB | 1..374 | 9..382 | 1820 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:08:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| disco-RB | 3067 | CG9908-RB | 555..936 | 1..382 | 1865 | 99.2 | Plus |
| disco-RA | 3247 | CG9908-RA | 559..940 | 1..382 | 1865 | 99.2 | Plus |
| disco-r-RD | 4485 | CG32577-RD | 1676..1810 | 249..383 | 300 | 81.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:08:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16212905..16213286 | 382..1 | 1865 | 99.2 | Minus |
| X | 23542271 | X | 16121671..16121805 | 383..249 | 300 | 81.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:08:12 has no hits.
MXO01355.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:45 Download gff for
MXO01355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9908-PB | 1..405 | 9..413 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:27 Download gff for
MXO01355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| disco-RA | 554..966 | 1..413 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:43 Download gff for
MXO01355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| disco-RA | 559..971 | 1..413 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:43 Download gff for
MXO01355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16212874..16213286 | 1..413 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:27 Download gff for
MXO01355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16106907..16107319 | 1..413 | 95 | | Minus |
