MXO01356.3prime Sequence
877 bp (795 high quality bases) assembled on 2007-03-15
> MXO01356.3prime
ATGGTCTAGAAAGCTTGCATCGTGGGCACTCTGTGCATCCTCTCTGCCGG
TCATCTTCTTAAGCTGGTTGTTTCCATGCACCGTCAGGCTGTGGTTTGTG
AACTCGAGTATGCTCCTAAACGACTGCTTGCAGATGTGGCAGGGCACAGT
CTTTGTGGGAGTGCGGTAGACGCCGGCATGCGCCACATTCTTGGGAATTT
TTTTCACGCTCGGTGGAGCCATGGACTGGGTTCCTTGTGAGGGAGCTAAT
TTGGGAATAGTACTAATGCGTTGCTGTGGCTTCTGGGGCATCGTCATGGG
ATGGTTAATGCCACTGGTGCCACCGATCTTTGGCAGCTGGGCTTTCTTCT
CGTGGTTCAGCTCGGTGAACTCCAGCTTGTTCTTCCCCGACGGCGGTATC
TTGTCGCAGTTCTGCATTAAATGGATGTGCAAGGCACGTTCCAGTGCGAA
ATTCTTATCGCAAAACTTGCAGCGATTCTTCGAGACTCCCGCTGCAACCG
GATTGCTGTTCAGACGCTTAAGGGTATTGGCTCCGTTGTCAACCGGATCG
TGCATTCGCATATGCACGTCAAGAAGTGACTTCACCCGAAAGGTTGTGCT
GCAATTCTTGCAGCTAAAAACTTTCTCCGGAATGCTTTTTGTCGATGTCT
TAGCCGGCTTTGAGGCGATCTTCTCAGGCGAACGCACGCTGGTCACAGCG
AGCGACTTTCTTATGCTGCTCTTTGTTAGCTTGGAGACGGGCAAGCAGCT
GCGACGGCTTAGTGACACACCGCCACCGACACTCCGCTTGCGAGCTGGGC
TGTTGAGCGTTGTCTTGACCACCACCGACATGCGCTGCTTGAAGGAGTAC
GTTCGCGTCTCTGCGGTGGTGGTGGGC
MXO01356.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8478-PB | 1716 | CG8478-RB | 855..1343 | 877..389 | 2445 | 100 | Minus |
| CG8478-PA | 1659 | CG8478-RA | 798..1286 | 877..389 | 2445 | 100 | Minus |
| CG8478-PB | 1716 | CG8478-RB | 1353..1713 | 379..19 | 1805 | 100 | Minus |
| CG8478-PA | 1659 | CG8478-RA | 1296..1656 | 379..19 | 1805 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8478-RD | 2177 | CG8478-RD | 1019..1877 | 877..19 | 4235 | 99.5 | Minus |
| CG8478-RC | 2165 | CG8478-RC | 1007..1865 | 877..19 | 4235 | 99.5 | Minus |
| CG8478-RE | 2162 | CG8478-RE | 1004..1862 | 877..19 | 4235 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9764916..9765547 | 877..246 | 3100 | 99.4 | Minus |
| 3R | 32079331 | 3R | 9765607..9765835 | 247..19 | 1145 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:08:48 has no hits.
MXO01356.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:45 Download gff for
MXO01356.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-PA | 798..1659 | 15..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:50 Download gff for
MXO01356.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-RE | 1004..1868 | 11..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:27 Download gff for
MXO01356.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-RE | 1004..1868 | 11..877 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:27 Download gff for
MXO01356.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9764916..9765547 | 246..877 | 99 | -> | Minus |
| 3R | 9765609..9765841 | 11..245 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:50 Download gff for
MXO01356.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5590638..5591269 | 246..877 | 99 | -> | Minus |
| arm_3R | 5591331..5591563 | 11..245 | 98 | | Minus |
MXO01356.5prime Sequence
906 bp (770 high quality bases) assembled on 2007-03-15
> MXO01356.5prime
CAGTCGACATGGACGATTCGCGCACACCTATGGCCGGCAAGATCGATTCC
CGTAGCTCATCGATAATGACAAACGATGAGAGCGTCTCCATGTATTTATC
CTTTGACGCGGAGGACACCCTGTCCAATGCCAAGTGGCAGTCGGCCCTGG
TCACCCAGAACAGCCAGTTCCTGGAGGTGCACAACAGCAAGGTGGAGGTA
AACACCGATGATAAGGACCTAAGGCGCACTATCCTAAAGGATCTGCATCA
GTTGACCATTGGGGAACCGGACCAGAATTCTCCTCTGCGCCCATTTGACA
AAAGTATTCTTAACCGGCACAACGCCTTGTGCTCCACTCCCTCCAAGGGC
AATATTTCGACCGAAACGCAGACACCACAGATCTTGTTCCCCCCCCCTCT
GACCCAAATTGACGACAAGGAAAACACACAACCGGAGGGGTGTGGCGGCG
ATAACTCGACCTTGTCCAGTTCAGTGGACGTGACCGCCAATACGGTTAAG
GCCAATACCCTAAAAACAGGGGATGCTACCATGGACAATGTATCCTTGCA
GGAGGCTGCCAAGACCCCAGCTCCCAGCCAAGTCTATCCCTTGAGTGCGA
ACGTAGTTTTAGAGAATATAACTGAAGTATCCAACGAAGGAGTATCCATG
CTGGTCTCGCCAGCCGGAGCCGAAAAGGAGGTCGCCCATGTCAACGAGGT
AGTGAACGAAGTCTCTGAGCTAATTGCCAAAGCTCTAAAGATCTCCGCTG
ATTCTGTGAAGCCAGCGACCTCCAAATTAAAAGTGGAGGCGGGCAAGAAG
AGGCAGTCCATGAGCTCCACTTAATCGGGGTGCCGCCCTACCGCGCCCTC
GGCGCTTCTATCTGCCCACCACCACGCAGAGACGCGAACGTACTCCTTCA
AGCAGC
MXO01356.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:05:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8478-PB | 1716 | CG8478-RB | 390..821 | 398..829 | 2135 | 99.7 | Plus |
| CG8478-PA | 1659 | CG8478-RA | 333..764 | 398..829 | 2135 | 99.7 | Plus |
| CG8478-PB | 1716 | CG8478-RB | 1..375 | 9..383 | 1825 | 99.4 | Plus |
| CG8478-PA | 1659 | CG8478-RA | 1..318 | 66..383 | 1590 | 100 | Plus |
| CG8478-PB | 1716 | CG8478-RB | 819..866 | 828..875 | 215 | 97.9 | Plus |
| CG8478-PA | 1659 | CG8478-RA | 762..809 | 828..875 | 215 | 97.9 | Plus |
| CG8478-PB | 1716 | CG8478-RB | 867..898 | 875..906 | 160 | 100 | Plus |
| CG8478-PA | 1659 | CG8478-RA | 810..841 | 875..906 | 160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8478-RE | 2162 | CG8478-RE | 149..1047 | 8..906 | 4225 | 98.1 | Plus |
| CG8478-RB | 2266 | CG8478-RB | 253..1151 | 8..906 | 4225 | 98.1 | Plus |
| CG8478-RC | 2165 | CG8478-RC | 149..1050 | 8..906 | 4185 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9764039..9764626 | 40..627 | 2775 | 98.1 | Plus |
| 3R | 32079331 | 3R | 9764679..9764959 | 626..906 | 1280 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:32:08 has no hits.
MXO01356.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:45 Download gff for
MXO01356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-PB | 1..898 | 9..906 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:22 Download gff for
MXO01356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-RB | 253..1151 | 8..906 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:47 Download gff for
MXO01356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-RB | 253..1151 | 8..906 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:47 Download gff for
MXO01356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9763902..9763935 | 8..41 | 94 | -> | Plus |
| 3R | 9764041..9764626 | 42..627 | 98 | -> | Plus |
| 3R | 9764681..9764959 | 628..906 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:22 Download gff for
MXO01356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5589624..5589657 | 8..41 | 94 | -> | Plus |
| arm_3R | 5589763..5590348 | 42..627 | 98 | -> | Plus |
| arm_3R | 5590403..5590681 | 628..906 | 98 | | Plus |
