MXO01357.3prime Sequence
846 bp (772 high quality bases) assembled on 2007-03-15
> MXO01357.3prime
ATGGTCTAGAAAGCTTGCGTCCGAGAAGCTATCGCTCCAATAGGTGGTTG
TTGGTGGGGCCACAGCCTTGAAAAGATCCCGTCCTTCGCCGGGACGGCGT
TTGCTGCTGTTGTTGCCATGATGGCGGTCGTCCTTGCTGCGCGACTCCTG
CTTGAACCGCGACTGCTCCTCCTTGATGCGAACGCTATCCTCCTTGTGCC
GCTGACAACCGACGGCCTGGTGACGCTGCAGTCGCTGCTGGGTGAGGAAC
GTCCGCTGGCAGCGCTTGCACTCGTAAATGAAGCCATGCTCGTCGTGTCG
CTGGGCCATATGGTGCTTCAGTTCCGCGCGCAGTCGGAATATCTTGGGGC
ACAGCTCGCAGCGGAAATGGGCGCGCTCCTGCTCGTGCCGCTGCATGTGC
GTTTTATAGGCCCACTCCACCTTGAACTTCTTGCCGCAGATGGGACAGGC
ATGCTCTATTCTCTCGTGAGTCTTACGATGCAGCACATAGGATTGTTTGC
GCGAGAACGTCAAGTCGCAGTTGGGACACTCGAATGGGCCCACTGAAGCC
GTCGAAGAGGGCTGGTATTTCTTCTTTTGGGCGCTGGAAGGCTCCCCATC
GCTGTCCGTGCCTCTCTTGAGTGGCTTTTTTCGAGGACGCCCACGTGGTC
CGGGCTTCTTTTTCTCCTTCTCACTGTCATCCGAATCGGCAGAATCGCTG
TCGGCACTCGTGGTTCCGGCTACATCGGATACCTTGAACTCATCATCGAG
CTCATCCTCATCCTCACTGGAATCGGTGACAGGTGCGTCTATGACCACAT
AGCCGCGGGGTCTTCGCACTTTATTCTTGCTTCGGGACAAACGCTT
MXO01357.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12391-PA | 1764 | CG12391-RA | 934..1761 | 846..19 | 4115 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12391-RA | 2378 | CG12391-RA | 1225..2052 | 846..19 | 4125 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11147928..11148755 | 19..846 | 4125 | 99.9 | Plus |
Blast to na_te.dros performed 2014-11-28 18:40:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3757..3810 | 156..103 | 108 | 66.7 | Minus |
MXO01357.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:46 Download gff for
MXO01357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12391-PA | 934..1764 | 15..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:33 Download gff for
MXO01357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12391-RA | 1225..2055 | 15..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:27 Download gff for
MXO01357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12391-RA | 1225..2055 | 15..846 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:27 Download gff for
MXO01357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11147924..11148755 | 15..846 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:33 Download gff for
MXO01357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7035429..7036260 | 15..846 | 99 | | Plus |
MXO01357.5prime Sequence
699 bp (698 high quality bases) assembled on 2007-03-15
> MXO01357.5prime
CAGTCGACATGGAAGCCGACATAACGCCCCTGGCGGAAACCAACGGAGAG
CAGCGCCAAAATCCCCAGGAAAGTGCTCAAAACCAAGAGCAACCGCAACC
GCGGCAGGATTTGGCGGGCAAGTCGGTGGGTTCCGCTGATGATGGCGTCT
CCGGAACTGTGGGACAGATTATGGATTACCTCGAGGACGATGCCGGTGCA
ACTGCCGACCAGGACGCGGAGATGGGCGAGGCAGAGTATCTGGATGGCGA
GATGCCGCAGGAGGATGAGAGCGAGACTCCGCAAACGGAGAAAGCCAATG
AAGGTTGCCAGGAATCAAGCAATAAGAAGGATTTGCAAGAATCTGCAGCT
AAAGATGATTTTTCCAAGGAAAAAAGTGGAGAGGATGGTGAACCCCACAC
CGACAAGGAGAAGAAGGCAACTCATTTACATGAAGATAACAACGATGATG
CCGAAAAGGATGGCGACGAGGCCGACGCAGAGGATGAAGACGATGTAGAG
AAGCCAGAAGATGAGGATGGCACCGAAGAAGGCGACGAGGCCATTGAAGA
AGATGAGGACGCTCTCGATGAAGATGAGGATCCCAACGAAGAAGTCGAGG
AAATTGAACCAGATTTCGAGACTGGCACCGATGCAGAAGGTGAACTAATC
ACTGGCGATGAGCCGGGCGATCTGGCCGATGTGCCCATTAGGGAGCGCA
MXO01357.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12391-PA | 1764 | CG12391-RA | 1..384 | 9..392 | 1920 | 100 | Plus |
CG12391-PA | 1764 | CG12391-RA | 389..691 | 397..699 | 1515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12391-RA | 2378 | CG12391-RA | 292..982 | 9..699 | 3395 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11148998..11149513 | 699..184 | 2520 | 99.2 | Minus |
2R | 25286936 | 2R | 11149600..11149777 | 186..9 | 890 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:53:57 has no hits.
MXO01357.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:46 Download gff for
MXO01357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12391-PA | 1..690 | 9..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:01 Download gff for
MXO01357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12391-RA | 284..981 | 1..698 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:13 Download gff for
MXO01357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12391-RA | 284..981 | 1..698 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:13 Download gff for
MXO01357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11148999..11149511 | 186..698 | 99 | <- | Minus |
2R | 11149601..11149785 | 1..185 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:01 Download gff for
MXO01357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7036504..7037016 | 186..698 | 99 | <- | Minus |
arm_2R | 7037106..7037290 | 1..185 | 97 | | Minus |