Clone MXO01357 Report

Search the DGRC for MXO01357

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:57
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG12391-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01357.3prime Sequence

846 bp (772 high quality bases) assembled on 2007-03-15

> MXO01357.3prime
ATGGTCTAGAAAGCTTGCGTCCGAGAAGCTATCGCTCCAATAGGTGGTTG
TTGGTGGGGCCACAGCCTTGAAAAGATCCCGTCCTTCGCCGGGACGGCGT
TTGCTGCTGTTGTTGCCATGATGGCGGTCGTCCTTGCTGCGCGACTCCTG
CTTGAACCGCGACTGCTCCTCCTTGATGCGAACGCTATCCTCCTTGTGCC
GCTGACAACCGACGGCCTGGTGACGCTGCAGTCGCTGCTGGGTGAGGAAC
GTCCGCTGGCAGCGCTTGCACTCGTAAATGAAGCCATGCTCGTCGTGTCG
CTGGGCCATATGGTGCTTCAGTTCCGCGCGCAGTCGGAATATCTTGGGGC
ACAGCTCGCAGCGGAAATGGGCGCGCTCCTGCTCGTGCCGCTGCATGTGC
GTTTTATAGGCCCACTCCACCTTGAACTTCTTGCCGCAGATGGGACAGGC
ATGCTCTATTCTCTCGTGAGTCTTACGATGCAGCACATAGGATTGTTTGC
GCGAGAACGTCAAGTCGCAGTTGGGACACTCGAATGGGCCCACTGAAGCC
GTCGAAGAGGGCTGGTATTTCTTCTTTTGGGCGCTGGAAGGCTCCCCATC
GCTGTCCGTGCCTCTCTTGAGTGGCTTTTTTCGAGGACGCCCACGTGGTC
CGGGCTTCTTTTTCTCCTTCTCACTGTCATCCGAATCGGCAGAATCGCTG
TCGGCACTCGTGGTTCCGGCTACATCGGATACCTTGAACTCATCATCGAG
CTCATCCTCATCCTCACTGGAATCGGTGACAGGTGCGTCTATGACCACAT
AGCCGCGGGGTCTTCGCACTTTATTCTTGCTTCGGGACAAACGCTT

MXO01357.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12391-PA 1764 CG12391-RA 934..1761 846..19 4115 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12391-RA 2378 CG12391-RA 1225..2052 846..19 4125 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11147928..11148755 19..846 4125 99.9 Plus
Blast to na_te.dros performed 2014-11-28 18:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3757..3810 156..103 108 66.7 Minus

MXO01357.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:46 Download gff for MXO01357.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12391-PA 934..1764 15..846 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:33 Download gff for MXO01357.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12391-RA 1225..2055 15..846 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:27 Download gff for MXO01357.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12391-RA 1225..2055 15..846 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:27 Download gff for MXO01357.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11147924..11148755 15..846 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:33 Download gff for MXO01357.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7035429..7036260 15..846 99   Plus

MXO01357.5prime Sequence

699 bp (698 high quality bases) assembled on 2007-03-15

> MXO01357.5prime
CAGTCGACATGGAAGCCGACATAACGCCCCTGGCGGAAACCAACGGAGAG
CAGCGCCAAAATCCCCAGGAAAGTGCTCAAAACCAAGAGCAACCGCAACC
GCGGCAGGATTTGGCGGGCAAGTCGGTGGGTTCCGCTGATGATGGCGTCT
CCGGAACTGTGGGACAGATTATGGATTACCTCGAGGACGATGCCGGTGCA
ACTGCCGACCAGGACGCGGAGATGGGCGAGGCAGAGTATCTGGATGGCGA
GATGCCGCAGGAGGATGAGAGCGAGACTCCGCAAACGGAGAAAGCCAATG
AAGGTTGCCAGGAATCAAGCAATAAGAAGGATTTGCAAGAATCTGCAGCT
AAAGATGATTTTTCCAAGGAAAAAAGTGGAGAGGATGGTGAACCCCACAC
CGACAAGGAGAAGAAGGCAACTCATTTACATGAAGATAACAACGATGATG
CCGAAAAGGATGGCGACGAGGCCGACGCAGAGGATGAAGACGATGTAGAG
AAGCCAGAAGATGAGGATGGCACCGAAGAAGGCGACGAGGCCATTGAAGA
AGATGAGGACGCTCTCGATGAAGATGAGGATCCCAACGAAGAAGTCGAGG
AAATTGAACCAGATTTCGAGACTGGCACCGATGCAGAAGGTGAACTAATC
ACTGGCGATGAGCCGGGCGATCTGGCCGATGTGCCCATTAGGGAGCGCA

MXO01357.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12391-PA 1764 CG12391-RA 1..384 9..392 1920 100 Plus
CG12391-PA 1764 CG12391-RA 389..691 397..699 1515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12391-RA 2378 CG12391-RA 292..982 9..699 3395 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11148998..11149513 699..184 2520 99.2 Minus
2R 25286936 2R 11149600..11149777 186..9 890 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:53:57 has no hits.

MXO01357.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:46 Download gff for MXO01357.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12391-PA 1..690 9..698 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:01 Download gff for MXO01357.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12391-RA 284..981 1..698 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:13 Download gff for MXO01357.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12391-RA 284..981 1..698 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:13 Download gff for MXO01357.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11148999..11149511 186..698 99 <- Minus
2R 11149601..11149785 1..185 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:01 Download gff for MXO01357.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7036504..7037016 186..698 99 <- Minus
arm_2R 7037106..7037290 1..185 97   Minus