Clone Sequence Records
MXO01359.3prime Sequence
868 bp (815 high quality bases) assembled on 2007-03-15
> MXO01359.3prime
ATGGTCTAGAAAGCTTGCAACAACCACTGCTCCTGCCTCCGAACGGCTAA
CTGGTAGATCGGGACAATTCTTCCAGGTGTCCGAAAGCGGATCATAACAT
TCGACAGCATTGATAGTCACTTGGGCTCGGTAGAAGTTTACCTCGCAGGG
CTGATCACCGCCAGCTACGTAGAGCAAGCCATCGGCGGCGACCACGGCAG
GAATGGCTCTGGGCACGTTTAATGCACACACTGTAGTCCACTTATCCTCG
TCGAAGCTGTAGCGTTCCACGGAGCTGAGAATGTCCTGACTGATGCTACT
GCCTCCAACCACATACAAGTAGCGATCCAGAACGGCCACACCCATTTGAC
AGCGAGCTGTTTGCATGCGGGCCAGCTCGTTCCACTCTTTTGTCACTGGA
TTGAAGCTGATTAAATCCGGCAGATGACGGGTTGTTGTTGTGCAGCCACC
GACAATGTAAATGAGACCCTCGAAACTGACCACACCCATGCTGAATCTAG
GCTGCGGCATGCTGCCCATTAATTTCCAGAGATCCTGCTCCGGATCATAG
CACTCCATGGAGCCGCCGATGTCGTCGCCTATCCAACCGCCTACGGCAAA
CAGATTTCCGCCCATGGTGCAAAGACCGAACTCGCAGCGCGGCACAATCA
TCGGGGCAATCGGTTGCCAAACATCGTTCTGTGGATCATAGACCTCGCCA
TTGGCCAGAATCTGTGAACCGCGCTCTCCTCCTACCACATAGATCTTGCC
ATTCAATGCTGATACACCTGGCAGGATGCGTCCCACCTCCATAGGCGCCG
TTTCCGTCCACTCGCGCCGGATATATCGAATTTGGCCACCGTCTCGAAGA
TGCAGTCGGCCGAGTTCC
MXO01359.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9426-PA | 1884 | CG9426-RA | 1079..1881 | 821..19 | 4015 | 100 | Minus |
CG9426-PA | 1884 | CG9426-RA | 1031..1078 | 868..821 | 240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9426-RA | 3184 | CG9426-RA | 1462..2312 | 868..19 | 4230 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13217676..13218138 | 407..868 | 2265 | 99.8 | Plus |
2L | 23513712 | 2L | 13217361..13217619 | 151..409 | 1295 | 100 | Plus |
2L | 23513712 | 2L | 13217162..13217296 | 19..153 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:30:07 has no hits.
MXO01359.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:48 Download gff for
MXO01359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9426-PA | 1031..1884 | 18..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:39 Download gff for
MXO01359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9426-RA | 1462..2312 | 19..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:52 Download gff for
MXO01359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9426-RA | 1462..2312 | 19..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:52 Download gff for
MXO01359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13217162..13217293 | 19..150 | 100 | <- | Plus |
2L | 13217361..13217616 | 151..406 | 100 | <- | Plus |
2L | 13217676..13218138 | 407..868 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:39 Download gff for
MXO01359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13217361..13217616 | 151..406 | 100 | <- | Plus |
arm_2L | 13217162..13217293 | 19..150 | 100 | <- | Plus |
arm_2L | 13217676..13218138 | 407..868 | 99 | | Plus |
MXO01359.5prime Sequence
860 bp (858 high quality bases) assembled on 2007-03-15
> MXO01359.5prime
CAGTCGACATGCCACCGTTGAAAACATACCAGATACACGAATACAATGGC
AATACCAGTCCGAATGCGAATGCCAATCAGAACGCCAATCAGAATCCCAC
CGGCGGCGGCGGCGACGGTGACTTCTTTGGCCAAAATCTGGGATCTGGAG
CCACAGCGGCCAGCCATCGCACAAACCTGCCCTCCTACTGCAACGCCCAA
TATCCGTTCAAGGTGCTTTCCAATCTCAACCAACTGCGCGAGCAGTCCCG
TTTCTGCGACGTGGAGATCATCGCCGGAATGGCAACATTGAGTGCCCACC
GGGCTGTCCTGAGTGCAGCCAGTGCCTACTTCGAGGCCATGTTTCGACCC
GAGCTCGGGTTAAATGAGGTCAAGCAAAAATCCGTTGTGCTGCACACAAT
CGACGGCGATATCCTGCACATCCTGCTTGACTTCATCTATACGGGTCGCT
GCGAAATCACCCAGTCCAATGTCCAGGAGCTCCTGGCCGCCGCCGACATG
CTGCAGCTAAACGAGGTGGTCGACGGGTGCTGCGAGTTCCTCTGCCGCGA
GCTGCACGCCTCCAATGCCCTGGGCATTTTACGCTTCGCCGAGGCCCACA
ACTGCGAGTCGTTGGCCAAGAGTGCACTGAACTTTGTCCACGCGAATTTC
CCAGCGGTAACGCTTGAAGATGAGTTCCTAGAAACGCCACAAACTCTACT
CTCGCAGCTACTGAACTCGGAGCTGCTGCGTGTAGACTCCGAGTCGCAGG
TGTTCCAGGCGGCGCTTCGTTGGATTAAGCACGACGTGACGCAGCGCCGC
TGCTACGTCTTCGATGTCCTGTCCCACGTGCGCATGGCGCTTGTTCCGGT
AAAGGTGATC
MXO01359.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9426-PA | 1884 | CG9426-RA | 1..852 | 9..860 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9426-RA | 3184 | CG9426-RA | 428..1283 | 5..860 | 4265 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13219037..13219496 | 464..5 | 2285 | 99.8 | Minus |
2L | 23513712 | 2L | 13218317..13218521 | 860..656 | 1025 | 100 | Minus |
2L | 23513712 | 2L | 13218783..13218979 | 658..462 | 985 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:02:51 has no hits.
MXO01359.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:48 Download gff for
MXO01359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9426-PA | 1..852 | 9..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:47 Download gff for
MXO01359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9426-RA | 421..1283 | 1..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:15 Download gff for
MXO01359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9426-RA | 421..1283 | 1..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:15 Download gff for
MXO01359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13218317..13218520 | 657..860 | 100 | <- | Minus |
2L | 13218785..13218976 | 465..656 | 100 | <- | Minus |
2L | 13219037..13219497 | 1..464 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:47 Download gff for
MXO01359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13218317..13218520 | 657..860 | 100 | <- | Minus |
arm_2L | 13218785..13218976 | 465..656 | 100 | <- | Minus |
arm_2L | 13219037..13219497 | 1..464 | 99 | | Minus |