Clone MXO01359 Report

Search the DGRC for MXO01359

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:59
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG9426-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01359.3prime Sequence

868 bp (815 high quality bases) assembled on 2007-03-15

> MXO01359.3prime
ATGGTCTAGAAAGCTTGCAACAACCACTGCTCCTGCCTCCGAACGGCTAA
CTGGTAGATCGGGACAATTCTTCCAGGTGTCCGAAAGCGGATCATAACAT
TCGACAGCATTGATAGTCACTTGGGCTCGGTAGAAGTTTACCTCGCAGGG
CTGATCACCGCCAGCTACGTAGAGCAAGCCATCGGCGGCGACCACGGCAG
GAATGGCTCTGGGCACGTTTAATGCACACACTGTAGTCCACTTATCCTCG
TCGAAGCTGTAGCGTTCCACGGAGCTGAGAATGTCCTGACTGATGCTACT
GCCTCCAACCACATACAAGTAGCGATCCAGAACGGCCACACCCATTTGAC
AGCGAGCTGTTTGCATGCGGGCCAGCTCGTTCCACTCTTTTGTCACTGGA
TTGAAGCTGATTAAATCCGGCAGATGACGGGTTGTTGTTGTGCAGCCACC
GACAATGTAAATGAGACCCTCGAAACTGACCACACCCATGCTGAATCTAG
GCTGCGGCATGCTGCCCATTAATTTCCAGAGATCCTGCTCCGGATCATAG
CACTCCATGGAGCCGCCGATGTCGTCGCCTATCCAACCGCCTACGGCAAA
CAGATTTCCGCCCATGGTGCAAAGACCGAACTCGCAGCGCGGCACAATCA
TCGGGGCAATCGGTTGCCAAACATCGTTCTGTGGATCATAGACCTCGCCA
TTGGCCAGAATCTGTGAACCGCGCTCTCCTCCTACCACATAGATCTTGCC
ATTCAATGCTGATACACCTGGCAGGATGCGTCCCACCTCCATAGGCGCCG
TTTCCGTCCACTCGCGCCGGATATATCGAATTTGGCCACCGTCTCGAAGA
TGCAGTCGGCCGAGTTCC

MXO01359.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG9426-PA 1884 CG9426-RA 1079..1881 821..19 4015 100 Minus
CG9426-PA 1884 CG9426-RA 1031..1078 868..821 240 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9426-RA 3184 CG9426-RA 1462..2312 868..19 4230 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13217676..13218138 407..868 2265 99.8 Plus
2L 23513712 2L 13217361..13217619 151..409 1295 100 Plus
2L 23513712 2L 13217162..13217296 19..153 675 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:30:07 has no hits.

MXO01359.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:48 Download gff for MXO01359.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9426-PA 1031..1884 18..868 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:39 Download gff for MXO01359.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9426-RA 1462..2312 19..868 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:52 Download gff for MXO01359.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9426-RA 1462..2312 19..868 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:52 Download gff for MXO01359.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13217162..13217293 19..150 100 <- Plus
2L 13217361..13217616 151..406 100 <- Plus
2L 13217676..13218138 407..868 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:39 Download gff for MXO01359.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13217361..13217616 151..406 100 <- Plus
arm_2L 13217162..13217293 19..150 100 <- Plus
arm_2L 13217676..13218138 407..868 99   Plus

MXO01359.5prime Sequence

860 bp (858 high quality bases) assembled on 2007-03-15

> MXO01359.5prime
CAGTCGACATGCCACCGTTGAAAACATACCAGATACACGAATACAATGGC
AATACCAGTCCGAATGCGAATGCCAATCAGAACGCCAATCAGAATCCCAC
CGGCGGCGGCGGCGACGGTGACTTCTTTGGCCAAAATCTGGGATCTGGAG
CCACAGCGGCCAGCCATCGCACAAACCTGCCCTCCTACTGCAACGCCCAA
TATCCGTTCAAGGTGCTTTCCAATCTCAACCAACTGCGCGAGCAGTCCCG
TTTCTGCGACGTGGAGATCATCGCCGGAATGGCAACATTGAGTGCCCACC
GGGCTGTCCTGAGTGCAGCCAGTGCCTACTTCGAGGCCATGTTTCGACCC
GAGCTCGGGTTAAATGAGGTCAAGCAAAAATCCGTTGTGCTGCACACAAT
CGACGGCGATATCCTGCACATCCTGCTTGACTTCATCTATACGGGTCGCT
GCGAAATCACCCAGTCCAATGTCCAGGAGCTCCTGGCCGCCGCCGACATG
CTGCAGCTAAACGAGGTGGTCGACGGGTGCTGCGAGTTCCTCTGCCGCGA
GCTGCACGCCTCCAATGCCCTGGGCATTTTACGCTTCGCCGAGGCCCACA
ACTGCGAGTCGTTGGCCAAGAGTGCACTGAACTTTGTCCACGCGAATTTC
CCAGCGGTAACGCTTGAAGATGAGTTCCTAGAAACGCCACAAACTCTACT
CTCGCAGCTACTGAACTCGGAGCTGCTGCGTGTAGACTCCGAGTCGCAGG
TGTTCCAGGCGGCGCTTCGTTGGATTAAGCACGACGTGACGCAGCGCCGC
TGCTACGTCTTCGATGTCCTGTCCCACGTGCGCATGGCGCTTGTTCCGGT
AAAGGTGATC

MXO01359.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG9426-PA 1884 CG9426-RA 1..852 9..860 4260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG9426-RA 3184 CG9426-RA 428..1283 5..860 4265 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13219037..13219496 464..5 2285 99.8 Minus
2L 23513712 2L 13218317..13218521 860..656 1025 100 Minus
2L 23513712 2L 13218783..13218979 658..462 985 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:02:51 has no hits.

MXO01359.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:48 Download gff for MXO01359.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9426-PA 1..852 9..860 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:47 Download gff for MXO01359.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9426-RA 421..1283 1..860 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:15 Download gff for MXO01359.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9426-RA 421..1283 1..860 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:15 Download gff for MXO01359.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13218317..13218520 657..860 100 <- Minus
2L 13218785..13218976 465..656 100 <- Minus
2L 13219037..13219497 1..464 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:47 Download gff for MXO01359.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13218317..13218520 657..860 100 <- Minus
arm_2L 13218785..13218976 465..656 100 <- Minus
arm_2L 13219037..13219497 1..464 99   Minus