Clone MXO01360 Report

Search the DGRC for MXO01360

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:60
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptMED17-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01360.3prime Sequence

813 bp (761 high quality bases) assembled on 2007-03-15

> MXO01360.3prime
ATGGTCTAGAAAGCTTGCGGCCGTGTTACTTGTCAGCGAGGCCATCAGAA
ACTCCATTTTGTTGAGAAAGCTCTTGCCTTCGATTTTGTCGAACCTCACC
TCCTTGAATGTGCCTCCCAGATTCTCCCATAGCTTTTCCGGCACCAGTGG
ACTGGGAAAGAAATCCTGTCGTGGACTTCTCGCTATATAAACTTTAACAT
CTATCTGCGGATCGCAGCGAATCTGAACGGCAATCATGCGATCGCTATTG
GGAGATGCCAGAAGGCAGGAACTGGCATTTCCCAGCGGCTCCACCTTGCC
GATACCCAAGTGGTTGCTGTTCGACAGCACGGTCCAGGACATGCAGCGCG
CTAGACTGATCAGGCAGGAGATCTGGTGAGAGTTGATCTGGCAGAGGATC
AGGTCGCGAAGTTCCTGCGGCTCGTAGGACAGTCGCATAACGCGTCCATC
GCGACAAATGCATTTAAGAGAGCGCTCCTTGACGTGAATGACCAGCGAGG
TGCGTCCAATGGCATCGTAACCGTGCGTTACAATGTTAATCTTCACACAC
GACATGGTTGGACTGTTCATGGCATTCCAATGCGACACTATCTGCGGGTC
CTTCACATCCCTGGCCAGCGTATCGAGCACATATTGTGTTCGCTTTCGCA
TGAAAATGTGCTGCGCCTGGGCGATGATCTGTTCGAGTATGGTCTGTGAC
TTGGTCATGTCCAACAACGTTTCCCGATCGGCGGCCATCGGACCGGCTAG
CATGCGCTTCTTAGTTGGTCCCAGTGGTGCACTGGCCGGATGGGGAAAGG
GATGGTGTGAGTT

MXO01360.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7957-PA 1929 MED17-RA 1132..1926 813..19 3875 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
MED17-RA 2060 CG7957-RA 1190..1984 813..19 3915 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18190332..18191050 813..95 3535 99.4 Minus
3R 32079331 3R 18191107..18191189 101..19 415 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:54:07 has no hits.

MXO01360.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:48 Download gff for MXO01360.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7957-PA 1132..1929 16..813 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:08 Download gff for MXO01360.3prime
Subject Subject Range Query Range Percent Splice Strand
MED17-RA 1190..1988 15..813 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:18 Download gff for MXO01360.3prime
Subject Subject Range Query Range Percent Splice Strand
MED17-RA 1190..1988 15..813 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:18 Download gff for MXO01360.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18190332..18191045 100..813 99 -> Minus
3R 18191109..18191198 13..99 94 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:08 Download gff for MXO01360.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14016054..14016767 100..813 99 -> Minus
arm_3R 14016831..14016920 13..99 94 -> Minus

MXO01360.5prime Sequence

856 bp (630 high quality bases) assembled on 2007-03-15

> MXO01360.5prime
CAGTCGACATGTCGAATTCCGTGAATATATCAGTGGAAACGACTTGCGAG
AACCAGATACGTGAGATTGGCTACGATGGCACCGAATTGTATCAGCCGCC
GCCGACTTTGTCGGAAAGTCTGGCGAAATGTGCGGCGCGCATAGACTTTA
GCAAAACGTCGCTGGACGACCTCAAGAAGGAGGAGAAGTCGGCGGCGGCG
GCCGCCGACGAGGACAAAGACGCCACTCAGTTCCAAGAGAGCCTGTGGCC
CTGGGATGCGGTGCGCAACAAGCTGAAGGATGCGCTCACTGAGATATGTG
TGCTGTCCGATGTGATTTCCATTGCCAAGGACAAGCGCTATCTAGTGCTC
GATCCACTGCTCGAGGAGGCTGACGACACCAAGCCCTTTGTGCACGCGTA
CAGTCGCAAGAAAGCCATCTCTCAGGCAGCCCAAGTGCTCCTAAGTGGCG
CTGAACGCCTGCGGAACGCGCACAGCGAGCAGCGCAATCGCAATGTCTCA
GATTTCCACATCGAACTACTGCGCCTGCGACAGAACTGGCGCCTGAAGAA
GGTGTCCAATGCGATTATCGGAGATCTCAGCTACCGCACCGCGGGCTCCA
AGTTTGGCATGAGCGGCACCTTCGAGGTGACCAAAGCTGAAGAGACCGGT
GATGAAGACACAGCCAGCTCATCCAACAGTAGCAGTAGCGTATCCGGCAA
CAATGGCATGCAACTTAAAGCCAGCTCCGCATTGCGTGTGATTGTTCCAG
CGGAACTGCAGGGTGTCGCCTACATAAAGGTGATCACACAGAAGGATCAG
GAGGATTTGTGCACCGCTCAGCTGAATCTGATGGGTACGGGACCCATATA
ACTGCC

MXO01360.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG7957-PA 1929 MED17-RA 1..828 9..836 3690 97.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:16
Subject Length Description Subject Range Query Range Score Percent Strand
MED17-RA 2060 CG7957-RA 59..907 9..856 3905 97.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18189290..18190049 98..856 3435 97.1 Plus
3R 32079331 3R 18189130..18189219 9..98 450 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:08:15 has no hits.

MXO01360.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:49 Download gff for MXO01360.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7957-PA 1..849 9..856 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:42 Download gff for MXO01360.5prime
Subject Subject Range Query Range Percent Splice Strand
MED17-RA 59..907 9..856 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:53 Download gff for MXO01360.5prime
Subject Subject Range Query Range Percent Splice Strand
MED17-RA 59..907 9..856 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:53 Download gff for MXO01360.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18189130..18189218 9..97 100 -> Plus
3R 18189290..18190049 98..856 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:42 Download gff for MXO01360.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14014852..14014940 9..97 100 -> Plus
arm_3R 14015012..14015771 98..856 97   Plus