Clone Sequence Records
MXO01360.3prime Sequence
813 bp (761 high quality bases) assembled on 2007-03-15
> MXO01360.3prime
ATGGTCTAGAAAGCTTGCGGCCGTGTTACTTGTCAGCGAGGCCATCAGAA
ACTCCATTTTGTTGAGAAAGCTCTTGCCTTCGATTTTGTCGAACCTCACC
TCCTTGAATGTGCCTCCCAGATTCTCCCATAGCTTTTCCGGCACCAGTGG
ACTGGGAAAGAAATCCTGTCGTGGACTTCTCGCTATATAAACTTTAACAT
CTATCTGCGGATCGCAGCGAATCTGAACGGCAATCATGCGATCGCTATTG
GGAGATGCCAGAAGGCAGGAACTGGCATTTCCCAGCGGCTCCACCTTGCC
GATACCCAAGTGGTTGCTGTTCGACAGCACGGTCCAGGACATGCAGCGCG
CTAGACTGATCAGGCAGGAGATCTGGTGAGAGTTGATCTGGCAGAGGATC
AGGTCGCGAAGTTCCTGCGGCTCGTAGGACAGTCGCATAACGCGTCCATC
GCGACAAATGCATTTAAGAGAGCGCTCCTTGACGTGAATGACCAGCGAGG
TGCGTCCAATGGCATCGTAACCGTGCGTTACAATGTTAATCTTCACACAC
GACATGGTTGGACTGTTCATGGCATTCCAATGCGACACTATCTGCGGGTC
CTTCACATCCCTGGCCAGCGTATCGAGCACATATTGTGTTCGCTTTCGCA
TGAAAATGTGCTGCGCCTGGGCGATGATCTGTTCGAGTATGGTCTGTGAC
TTGGTCATGTCCAACAACGTTTCCCGATCGGCGGCCATCGGACCGGCTAG
CATGCGCTTCTTAGTTGGTCCCAGTGGTGCACTGGCCGGATGGGGAAAGG
GATGGTGTGAGTT
MXO01360.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7957-PA | 1929 | MED17-RA | 1132..1926 | 813..19 | 3875 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED17-RA | 2060 | CG7957-RA | 1190..1984 | 813..19 | 3915 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18190332..18191050 | 813..95 | 3535 | 99.4 | Minus |
3R | 32079331 | 3R | 18191107..18191189 | 101..19 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:54:07 has no hits.
MXO01360.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:48 Download gff for
MXO01360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7957-PA | 1132..1929 | 16..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:08 Download gff for
MXO01360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED17-RA | 1190..1988 | 15..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:18 Download gff for
MXO01360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED17-RA | 1190..1988 | 15..813 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:18 Download gff for
MXO01360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18190332..18191045 | 100..813 | 99 | -> | Minus |
3R | 18191109..18191198 | 13..99 | 94 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:08 Download gff for
MXO01360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14016054..14016767 | 100..813 | 99 | -> | Minus |
arm_3R | 14016831..14016920 | 13..99 | 94 | -> | Minus |
MXO01360.5prime Sequence
856 bp (630 high quality bases) assembled on 2007-03-15
> MXO01360.5prime
CAGTCGACATGTCGAATTCCGTGAATATATCAGTGGAAACGACTTGCGAG
AACCAGATACGTGAGATTGGCTACGATGGCACCGAATTGTATCAGCCGCC
GCCGACTTTGTCGGAAAGTCTGGCGAAATGTGCGGCGCGCATAGACTTTA
GCAAAACGTCGCTGGACGACCTCAAGAAGGAGGAGAAGTCGGCGGCGGCG
GCCGCCGACGAGGACAAAGACGCCACTCAGTTCCAAGAGAGCCTGTGGCC
CTGGGATGCGGTGCGCAACAAGCTGAAGGATGCGCTCACTGAGATATGTG
TGCTGTCCGATGTGATTTCCATTGCCAAGGACAAGCGCTATCTAGTGCTC
GATCCACTGCTCGAGGAGGCTGACGACACCAAGCCCTTTGTGCACGCGTA
CAGTCGCAAGAAAGCCATCTCTCAGGCAGCCCAAGTGCTCCTAAGTGGCG
CTGAACGCCTGCGGAACGCGCACAGCGAGCAGCGCAATCGCAATGTCTCA
GATTTCCACATCGAACTACTGCGCCTGCGACAGAACTGGCGCCTGAAGAA
GGTGTCCAATGCGATTATCGGAGATCTCAGCTACCGCACCGCGGGCTCCA
AGTTTGGCATGAGCGGCACCTTCGAGGTGACCAAAGCTGAAGAGACCGGT
GATGAAGACACAGCCAGCTCATCCAACAGTAGCAGTAGCGTATCCGGCAA
CAATGGCATGCAACTTAAAGCCAGCTCCGCATTGCGTGTGATTGTTCCAG
CGGAACTGCAGGGTGTCGCCTACATAAAGGTGATCACACAGAAGGATCAG
GAGGATTTGTGCACCGCTCAGCTGAATCTGATGGGTACGGGACCCATATA
ACTGCC
MXO01360.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7957-PA | 1929 | MED17-RA | 1..828 | 9..836 | 3690 | 97.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED17-RA | 2060 | CG7957-RA | 59..907 | 9..856 | 3905 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18189290..18190049 | 98..856 | 3435 | 97.1 | Plus |
3R | 32079331 | 3R | 18189130..18189219 | 9..98 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:08:15 has no hits.
MXO01360.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:49 Download gff for
MXO01360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7957-PA | 1..849 | 9..856 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:42 Download gff for
MXO01360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED17-RA | 59..907 | 9..856 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:53 Download gff for
MXO01360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED17-RA | 59..907 | 9..856 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:53 Download gff for
MXO01360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18189130..18189218 | 9..97 | 100 | -> | Plus |
3R | 18189290..18190049 | 98..856 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:42 Download gff for
MXO01360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14014852..14014940 | 9..97 | 100 | -> | Plus |
arm_3R | 14015012..14015771 | 98..856 | 97 | | Plus |