MXO01361.3prime Sequence
779 bp (710 high quality bases) assembled on 2007-03-15
> MXO01361.3prime
ATGGTCTAGAAAGCTTGCGACCTTAGTGGTTAGATCCAAGGCATTCGAGG
TGGCCACTTTGACGGGGGCTTCCAACCTCAGACGTTTTCCATTCTCACTG
CTGGCCTCTATGAGTTCGTCCAGTTTCCTCTTGATCGTTTCACTGGCCTC
GCTATCGCTTAGGATACTATTATTATTATTATTATTATTGTTATTGTTGT
TGCTGATACTGTTGTTGTTATTGTGGGTATTTTCAATGCTGGTCTTTGCT
GTCTCTGTGGTGCTGGAGTGATCTTCCTCTATCTCCGGATCAGCCGTTTC
TCGAACTGATATCTCCTCTTCAGGCGTTACTTTCAGATCCTCATCGTCAT
CATCTGTATCGTTCTTTTCTACATCGCTAGAGATCTCGCCTTCTGGTTCG
ATTTCTGGGCTACTACTTTTACTGCTCAGGGAACTGCCGGTGGTCTTCAT
GCTCAGATCAATGGGATTATCTTGACCGGGACTGGGTCTGGGATCCTCGC
CGGCTGGGGTTCGCTCTTCTTGTTGAGCGGGTGAGTGGGGTGGCGTCATG
GACACCACCAGATCCTCCTCCTCATCGTCGTGCTCGGCGCCATCAATAAT
TCCATCCGCTCTCGCCTCGTCGTCCTCTTCGTTCTGGCGACTTTTCACTC
TCTCCCTGCCACTTTCCGAGTTTGGTGTGACCAGAGCTGAAATTGAGTAA
TCCTGCTTGGAGTGTGGCGGTAGTTTGGTGGTCGGGGGAGGAATTTGTTG
CTGGGACTTGAGCACAGCGTCTAAATAAG
MXO01361.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4761-PA | 1944 | knrl-RA | 1183..1941 | 777..19 | 3695 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
knrl-RB | 2925 | CG4761-RB | 2147..2905 | 777..19 | 3735 | 99.5 | Minus |
knrl-RA | 3909 | CG4761-RA | 2147..2905 | 777..19 | 3735 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20598145..20598903 | 19..777 | 3735 | 99.5 | Plus |
Blast to na_te.dros performed 2014-11-28 20:32:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib4 | 2656 | transib4 TRANSIB4 2656bp | 322..379 | 184..237 | 109 | 72.9 | Plus |
MXO01361.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:49 Download gff for
MXO01361.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4761-PA | 1182..1944 | 16..779 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:29 Download gff for
MXO01361.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
knrl-RA | 2146..2909 | 15..779 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:58 Download gff for
MXO01361.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
knrl-RA | 2146..2909 | 15..779 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:58 Download gff for
MXO01361.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20598140..20598904 | 15..779 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:29 Download gff for
MXO01361.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20591240..20592004 | 15..779 | 99 | | Plus |
MXO01361.5prime Sequence
805 bp (704 high quality bases) assembled on 2007-03-15
> MXO01361.5prime
CAGTCGACATGATGAATCAGGATAATCCATATGCGATGAATCAGACGTGC
AAGGTGTGTGGAGAGCCGGCGGCTGGATTCCATTTCGGAGCCTTTACATG
CGAGGGCTGCAAGTCCTTCTTCGGCCGATCGTACAACAATCTGTCGTCGA
TATCCGACTGCAAGAACAACGGCGAGTGCATCATCAACAAGAAGAACCGA
ACCGCCTGCAAGGCGTGCCGTCTGAAGAAGTGCCTCATGGTGGGCATGTC
GAAGAGTGGATCCCGATATGGTCGTCGCTCCAACTGGTTCAAGATCCACT
GTCTGCTGCAGGAGCAGCAGCAGCAGGCGGTGGCTGCGATGGCGGCGCAC
CACAATAGCCAGCAGGCGGGTGGTGGAAGTTCCGGTGGATCCGCCCCCGG
TCAAGGAATGCCCAACGGGGTCAAGGGCATGTCGGGTGTACCCCCACCGG
CGGCTGCAGCAGCTGCTCTGGGAATGCTCGGGCATCCTGGTGGTTATCCG
GGTCTGTATGCCGTTGCCAATGCTGGCGGCTCGTCACGGAGTAAAGAGGA
GCTAATGATGTTGGGATTGGATGGCAGCGTGGAGTACGGCTCCCATAAAC
ATCCGGTGGTGGCATCACCCTCCGTAAGTTCCCCGGATTCCCACAACTCC
GACAGCTCTGTGGAGGTGAGTTCGGTGCGAGGCAACCCACTCCTACACTT
GGGCGGAAAATCCAATTCGGGAGGATCTTCAAGTGGTGCCGATGGCAGTC
ATTCGGGAGGAGGAGGAGGAGGAGGAGGAGGAGTGACGCCCGGCAAACCG
CCACA
MXO01361.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4761-PA | 1944 | knrl-RA | 391..797 | 399..805 | 2010 | 99.7 | Plus |
CG4761-PA | 1944 | knrl-RA | 1..383 | 9..391 | 1915 | 100 | Plus |
CG4717-PA | 1290 | kni-RA | 205..281 | 240..316 | 235 | 92.2 | Plus |
CG7383-PB | 1122 | eg-RB | 193..285 | 228..320 | 190 | 88.1 | Plus |
CG7383-PA | 1122 | eg-RA | 193..285 | 228..320 | 190 | 88.1 | Plus |
CG4717-PA | 1290 | kni-RA | 1..104 | 36..139 | 170 | 86.5 | Plus |
CG4717-PA | 1290 | kni-RA | 124..185 | 159..220 | 160 | 90.3 | Plus |
CG7383-PB | 1122 | eg-RB | 148..185 | 183..220 | 140 | 94.7 | Plus |
CG7383-PA | 1122 | eg-RA | 148..185 | 183..220 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
knrl-RB | 2925 | CG4761-RB | 965..1761 | 9..805 | 3895 | 99.2 | Plus |
knrl-RA | 3909 | CG4761-RA | 965..1761 | 9..805 | 3895 | 99.2 | Plus |
kni-RB | 1911 | CG4717-RB | 115..396 | 35..316 | 735 | 84 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20599289..20599982 | 805..112 | 3380 | 99.1 | Minus |
3L | 28110227 | 3L | 20693845..20694049 | 316..112 | 515 | 83.4 | Minus |
3L | 28110227 | 3L | 21816276..21816484 | 112..320 | 475 | 81.8 | Plus |
3L | 28110227 | 3L | 20602193..20602271 | 113..35 | 395 | 100 | Minus |
3L | 28110227 | 3L | 20694263..20694341 | 113..35 | 230 | 86.1 | Minus |
3L | 28110227 | 3L | 21814778..21814856 | 35..113 | 200 | 83.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:32:42 has no hits.
MXO01361.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:50 Download gff for
MXO01361.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4761-PA | 1..796 | 9..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:34 Download gff for
MXO01361.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
knrl-RA | 961..1760 | 1..804 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:04 Download gff for
MXO01361.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
knrl-RA | 961..1760 | 1..804 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:04 Download gff for
MXO01361.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20599290..20599980 | 114..804 | 99 | <- | Minus |
3L | 20602193..20602270 | 36..113 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:34 Download gff for
MXO01361.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20592390..20593080 | 114..804 | 99 | <- | Minus |
arm_3L | 20595293..20595370 | 36..113 | 100 | <- | Minus |