Clone MXO01361 Report

Search the DGRC for MXO01361

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:61
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptknrl-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01361.3prime Sequence

779 bp (710 high quality bases) assembled on 2007-03-15

> MXO01361.3prime
ATGGTCTAGAAAGCTTGCGACCTTAGTGGTTAGATCCAAGGCATTCGAGG
TGGCCACTTTGACGGGGGCTTCCAACCTCAGACGTTTTCCATTCTCACTG
CTGGCCTCTATGAGTTCGTCCAGTTTCCTCTTGATCGTTTCACTGGCCTC
GCTATCGCTTAGGATACTATTATTATTATTATTATTATTGTTATTGTTGT
TGCTGATACTGTTGTTGTTATTGTGGGTATTTTCAATGCTGGTCTTTGCT
GTCTCTGTGGTGCTGGAGTGATCTTCCTCTATCTCCGGATCAGCCGTTTC
TCGAACTGATATCTCCTCTTCAGGCGTTACTTTCAGATCCTCATCGTCAT
CATCTGTATCGTTCTTTTCTACATCGCTAGAGATCTCGCCTTCTGGTTCG
ATTTCTGGGCTACTACTTTTACTGCTCAGGGAACTGCCGGTGGTCTTCAT
GCTCAGATCAATGGGATTATCTTGACCGGGACTGGGTCTGGGATCCTCGC
CGGCTGGGGTTCGCTCTTCTTGTTGAGCGGGTGAGTGGGGTGGCGTCATG
GACACCACCAGATCCTCCTCCTCATCGTCGTGCTCGGCGCCATCAATAAT
TCCATCCGCTCTCGCCTCGTCGTCCTCTTCGTTCTGGCGACTTTTCACTC
TCTCCCTGCCACTTTCCGAGTTTGGTGTGACCAGAGCTGAAATTGAGTAA
TCCTGCTTGGAGTGTGGCGGTAGTTTGGTGGTCGGGGGAGGAATTTGTTG
CTGGGACTTGAGCACAGCGTCTAAATAAG

MXO01361.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4761-PA 1944 knrl-RA 1183..1941 777..19 3695 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
knrl-RB 2925 CG4761-RB 2147..2905 777..19 3735 99.5 Minus
knrl-RA 3909 CG4761-RA 2147..2905 777..19 3735 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20598145..20598903 19..777 3735 99.5 Plus
Blast to na_te.dros performed 2014-11-28 20:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
transib4 2656 transib4 TRANSIB4 2656bp 322..379 184..237 109 72.9 Plus

MXO01361.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:49 Download gff for MXO01361.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4761-PA 1182..1944 16..779 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:29 Download gff for MXO01361.3prime
Subject Subject Range Query Range Percent Splice Strand
knrl-RA 2146..2909 15..779 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:58 Download gff for MXO01361.3prime
Subject Subject Range Query Range Percent Splice Strand
knrl-RA 2146..2909 15..779 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:58 Download gff for MXO01361.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20598140..20598904 15..779 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:29 Download gff for MXO01361.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20591240..20592004 15..779 99   Plus

MXO01361.5prime Sequence

805 bp (704 high quality bases) assembled on 2007-03-15

> MXO01361.5prime
CAGTCGACATGATGAATCAGGATAATCCATATGCGATGAATCAGACGTGC
AAGGTGTGTGGAGAGCCGGCGGCTGGATTCCATTTCGGAGCCTTTACATG
CGAGGGCTGCAAGTCCTTCTTCGGCCGATCGTACAACAATCTGTCGTCGA
TATCCGACTGCAAGAACAACGGCGAGTGCATCATCAACAAGAAGAACCGA
ACCGCCTGCAAGGCGTGCCGTCTGAAGAAGTGCCTCATGGTGGGCATGTC
GAAGAGTGGATCCCGATATGGTCGTCGCTCCAACTGGTTCAAGATCCACT
GTCTGCTGCAGGAGCAGCAGCAGCAGGCGGTGGCTGCGATGGCGGCGCAC
CACAATAGCCAGCAGGCGGGTGGTGGAAGTTCCGGTGGATCCGCCCCCGG
TCAAGGAATGCCCAACGGGGTCAAGGGCATGTCGGGTGTACCCCCACCGG
CGGCTGCAGCAGCTGCTCTGGGAATGCTCGGGCATCCTGGTGGTTATCCG
GGTCTGTATGCCGTTGCCAATGCTGGCGGCTCGTCACGGAGTAAAGAGGA
GCTAATGATGTTGGGATTGGATGGCAGCGTGGAGTACGGCTCCCATAAAC
ATCCGGTGGTGGCATCACCCTCCGTAAGTTCCCCGGATTCCCACAACTCC
GACAGCTCTGTGGAGGTGAGTTCGGTGCGAGGCAACCCACTCCTACACTT
GGGCGGAAAATCCAATTCGGGAGGATCTTCAAGTGGTGCCGATGGCAGTC
ATTCGGGAGGAGGAGGAGGAGGAGGAGGAGGAGTGACGCCCGGCAAACCG
CCACA

MXO01361.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG4761-PA 1944 knrl-RA 391..797 399..805 2010 99.7 Plus
CG4761-PA 1944 knrl-RA 1..383 9..391 1915 100 Plus
CG4717-PA 1290 kni-RA 205..281 240..316 235 92.2 Plus
CG7383-PB 1122 eg-RB 193..285 228..320 190 88.1 Plus
CG7383-PA 1122 eg-RA 193..285 228..320 190 88.1 Plus
CG4717-PA 1290 kni-RA 1..104 36..139 170 86.5 Plus
CG4717-PA 1290 kni-RA 124..185 159..220 160 90.3 Plus
CG7383-PB 1122 eg-RB 148..185 183..220 140 94.7 Plus
CG7383-PA 1122 eg-RA 148..185 183..220 140 94.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
knrl-RB 2925 CG4761-RB 965..1761 9..805 3895 99.2 Plus
knrl-RA 3909 CG4761-RA 965..1761 9..805 3895 99.2 Plus
kni-RB 1911 CG4717-RB 115..396 35..316 735 84 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20599289..20599982 805..112 3380 99.1 Minus
3L 28110227 3L 20693845..20694049 316..112 515 83.4 Minus
3L 28110227 3L 21816276..21816484 112..320 475 81.8 Plus
3L 28110227 3L 20602193..20602271 113..35 395 100 Minus
3L 28110227 3L 20694263..20694341 113..35 230 86.1 Minus
3L 28110227 3L 21814778..21814856 35..113 200 83.5 Plus
Blast to na_te.dros performed on 2014-11-28 20:32:42 has no hits.

MXO01361.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:50 Download gff for MXO01361.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4761-PA 1..796 9..804 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:34 Download gff for MXO01361.5prime
Subject Subject Range Query Range Percent Splice Strand
knrl-RA 961..1760 1..804 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:04 Download gff for MXO01361.5prime
Subject Subject Range Query Range Percent Splice Strand
knrl-RA 961..1760 1..804 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:04 Download gff for MXO01361.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20599290..20599980 114..804 99 <- Minus
3L 20602193..20602270 36..113 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:34 Download gff for MXO01361.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20592390..20593080 114..804 99 <- Minus
arm_3L 20595293..20595370 36..113 100 <- Minus