MXO01362.3prime Sequence
780 bp (726 high quality bases) assembled on 2007-03-15
> MXO01362.3prime
ATGGTCTAGAAAGCTTGCGACTTCCTGTTTCGGCTTGTTTTGCGTCGAGG
CGTTGCGCGAAATCTTCAGGATGTTGGGTGGCTTGGGTTGGTTTTTGTCC
GCCTCGTATTGGGCGCGATGCAATCGCTGGCGATGCTTGTACATGTTGGC
GGAGCAGAAGAATGTCATCGGGCAGTTGGGACAGGTGTAGAGTACTTCAC
CCGTATGAGTGGATGTGTGTTCCTTGAGTTCCTGCGGCCGCTTGAAAGCC
TTTTCGCACATGGTGCACTTAAACTTGCGCTCGCACTCGTGATTGTGGTA
GATGTGACGCCGGAGAGCCCTTGCATTTGGGGACACCTTAGCGCATATAT
GGCAGCGATGCTCGCCGGCACTCTCTATTTGTATCGCCCCTCATGTGCTG
CTTCAGGCCGGTCATGCCCTTTAGCCAAGCGCCGCATATCTGGCACTGCT
GTAGCTCCGGTTCCGGACGTGGCTTATCCGAGTGCATCAGCTCCTGGTGC
TTCTTCAGGATGATCTTGGTGCGCATCTGCTTGCCGCACTTGTCGCAGAT
TATGGTACTCTCTGGGTCATGCATAGAGCTCATGTGGTTTTTCAGCTTGC
GCTCGGTGAGAAATTTTTTGTTGCACTCGGAACAGGTGAACTTGAACTCG
GACTTGGGCACATGCTTGTTAAGCTTGTGGTAGTCTATGGCCGTCTTGCT
AAGGAAGGTCTTCGAGCAGAGGTCGCAGCTAAACGTAAGCTTAACGGCGG
GATCCATGTGAACCTGCTGGTGCGACTCCA
MXO01362.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4282-PA | 1959 | CG4282-RA | 1196..1585 | 780..391 | 1950 | 100 | Minus |
CG4282-PA | 1959 | CG4282-RA | 1598..1953 | 377..22 | 1780 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4282-RA | 2393 | CG4282-RA | 1342..2099 | 780..22 | 3710 | 99.3 | Minus |
CG4707-RA | 2248 | CG4707-RA | 1460..2070 | 668..57 | 430 | 72.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16323854..16324245 | 614..222 | 1855 | 98.7 | Minus |
2R | 25286936 | 2R | 16324305..16324507 | 224..22 | 1015 | 100 | Minus |
2R | 25286936 | 2R | 16323626..16323791 | 780..615 | 830 | 100 | Minus |
2R | 25286936 | 2R | 24604773..24604940 | 57..224 | 240 | 76.2 | Plus |
2R | 25286936 | 2R | 24605001..24605081 | 230..310 | 180 | 81.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:23:39 has no hits.
MXO01362.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:50 Download gff for
MXO01362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4282-PA | 1197..1959 | 18..779 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:30:56 Download gff for
MXO01362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4282-RA | 1343..2106 | 13..779 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:18 Download gff for
MXO01362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4282-RA | 1343..2106 | 13..779 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:18 Download gff for
MXO01362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16323627..16323791 | 615..779 | 100 | -> | Minus |
2R | 16323854..16324244 | 223..614 | 98 | -> | Minus |
2R | 16324307..16324514 | 13..222 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:30:56 Download gff for
MXO01362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12211132..12211296 | 615..779 | 100 | -> | Minus |
arm_2R | 12211359..12211749 | 223..614 | 98 | -> | Minus |
arm_2R | 12211812..12212019 | 13..222 | 98 | | Minus |
MXO01362.5prime Sequence
847 bp (682 high quality bases) assembled on 2007-03-15
> MXO01362.5prime
CAGTCGACATGGATTCCTCTCCTAGCTGTTTACTCTGCATGTGCGAGTAT
CCGGCCATGATGGGGGACTATATAGATGTACACTCCGCGCGCGGCGACCA
ATTGGAGGTGACTACGATCGTCAACCAGCACTTCCCCGTCCAGATCTCCA
AGGAAAGCGACGAAAGGATATGCGGCCGCTGCTGGAAAATCGTCTCAGAC
TTCCACACTTTACACGAGTTCGTCAGTGCAGCGCAGAGCTCTTTACAGGA
AACAAAAGTGGCGCTCATGGAGGATGATCCCCTAACACAGGAAACTACGT
CCTTTCCGGAGATTATAAAACTGGCTACTCAGGAGGAGGAAGGGGTGACG
GAACCACAGGAACTTGGCGGTCGGAACTTCTTTTATCCTCACCCCCCCGA
TTGAGGAACATGAATTGGATACTCTTCCCCGCATCGAGATCCTAGAGAGA
TCGGCCAACACCCAGGAAAACCAGGACCAACTTGAGGGTGCAGCCAGACG
CCTTAGGAAGCGTTTGAAGGCAGAGGATGGATCAAGTGTTGACAAGGATA
AGGACGAGGATGGAGTAGAAGAGACTGCAGAACCTGCGCCGCCTAAAAAG
CGACGTGGTCGCCCAAGGAAATCAGACGCTGCCGTTGCCCCGCCCCAAAA
ACCTAAAGAAGACATTCAACTTGACCTTAAGGCAGAAGAGCTTGACGAGT
TCGTAGATGAGGAGACGGACCCTGACTTCTCATGCCTGGTGCCTAGCGAT
AACTCCTCCGAGGACGATGGAGGCAGCGATGGCTTCGACTCAGACTCAGA
CTTTGAACTGGACAATGGAAAGCAAGAGTTTGCCGTGCTGCCAAAAA
MXO01362.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4282-PA | 1959 | CG4282-RA | 390..838 | 399..847 | 2245 | 100 | Plus |
CG4282-PA | 1959 | CG4282-RA | 1..377 | 9..385 | 1885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4282-RA | 2393 | CG4282-RA | 147..984 | 9..847 | 4035 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16322434..16323268 | 12..847 | 3995 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:08:22 has no hits.
MXO01362.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:50 Download gff for
MXO01362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4282-PA | 1..833 | 9..842 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:44 Download gff for
MXO01362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4282-RA | 138..979 | 1..842 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:55 Download gff for
MXO01362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4282-RA | 138..979 | 1..842 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:55 Download gff for
MXO01362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16322431..16323263 | 9..842 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:44 Download gff for
MXO01362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12209936..12210768 | 9..842 | 98 | | Plus |