Clone MXO01362 Report

Search the DGRC for MXO01362

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:62
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG4282-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01362.3prime Sequence

780 bp (726 high quality bases) assembled on 2007-03-15

> MXO01362.3prime
ATGGTCTAGAAAGCTTGCGACTTCCTGTTTCGGCTTGTTTTGCGTCGAGG
CGTTGCGCGAAATCTTCAGGATGTTGGGTGGCTTGGGTTGGTTTTTGTCC
GCCTCGTATTGGGCGCGATGCAATCGCTGGCGATGCTTGTACATGTTGGC
GGAGCAGAAGAATGTCATCGGGCAGTTGGGACAGGTGTAGAGTACTTCAC
CCGTATGAGTGGATGTGTGTTCCTTGAGTTCCTGCGGCCGCTTGAAAGCC
TTTTCGCACATGGTGCACTTAAACTTGCGCTCGCACTCGTGATTGTGGTA
GATGTGACGCCGGAGAGCCCTTGCATTTGGGGACACCTTAGCGCATATAT
GGCAGCGATGCTCGCCGGCACTCTCTATTTGTATCGCCCCTCATGTGCTG
CTTCAGGCCGGTCATGCCCTTTAGCCAAGCGCCGCATATCTGGCACTGCT
GTAGCTCCGGTTCCGGACGTGGCTTATCCGAGTGCATCAGCTCCTGGTGC
TTCTTCAGGATGATCTTGGTGCGCATCTGCTTGCCGCACTTGTCGCAGAT
TATGGTACTCTCTGGGTCATGCATAGAGCTCATGTGGTTTTTCAGCTTGC
GCTCGGTGAGAAATTTTTTGTTGCACTCGGAACAGGTGAACTTGAACTCG
GACTTGGGCACATGCTTGTTAAGCTTGTGGTAGTCTATGGCCGTCTTGCT
AAGGAAGGTCTTCGAGCAGAGGTCGCAGCTAAACGTAAGCTTAACGGCGG
GATCCATGTGAACCTGCTGGTGCGACTCCA

MXO01362.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG4282-PA 1959 CG4282-RA 1196..1585 780..391 1950 100 Minus
CG4282-PA 1959 CG4282-RA 1598..1953 377..22 1780 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4282-RA 2393 CG4282-RA 1342..2099 780..22 3710 99.3 Minus
CG4707-RA 2248 CG4707-RA 1460..2070 668..57 430 72.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16323854..16324245 614..222 1855 98.7 Minus
2R 25286936 2R 16324305..16324507 224..22 1015 100 Minus
2R 25286936 2R 16323626..16323791 780..615 830 100 Minus
2R 25286936 2R 24604773..24604940 57..224 240 76.2 Plus
2R 25286936 2R 24605001..24605081 230..310 180 81.5 Plus
Blast to na_te.dros performed on 2014-11-28 21:23:39 has no hits.

MXO01362.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:50 Download gff for MXO01362.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4282-PA 1197..1959 18..779 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:30:56 Download gff for MXO01362.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4282-RA 1343..2106 13..779 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:18 Download gff for MXO01362.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4282-RA 1343..2106 13..779 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:18 Download gff for MXO01362.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16323627..16323791 615..779 100 -> Minus
2R 16323854..16324244 223..614 98 -> Minus
2R 16324307..16324514 13..222 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:30:56 Download gff for MXO01362.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12211132..12211296 615..779 100 -> Minus
arm_2R 12211359..12211749 223..614 98 -> Minus
arm_2R 12211812..12212019 13..222 98   Minus

MXO01362.5prime Sequence

847 bp (682 high quality bases) assembled on 2007-03-15

> MXO01362.5prime
CAGTCGACATGGATTCCTCTCCTAGCTGTTTACTCTGCATGTGCGAGTAT
CCGGCCATGATGGGGGACTATATAGATGTACACTCCGCGCGCGGCGACCA
ATTGGAGGTGACTACGATCGTCAACCAGCACTTCCCCGTCCAGATCTCCA
AGGAAAGCGACGAAAGGATATGCGGCCGCTGCTGGAAAATCGTCTCAGAC
TTCCACACTTTACACGAGTTCGTCAGTGCAGCGCAGAGCTCTTTACAGGA
AACAAAAGTGGCGCTCATGGAGGATGATCCCCTAACACAGGAAACTACGT
CCTTTCCGGAGATTATAAAACTGGCTACTCAGGAGGAGGAAGGGGTGACG
GAACCACAGGAACTTGGCGGTCGGAACTTCTTTTATCCTCACCCCCCCGA
TTGAGGAACATGAATTGGATACTCTTCCCCGCATCGAGATCCTAGAGAGA
TCGGCCAACACCCAGGAAAACCAGGACCAACTTGAGGGTGCAGCCAGACG
CCTTAGGAAGCGTTTGAAGGCAGAGGATGGATCAAGTGTTGACAAGGATA
AGGACGAGGATGGAGTAGAAGAGACTGCAGAACCTGCGCCGCCTAAAAAG
CGACGTGGTCGCCCAAGGAAATCAGACGCTGCCGTTGCCCCGCCCCAAAA
ACCTAAAGAAGACATTCAACTTGACCTTAAGGCAGAAGAGCTTGACGAGT
TCGTAGATGAGGAGACGGACCCTGACTTCTCATGCCTGGTGCCTAGCGAT
AACTCCTCCGAGGACGATGGAGGCAGCGATGGCTTCGACTCAGACTCAGA
CTTTGAACTGGACAATGGAAAGCAAGAGTTTGCCGTGCTGCCAAAAA

MXO01362.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG4282-PA 1959 CG4282-RA 390..838 399..847 2245 100 Plus
CG4282-PA 1959 CG4282-RA 1..377 9..385 1885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG4282-RA 2393 CG4282-RA 147..984 9..847 4035 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16322434..16323268 12..847 3995 98.8 Plus
Blast to na_te.dros performed on 2014-11-28 19:08:22 has no hits.

MXO01362.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:50 Download gff for MXO01362.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4282-PA 1..833 9..842 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:44 Download gff for MXO01362.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4282-RA 138..979 1..842 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:55 Download gff for MXO01362.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4282-RA 138..979 1..842 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:55 Download gff for MXO01362.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16322431..16323263 9..842 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:44 Download gff for MXO01362.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12209936..12210768 9..842 98   Plus