Clone MXO01363 Report

Search the DGRC for MXO01363

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:63
Vector:pMK33-CTAP-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01363.3prime Sequence

889 bp (828 high quality bases) assembled on 2007-03-15

> MXO01363.3prime
ATGGTCTAGAAAGCTTGCCTTTTCGTATGTGTCTTGCTGCTTCTCCAGTG
CCAGTTGGTTCTTCAAATCCTTGAGCTCCTTCTTGGCGACCTTCGCAATT
TCCTGCCGTAGTGCCTCAACCTTTTGTTTACGGTCATTTCTCTCCCCCAG
AGGCTTCGCCGGCTTTTCGTCATGGACTTTTTGGTGTCGGATGAGCGCCG
CTACCTGGCGAAAGCGATTGCCACACGTCTTACACTCGAAGGGCTTTTCG
CCAGTGTGTATCCACTCGTGTTGCTTCACGGATTGCGAGTTGGCAAAGCG
ACGGGAGCAGAAACGGCACTCAAAGTCCTTGACTTTTTCGTGGACGCTCT
TGTAGTGGCGCTTCATGTTGCCTATGCTCTTGACCCCCCCACTGCAGCTG
GGACACAAGTACATACCCTCCTTTTGCACAAACTGAATCTCGTCTGTGGG
ATTCACTGCGGTCCCTGCCAATAGGGCCACATCAACTTGCTCTACGCGGC
GGGGATTCTTAGGAATGCTGGCTACGGATTCGGCGTAAACCTTCAGCAGC
TGATGTGAGTCCACTTGAGTGTCACTGGCATCGCCATTTACTTGCACCTG
TTTATAAGTTTCCAGAGCCCTTTCCACGCTCTTCTCATGAATCTTCAGAT
GATTGTTGAGACTCTCCGAATGCAGGAACTTTTTGTCACAAACCTTGCAT
TCGCAGCGCTTCTCACCAGTGTGCGCCATCTCGTGTATTTTGCAGGCGTA
TGCTTTCCCGAACGTCTTTCCACAGTACTGGCAAGCAAAATTCCGGATTT
TCTCATGTACGATCTTAACATGGCTCTCTAGCACCCGCTTCGTGTGGGTG
GCATAGTCGCAAATGCGGCACTTAAACTGGTTCCGTTGG

MXO01363.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7386-PA 1989 CG7386-RA 1116..1614 889..391 2470 99.7 Minus
CG7386-PA 1989 CG7386-RA 1622..1986 383..19 1825 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7386-RA 2247 CG7386-RA 1185..2055 889..19 4280 99.4 Minus
CG10274-RB 3034 CG10274-RB 1471..1658 818..631 340 78.7 Minus
D19A-RA 3233 CG10269-RA 2134..2299 369..204 215 76 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6191181..6191857 695..19 3325 99.4 Minus
3L 28110227 3L 6190929..6191126 889..692 975 99.5 Minus
3L 28110227 3L 6180179..6180305 692..818 260 80.3 Plus
3L 28110227 3L 6179526..6179701 194..369 220 75 Plus
3L 28110227 3L 6186764..6186929 204..369 200 74.7 Plus
3L 28110227 3L 6187359..6187454 694..789 195 80.2 Plus
Blast to na_te.dros performed on 2014-11-28 20:32:52 has no hits.

MXO01363.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:51 Download gff for MXO01363.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7386-PA 1116..1989 15..889 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:39 Download gff for MXO01363.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7386-RA 1185..2058 15..889 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:08 Download gff for MXO01363.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7386-RA 1185..2058 15..889 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:08 Download gff for MXO01363.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6190929..6191124 694..889 99 -> Minus
3L 6191183..6191860 15..693 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:39 Download gff for MXO01363.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6184029..6184224 694..889 99 -> Minus
arm_3L 6184283..6184960 15..693 99   Minus

MXO01363.5prime Sequence

881 bp (786 high quality bases) assembled on 2007-03-15

> MXO01363.5prime
CAGTCGACATGGAGCTCAAGTACTCCGTCCAATCGCTTTGTCTCACCTGC
CTTGTCCACCTGGAGCATGGTGCTGGACACGATCTCTTCGTGGTTCCAGA
TCTGTTCCAGAAGCTCAGGGCATGCACTTCGTTTGATGCGGATCAAAACG
ACGGTTTCCCGAGAAACCTGTGCACCCAATGTTTCACCAAGCTGAACGAC
CTGCATGACTTCCGCGAACTGTGCGCAGAATCCATTAAACGTCTAAAGGA
AATGGTGACCAGCCAGAGGAATATGCCCATGGGTGTATTCGAATCTATAG
CTGATGATTCTGAGGCACCTGAAAGGCCAGAGGAGCCGGCCAGTTTCGAT
CCGCTGCTGAATAACAAACTAGAGATGATTGACTTTCTTACCCCCCCCCC
GTTCAAGTTGCTGGAAAAAGTTGACAAGGAACTAGAGGAGCATTCAAGGG
ACCAAAGCGAGGAGCACTTCTCCAGTGCAGAGCACAACGGACTGGAGGAG
GAGAAAAAGGAGTCGGAAGGGTTCAACAGCGACGATGAGCAGGCCATGGG
GCAGCGACGGATTGCGAACGACAAGCGTAAACTGTTTCGCCTTATGAGCT
GTTCCATCTGCCAGCAAAAGTTCAAAAAGCAATCAAAGTTCGAGGAGCAC
ATGAAGCACCACAATGACCTGTTGCCGTTTCAGTGTCAGGAGGAAAGCTG
CCGAAAGGGCTTCACCACAGCCGGTGCACTGCGTTTGCACGTGGACTATG
CGCACTCCAAGAAGGAGGATACGGTTCCCTGCACCGTGGAGGGCTGTCAA
TTGGTTTTTTCCCGTCTCCGGCTGCTGACCATTCACTTGAAAAAGGTTCA
CAACCAAGGCGAGGGTTATTGCTCCGCGGGG

MXO01363.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7386-PA 1989 CG7386-RA 390..845 401..856 2280 100 Plus
CG7386-PA 1989 CG7386-RA 1..375 9..383 1775 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7386-RA 2247 CG7386-RA 70..938 9..881 4025 97.7 Plus
D19A-RA 3233 CG10269-RA 282..353 140..211 210 86.1 Plus
CG10274-RB 3034 CG10274-RB 914..991 641..718 180 82.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6189814..6190682 9..881 3965 97.5 Plus
3L 28110227 3L 6188771..6188842 211..140 210 86.1 Minus
Blast to na_te.dros performed on 2014-11-28 19:54:17 has no hits.

MXO01363.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:51 Download gff for MXO01363.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7386-PA 1..869 9..881 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:13 Download gff for MXO01363.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7386-RA 70..938 9..881 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:22 Download gff for MXO01363.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7386-RA 70..938 9..881 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:22 Download gff for MXO01363.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6189814..6190682 9..881 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:13 Download gff for MXO01363.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6182914..6183782 9..881 97   Plus