Clone Sequence Records
MXO01363.3prime Sequence
889 bp (828 high quality bases) assembled on 2007-03-15
> MXO01363.3prime
ATGGTCTAGAAAGCTTGCCTTTTCGTATGTGTCTTGCTGCTTCTCCAGTG
CCAGTTGGTTCTTCAAATCCTTGAGCTCCTTCTTGGCGACCTTCGCAATT
TCCTGCCGTAGTGCCTCAACCTTTTGTTTACGGTCATTTCTCTCCCCCAG
AGGCTTCGCCGGCTTTTCGTCATGGACTTTTTGGTGTCGGATGAGCGCCG
CTACCTGGCGAAAGCGATTGCCACACGTCTTACACTCGAAGGGCTTTTCG
CCAGTGTGTATCCACTCGTGTTGCTTCACGGATTGCGAGTTGGCAAAGCG
ACGGGAGCAGAAACGGCACTCAAAGTCCTTGACTTTTTCGTGGACGCTCT
TGTAGTGGCGCTTCATGTTGCCTATGCTCTTGACCCCCCCACTGCAGCTG
GGACACAAGTACATACCCTCCTTTTGCACAAACTGAATCTCGTCTGTGGG
ATTCACTGCGGTCCCTGCCAATAGGGCCACATCAACTTGCTCTACGCGGC
GGGGATTCTTAGGAATGCTGGCTACGGATTCGGCGTAAACCTTCAGCAGC
TGATGTGAGTCCACTTGAGTGTCACTGGCATCGCCATTTACTTGCACCTG
TTTATAAGTTTCCAGAGCCCTTTCCACGCTCTTCTCATGAATCTTCAGAT
GATTGTTGAGACTCTCCGAATGCAGGAACTTTTTGTCACAAACCTTGCAT
TCGCAGCGCTTCTCACCAGTGTGCGCCATCTCGTGTATTTTGCAGGCGTA
TGCTTTCCCGAACGTCTTTCCACAGTACTGGCAAGCAAAATTCCGGATTT
TCTCATGTACGATCTTAACATGGCTCTCTAGCACCCGCTTCGTGTGGGTG
GCATAGTCGCAAATGCGGCACTTAAACTGGTTCCGTTGG
MXO01363.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7386-PA | 1989 | CG7386-RA | 1116..1614 | 889..391 | 2470 | 99.7 | Minus |
CG7386-PA | 1989 | CG7386-RA | 1622..1986 | 383..19 | 1825 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7386-RA | 2247 | CG7386-RA | 1185..2055 | 889..19 | 4280 | 99.4 | Minus |
CG10274-RB | 3034 | CG10274-RB | 1471..1658 | 818..631 | 340 | 78.7 | Minus |
D19A-RA | 3233 | CG10269-RA | 2134..2299 | 369..204 | 215 | 76 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6191181..6191857 | 695..19 | 3325 | 99.4 | Minus |
3L | 28110227 | 3L | 6190929..6191126 | 889..692 | 975 | 99.5 | Minus |
3L | 28110227 | 3L | 6180179..6180305 | 692..818 | 260 | 80.3 | Plus |
3L | 28110227 | 3L | 6179526..6179701 | 194..369 | 220 | 75 | Plus |
3L | 28110227 | 3L | 6186764..6186929 | 204..369 | 200 | 74.7 | Plus |
3L | 28110227 | 3L | 6187359..6187454 | 694..789 | 195 | 80.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:32:52 has no hits.
MXO01363.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:51 Download gff for
MXO01363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7386-PA | 1116..1989 | 15..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:39 Download gff for
MXO01363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7386-RA | 1185..2058 | 15..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:08 Download gff for
MXO01363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7386-RA | 1185..2058 | 15..889 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:08 Download gff for
MXO01363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6190929..6191124 | 694..889 | 99 | -> | Minus |
3L | 6191183..6191860 | 15..693 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:39 Download gff for
MXO01363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6184029..6184224 | 694..889 | 99 | -> | Minus |
arm_3L | 6184283..6184960 | 15..693 | 99 | | Minus |
MXO01363.5prime Sequence
881 bp (786 high quality bases) assembled on 2007-03-15
> MXO01363.5prime
CAGTCGACATGGAGCTCAAGTACTCCGTCCAATCGCTTTGTCTCACCTGC
CTTGTCCACCTGGAGCATGGTGCTGGACACGATCTCTTCGTGGTTCCAGA
TCTGTTCCAGAAGCTCAGGGCATGCACTTCGTTTGATGCGGATCAAAACG
ACGGTTTCCCGAGAAACCTGTGCACCCAATGTTTCACCAAGCTGAACGAC
CTGCATGACTTCCGCGAACTGTGCGCAGAATCCATTAAACGTCTAAAGGA
AATGGTGACCAGCCAGAGGAATATGCCCATGGGTGTATTCGAATCTATAG
CTGATGATTCTGAGGCACCTGAAAGGCCAGAGGAGCCGGCCAGTTTCGAT
CCGCTGCTGAATAACAAACTAGAGATGATTGACTTTCTTACCCCCCCCCC
GTTCAAGTTGCTGGAAAAAGTTGACAAGGAACTAGAGGAGCATTCAAGGG
ACCAAAGCGAGGAGCACTTCTCCAGTGCAGAGCACAACGGACTGGAGGAG
GAGAAAAAGGAGTCGGAAGGGTTCAACAGCGACGATGAGCAGGCCATGGG
GCAGCGACGGATTGCGAACGACAAGCGTAAACTGTTTCGCCTTATGAGCT
GTTCCATCTGCCAGCAAAAGTTCAAAAAGCAATCAAAGTTCGAGGAGCAC
ATGAAGCACCACAATGACCTGTTGCCGTTTCAGTGTCAGGAGGAAAGCTG
CCGAAAGGGCTTCACCACAGCCGGTGCACTGCGTTTGCACGTGGACTATG
CGCACTCCAAGAAGGAGGATACGGTTCCCTGCACCGTGGAGGGCTGTCAA
TTGGTTTTTTCCCGTCTCCGGCTGCTGACCATTCACTTGAAAAAGGTTCA
CAACCAAGGCGAGGGTTATTGCTCCGCGGGG
MXO01363.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7386-PA | 1989 | CG7386-RA | 390..845 | 401..856 | 2280 | 100 | Plus |
CG7386-PA | 1989 | CG7386-RA | 1..375 | 9..383 | 1775 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7386-RA | 2247 | CG7386-RA | 70..938 | 9..881 | 4025 | 97.7 | Plus |
D19A-RA | 3233 | CG10269-RA | 282..353 | 140..211 | 210 | 86.1 | Plus |
CG10274-RB | 3034 | CG10274-RB | 914..991 | 641..718 | 180 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6189814..6190682 | 9..881 | 3965 | 97.5 | Plus |
3L | 28110227 | 3L | 6188771..6188842 | 211..140 | 210 | 86.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:54:17 has no hits.
MXO01363.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:51 Download gff for
MXO01363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7386-PA | 1..869 | 9..881 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:13 Download gff for
MXO01363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7386-RA | 70..938 | 9..881 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:22 Download gff for
MXO01363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7386-RA | 70..938 | 9..881 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:22 Download gff for
MXO01363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6189814..6190682 | 9..881 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:13 Download gff for
MXO01363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6182914..6183782 | 9..881 | 97 | | Plus |