Clone Sequence Records
MXO01366.3prime Sequence
908 bp (742 high quality bases) assembled on 2007-03-15
> MXO01366.3prime
ATGGTCTAGAAAGCTTGCTTGCTTCTGTTCCGACTGTGGGAACAGCGCGC
CGCTGGTCTGGCGCTTCTTCATCGCTGTGGTGGCGCCCTGCGAAATCTTC
ATGATGTTCGGCGGGAGCGGTTTCTTGCGATCCGCCTCCCACTCGGCTCG
GTGGAGCCGCTGACGGTGCTTGTACATGTTGGCGTTGGAAAAGAACGTCA
TGGGGCAGTTAGGACAGGTGTACAGCACCTCTCCGGTGTGCGTTGATGTG
TGCTCCCTCAGATCCTGTGGACGCTTAAATGCCTTTTCGCACATCCCGCA
CTTGAACTTTCGCTCACAGAGGTGGTTGTGGTAGATGTGGCGCTTCAGGG
CTCGGGAATTGGTGGATGTCTTGTTGCTTTTTTCCCCCCCCCCCCTCGTC
GCCCGGCGGCTCGTGTAAAAAAATCATGTGCTGCTTTAGTCCGGACAAGT
GGCGCAGCCAGGTGCCGCAGATCTCGCACTGCACGGGATCGGGTTTTGGA
CGCGGTTTCTCGGAATGTTCAAGCTCGTGATGCTTTTTGAGATTCGTTTG
TGAACGTAGCGTCTTGCCACACTTATCGCAGATGATGGCCGCTTCCGGGT
CGTGCATGTAACGCAAGTGCTCTTTCAGTTTGCGTTCCGTAGGAATCTTC
TTGTTGCACTCCGGACAAGAGTATTTGAACTCGGATTTCGGGACATGCTT
GGAAACGTCATGATACTCCATGGCCGCCTTGGTTGTGAAGCTCTTGGGGC
ACTTCTCGCACTGGTAGATCCGCTTCTCCTTCGGCTCCGCCTTGACCTCC
GGGTTTGTGTGTGTCTGCTCGTGGACCTCCAGGGCGCGGGAGTCCTGGAA
TACCCGCCCGCACTGAAAACACATAAAGTGATCTGGGTTCTTGTGGACCA
AGACGGGC
MXO01366.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4707-PA | 2022 | CG4707-RA | 1134..1615 | 905..424 | 2360 | 99.5 | Minus |
| CG4707-PA | 2022 | CG4707-RA | 1661..2019 | 377..19 | 1795 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4707-RA | 2248 | CG4707-RA | 1256..2141 | 905..19 | 4110 | 97.6 | Minus |
| CG4282-RA | 2393 | CG4282-RA | 1811..2064 | 343..90 | 400 | 77.2 | Minus |
| CG4282-RA | 2393 | CG4282-RA | 1454..1592 | 701..563 | 185 | 77.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24604993..24605384 | 255..647 | 1645 | 95.2 | Plus |
| 2R | 25286936 | 2R | 24605447..24605705 | 647..905 | 1265 | 99.2 | Plus |
| 2R | 25286936 | 2R | 24604702..24604939 | 19..256 | 1190 | 100 | Plus |
| 2R | 25286936 | 2R | 16324306..16324472 | 256..90 | 235 | 76 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:12:20 has no hits.
MXO01366.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:53 Download gff for
MXO01366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4707-PA | 1131..2022 | 18..908 | 97 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:49 Download gff for
MXO01366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4707-RA | 1253..2148 | 10..908 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:36 Download gff for
MXO01366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4707-RA | 1253..2148 | 10..908 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:36 Download gff for
MXO01366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24604694..24604938 | 10..255 | 98 | <- | Plus |
| 2R | 24604994..24605384 | 256..647 | 95 | <- | Plus |
| 2R | 24605448..24605708 | 648..908 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:49 Download gff for
MXO01366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20492217..20492461 | 10..255 | 98 | <- | Plus |
| arm_2R | 20492517..20492907 | 256..647 | 95 | <- | Plus |
| arm_2R | 20492971..20493231 | 648..908 | 98 | | Plus |
MXO01366.5prime Sequence
836 bp (741 high quality bases) assembled on 2007-03-15
> MXO01366.5prime
CAGTCGACATGACTGTCTGTGTGCTCTGCCTGGACAGTAGCAATGCTGGC
TACGGCCTACAATCCGAGGAAGGCGTCCGTCTGAACATTAGGGCGACCAT
CCACAAGCACTTCGCGTTCTCCGAGGTTCTTACGGCTGGCGGTGATGCTG
AGGTCTGTCGGGAGTGCTGGAACTGCGTTAGCAGCTTCGAGGAGTTTCAC
CAGCGCGTCTCCTGCCTGCACCGGCAGCGGAGCAGCGATTCCAAAAGCGA
ACCCATCGAATTTTGCGGTCAGACAGAGGAGGCCATCATTAATCCGCTAT
ATTCTGTGGAGTTGGACGCGTTGGCGGAGGCCTTTTTTGCGCCCAGTGAG
GTCAAGGTGGAGGTGAACGAACTAGAACCCCTGTCCCCCCCCCCCCCTTG
GAAGACCCAGTTAAAACAAAAAAAAGAACAGCTCCGAAACGGTTGGGTGT
CCCAAACGAAGGCTCACCACACTCGAAGCGGCGCATTAAAAACGAGCTGC
CAGTGGATAGTGACTCGGATGCACCTCTGGCCGATTTTTTAAACTCGGAT
TCAAAGAGAAGTTCAGTTGGACCCGCAAAGAACAGCGAAGCGAACAAGGG
ACGCCAGCTACGAAGGAGCGCAAGAAGAGGACGGCCACCCAAAGCTAAGC
CGGAATCGGCTCCTTCCCCAAAGAAGGAACTGGACTCCGAAGATGGCGAA
GAAAATGCCAGGGATAACAATGACATGGAGTTCGTGGCTCCCGAGGCTGT
CTTGGGCACTGACGACAGCTCCAGTTCCTCCAGTGAGAGCAGTGGAGAGG
ATTCCGACCACAGCCTGCCGGACATAGAGCCTGAGG
MXO01366.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4707-PA | 2022 | CG4707-RA | 418..829 | 425..836 | 2060 | 100 | Plus |
| CG4707-PA | 2022 | CG4707-RA | 1..375 | 9..383 | 1875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4707-RA | 2248 | CG4707-RA | 118..951 | 4..836 | 3920 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24606010..24606723 | 836..124 | 3310 | 97.9 | Minus |
| 2R | 25286936 | 2R | 24606783..24606906 | 127..4 | 605 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:12:27 has no hits.
MXO01366.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:53 Download gff for
MXO01366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4707-PA | 1..829 | 9..836 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:52 Download gff for
MXO01366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4707-RA | 113..951 | 1..836 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:37 Download gff for
MXO01366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4707-RA | 113..951 | 1..836 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:37 Download gff for
MXO01366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24606785..24606905 | 1..125 | 96 | | Minus |
| 2R | 24606010..24606721 | 126..836 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:52 Download gff for
MXO01366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20494308..20494428 | 1..125 | 96 | | Minus |
| arm_2R | 20493533..20494244 | 126..836 | 97 | <- | Minus |
