MXO01367.3prime Sequence
895 bp (804 high quality bases) assembled on 2007-03-15
> MXO01367.3prime
ATGGTCTAGAAAGCTTGCGCTTGCCCAGCTCTGCAAGTAGGGATTGGTTT
GGACCAGCTGAGCTGGAAGGACGCCCCCGTTGCGGAATCCCAAGTCGAAG
CGAGGCTGAACTCCCATCTGACTGGTCGAGGTGGATCCAGAGTTCCGGAA
GGCGGTGCCACTGTAAGGATGCTTAAGGCAGCCATAGACCTCGCGGTAAC
GCCCATACAGAGTGCCATAGGAGACGCCCAGAATTCTGGCGGCCTTCTTC
ATCTCGAGTCTTTTGTTTTTAATGGCGTCCAACACGCGCTTGGTGAATGG
CTCTTCCCAGAACTGTGGACGCCGCCCCTTAGCCAGGTAGTCGTCCATCT
TGATGACGTCCTGCCACTGCGACAGCTCTTTTTTGCCCCCCCCCAGTTCG
GCGGCATCGTAGTCCTCAAACTTGATGTCGGGATAGTCGGCGGCGGCACC
GGTTCCACTGCCACTTACATCCTGACCACCGTTTCCGTTTCCGGCTGAGG
CATTTGCCACTGCAGCGGCGGCTGCTGCAACGGCCACAGCTGCGGTGGCG
GCGGCACTGGCCACATTCGGTGCAAATTCGTGGGCCATCAGCATGCCATG
TTCGTTGATCAAGTAGGAGGATCCAAGCGATCCGGATCCAGTTCCAGAAC
CGGAGCCACCGCCTGCGGCAGTCACGCCTCCCTCGTATTTGCAGGCAAAA
CTAGCTGGTATGACGACCGTAGGACGCGGCGACTCTGCCCTATTTGCCAC
CAGATGCTCGTTCTCGATCTCTTCCACCGGTTGCGGCAGCTCATCGGGCT
CCTCCTTGGGCGGATCACCCTCATCCTCTCCAGACTTCTCATAAAGGCGA
CGAGCATGACGTAATTTGCCATGGCGTTCGCGACGCTCGCCTATC
MXO01367.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3726-PA | 2031 | CG3726-RA | 1152..1653 | 895..394 | 2435 | 99.4 | Minus |
| CG3726-PA | 2031 | CG3726-RA | 1669..2028 | 378..19 | 1800 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3726-RA | 2901 | CG3726-RA | 1721..2597 | 895..19 | 4205 | 98.6 | Minus |
| CG3726-RB | 3129 | CG3726-RB | 1784..2625 | 895..54 | 4030 | 98.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5940006..5940617 | 895..284 | 2880 | 98 | Minus |
| X | 23542271 | X | 5940972..5941096 | 285..161 | 625 | 100 | Minus |
| X | 23542271 | X | 5941163..5941271 | 162..54 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:20:08 has no hits.
MXO01367.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:54 Download gff for
MXO01367.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3726-PA | 1152..2031 | 16..895 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:19:03 Download gff for
MXO01367.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3726-RA | 1721..2602 | 14..895 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:31 Download gff for
MXO01367.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3726-RA | 1721..2602 | 14..895 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:31 Download gff for
MXO01367.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5940006..5940615 | 286..895 | 98 | -> | Minus |
| X | 5940972..5941096 | 161..285 | 100 | -> | Minus |
| X | 5941165..5941271 | 54..160 | 100 | -> | Minus |
| X | 5941326..5941365 | 14..53 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:19:03 Download gff for
MXO01367.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5834039..5834648 | 286..895 | 98 | -> | Minus |
| arm_X | 5835005..5835129 | 161..285 | 100 | -> | Minus |
| arm_X | 5835198..5835304 | 54..160 | 100 | -> | Minus |
| arm_X | 5835359..5835398 | 14..53 | 95 | | Minus |
MXO01367.5prime Sequence
719 bp (717 high quality bases) assembled on 2007-03-15
> MXO01367.5prime
CAGTCGACATGCTGCCGCAGCAGTACTGCCTAAGGTGGAAGTACCACCAT
AGCAATCTGCAGACCATGTTCTCCCAGCTGCTGGATCGCGGTTGCTTCTG
CGACGTGACCCTGGCCTGCGAGGGTCAGCTCATCCGCGCCCATCGCGTCG
TCCTGTGCGCCTGCAGCACCTTCTTCGACGCCGTGCTCTCCAACTACGCC
AGTGAACGTGATCCGATCATCATCATGAAGGACGTTACCTTTGCGGAGGT
CAAATGCCTCATCGAGTTCATGTACAAGGGCGAGATCAACGTGGAGCATT
CCAGCCTTCCCTCGCTGCTGAAGACCGCCGATGACCTGAAGATCAAGGGC
CTGGCCGAGGTGACCTGGCGCGATGACGAATATTTTCCCCCCCCCCCAAT
GGCCGCCGCCGAGTTTCAAACAAAGACGCGCAGCTTGGCAGAGAGTTACG
CCCAGGACCTAATCCTTCAGCATCAGCAACAGCAACAGCAGGGCCCAGCT
GCTCCACCCTTGAATTTGCACAGCTCTGCTGCGCTCTTGGAGAGAGATCG
AGAACGGGAAAGGGAACGTGACCGGGAGCGTCTCTCGCCGGGGATGGAGG
GTGTACTGGGTCGCATGCCCGTGATGACGCCGCTGACTGGCGCATCGGGT
TCGGCAGGAGTGGGTTCGGTATCCGGTGGCACATCGCTCGAGGGCGTCGC
TCCCGTGGAGCACTTTCTG
MXO01367.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:06:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3726-PA | 2031 | CG3726-RA | 1..372 | 9..380 | 1860 | 100 | Plus |
| CG3726-PA | 2031 | CG3726-RA | 419..711 | 427..719 | 1465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3726-RB | 3129 | CG3726-RB | 632..1343 | 8..719 | 3365 | 98.2 | Plus |
| CG3726-RA | 2901 | CG3726-RA | 569..1280 | 8..719 | 3365 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5939035..5939458 | 296..719 | 1910 | 96.7 | Plus |
| X | 23542271 | X | 5938669..5938960 | 8..299 | 1460 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:33:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2370..2392 | 468..490 | 115 | 100 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1556..1592 | 464..500 | 113 | 78.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6862..6898 | 452..491 | 112 | 80 | Plus |
MXO01367.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:54 Download gff for
MXO01367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3726-PA | 1..711 | 9..719 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:46 Download gff for
MXO01367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3726-RA | 563..1280 | 1..719 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:16 Download gff for
MXO01367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3726-RA | 563..1280 | 1..719 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:16 Download gff for
MXO01367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5938663..5938960 | 1..299 | 98 | -> | Plus |
| X | 5939039..5939458 | 300..719 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:46 Download gff for
MXO01367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5832696..5832993 | 1..299 | 98 | -> | Plus |
| arm_X | 5833072..5833491 | 300..719 | 96 | | Plus |
